NO21G00340.1, NO21G00340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00340.1
Unique NameNO21G00340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1978
Alignment locationchr21:107466..109443 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:107466..109443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00340.1 vs.
Match: EWM20680.1 (exosome complex exonuclease rrp42 [Nannochloropsis gaditana])

HSP 1 Score: 436.0 bits (1120), Expect = 9.400e-119
Identity = 216/303 (71.29%), Postives = 261/303 (86.14%), Query Frame = 0 
Query:    1 MLSLARSRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSARVILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARDGEDLNADLTKAFETFLIRAEALDMEALCITPGRFSWTVYLDVLILEGQGNLLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIGLPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGIHKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKEGGNGNGQEGISGEI 304
            MLS ARSRTEL F+EAGV QDVRADGRRR+DYR+ISV VDV PS++GSARVILG  ATEVLAVVKA+LSQPS+E  + G LE+N+EVSPLALL++ET R+ EDLNA+LT AFE+FL+ + ALDMEALCITPG+++WT+YLDV++LEGQGN+LD +S AAYAALRTA LP +DAISGGLD+AN+PIEDFELSSTDI +A  LP++NLPICI+LNRIGNF+VVDTAA+EEAEGGV+ R+TVAVDETGH+CG++KGAGGGFP  E+  + QH VPIA KVLEGLKA +GL +     G E  S ++
Sbjct:    1 MLSQARSRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKGIEKGSSKL 303
The following BLAST results are available for this feature:
BLAST of NO21G00340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800Expect = 9.40e-119 / Id = 71.29SequenceEWM20680.1
Match NameE-valueIdentityDescription
EWM20680.19.400e-11971.29exosome complex exonuclease rrp42 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00340NO21G00340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00340.1NO21G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00340.1.cds1NO21G00340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00340.1 ID=NO21G00340.1|Name=NO21G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1978bp
CCACAGCGCAAAACCTCCTGCAATATGCTTTCCTTGGCCCGATCTCGCAC
AGAGCTAGACTTCATCGAAGCAGGGGTAGCACAGGACGTTCGCGCCGACG
GCCGCCGTCGCATCGACTACCGGGAAATCAGCGTAGCTGTGGACGTGCAC
CCATCGGCCAATGGCTCTGCACGCGTCATCCTCGGGCAAGGGGCCACTGA
GGTCCTTGCCGTCGTCAAAGCTGAGCTCTCCCAGCCGTCGCACGAACACC
CCAAGCGAGGCAAGCTGGAAGTGAATATCGAAGTCTCCCCTTTGGCGTTG
CTGCACCGCGAGACGGCCCGGGACGGGGAGGACCTCAACGCCGACTTGAC
CAAGGCATTTGAGACATTCCTAATACGGGCAGAAGCCCTGGACATGGAAG
CGCTATGCATTACTCCAGGAAGGTTTAGCTGGACAGTATACCTCGATGTC
TTGATATTAGAAGGACAAGGTAATTTGCTTGACACCATCTCCTTCGCCGC
CTATGCTGCCCTACGAACGGCGCGCCTTCCCAAAATCGATGCCATATCAG
GCGGACTCGACGCAGCCAATGACCCCATCGAAGACTTCGAATTGTCATCC
ACGGACATCACGGAAGCCATTGGCCTGCCCATCAAGAATCTCCCCATCTG
CATCTCTCTCAATCGCATTGGCAACTTTTTGGTAGTCGACACGGCTGCGG
ACGAGGAAGCGGAGGGAGGGGTAAAAGGGCGAGTGACAGTGGCAGTGGAT
GAAACAGGGCATGTTTGTGGTATTCACAAAGGGGCAGGAGGGGGGTTTCC
TGCACGGGAGCTGCAGGGTATGACGCAGCATGTGGTGCCGATTGCTCTGA
AAGTACTGGAGGGGCTTAAAGCAGTGCTTGGTTTGAAGGAAGGGGGAAAT
GGGAATGGACAAGAGGGGATTAGCGGGGAGATACCACGATAGATCAAAAT
GAGGGAATGGAGAATAGATGATCAAAGAACTTGTAACATTATCAAACCAA
GGGTAAGAAGACAGGTGTGCGGGGGGGGGGGGGAGATGAACGGTTGTGGC
GTTGGATTATGTCTTTGCTCTTTTTTTGCGGTCGATGCTCGTCTTCTCGA
CCTGATACATCTCATATCGTTTTGGAACGAGAGTGCCCTCATTCAATGTC
TGCTCTCAACTTCTGTTCCAGAATGTATCTCTTCTTAGTTAGTGTCCTCA
TTCAATGTGTGCTCTCAACTTCAGTTCCAGAATGCGTCTCTTAGTTCGGG
TCTGCCCTGCTCCTGAGTAGTGCACGCATGCGGTCAAGTAGAGCAAAGTC
ACAGAAGATATGGAGGGTCGGCGTACGAGATTATCGGCTTTTTGTTGCAA
ATGCAGCCTTACGTGCGGAAGTGAGGCGCTGCTTCACCATGTGCTTGAGG
GCAAATGAATGCCATGGCCCTCACCCAACACTTGATTGCCCATTCATTGC
ATTGCCATGAGGGAGATTGTTCGTTATCGTGGCGTGAATGGGTCTCAGAC
CAGCAAACAAGCTGGCTCGGCACGTCCCGGTATAATTTTATGCGTACATT
ATGACCTATTCACAAGCACTTCATTTATTCGATGCGGGGGACGGCTTCGA
TGAGGAAAAATGTTGAGGGGGAGAAAGGGAGGGTAAGACAAAAGCAAGAA
GATAGCGTCGTTTAAGGTCGCAGATCTTCCCAAAAATGGCAAATGGCAAC
GTTCTTTCTTGTAGTTTCCTACAATCCTAAGTATCGCGTTCAACCACAAG
TGTTTACACAAGTCCGCCACGTCACAGGATTACATACGAGGAATGGGGGA
AAGCCTTCCAACAATAAAGTGTTGCATACTCTTCCCTTATTCCTCCGACT
TGTAGGTGACTTTCTCAGGGCTTTCACCCGCAAAGTCCTTCGATGGCCCA
TACAGGGCTAGAAGGAGGGGGGGGAAGAGAAAGAGGAGGTCACAGGGGAG
GCAACTTATTCAGCGTCTGCATCACTTG
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protein sequence of NO21G00340.1

>NO21G00340.1-protein ID=NO21G00340.1-protein|Name=NO21G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MLSLARSRTELDFIEAGVAQDVRADGRRRIDYREISVAVDVHPSANGSAR
VILGQGATEVLAVVKAELSQPSHEHPKRGKLEVNIEVSPLALLHRETARD
GEDLNADLTKAFETFLIRAEALDMEALCITPGRFSWTVYLDVLILEGQGN
LLDTISFAAYAALRTARLPKIDAISGGLDAANDPIEDFELSSTDITEAIG
LPIKNLPICISLNRIGNFLVVDTAADEEAEGGVKGRVTVAVDETGHVCGI
HKGAGGGFPARELQGMTQHVVPIALKVLEGLKAVLGLKEGGNGNGQEGIS
GEIPR*
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mRNA from alignment at chr21:107466..109443+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00340.1 ID=NO21G00340.1|Name=NO21G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1978bp|location=Sequence derived from alignment at chr21:107466..109443+ (Nannochloropsis oceanica)
CCACAGCGCAAAACCTCCTGCAATATGCTTTCCTTGGCCCGATCTCGCAC
AGAGCTAGACTTCATCGAAGCAGGGGTAGCACAGGACGTTCGCGCCGACG
GCCGCCGTCGCATCGACTACCGGGAAATCAGCGTAGCTGTGGACGTGCAC
CCATCGGCCAATGGCTCTGCACGCGTCATCCTCGGGCAAGGGGCCACTGA
GGTCCTTGCCGTCGTCAAAGCTGAGCTCTCCCAGCCGTCGCACGAACACC
CCAAGCGAGGCAAGCTGGAAGTGAATATCGAAGTCTCCCCTTTGGCGTTG
CTGCACCGCGAGACGGCCCGGGACGGGGAGGACCTCAACGCCGACTTGAC
CAAGGCATTTGAGACATTCCTAATACGGGCAGAAGCCCTGGACATGGAAG
CGCTATGCATTACTCCAGGAAGGTTTAGCTGGACAGTATACCTCGATGTC
TTGATATTAGAAGGACAAGGTAATTTGCTTGACACCATCTCCTTCGCCGC
CTATGCTGCCCTACGAACGGCGCGCCTTCCCAAAATCGATGCCATATCAG
GCGGACTCGACGCAGCCAATGACCCCATCGAAGACTTCGAATTGTCATCC
ACGGACATCACGGAAGCCATTGGCCTGCCCATCAAGAATCTCCCCATCTG
CATCTCTCTCAATCGCATTGGCAACTTTTTGGTAGTCGACACGGCTGCGG
ACGAGGAAGCGGAGGGAGGGGTAAAAGGGCGAGTGACAGTGGCAGTGGAT
GAAACAGGGCATGTTTGTGGTATTCACAAAGGGGCAGGAGGGGGGTTTCC
TGCACGGGAGCTGCAGGGTATGACGCAGCATGTGGTGCCGATTGCTCTGA
AAGTACTGGAGGGGCTTAAAGCAGTGCTTGGTTTGAAGGAAGGGGGAAAT
GGGAATGGACAAGAGGGGATTAGCGGGGAGATACCACGATAGATCAAAAT
GAGGGAATGGAGAATAGATGATCAAAGAACTTGTAACATTATCAAACCAA
GGGTAAGAAGACAGGTGTGCGGGGGGGGGGGGGAGATGAACGGTTGTGGC
GTTGGATTATGTCTTTGCTCTTTTTTTGCGGTCGATGCTCGTCTTCTCGA
CCTGATACATCTCATATCGTTTTGGAACGAGAGTGCCCTCATTCAATGTC
TGCTCTCAACTTCTGTTCCAGAATGTATCTCTTCTTAGTTAGTGTCCTCA
TTCAATGTGTGCTCTCAACTTCAGTTCCAGAATGCGTCTCTTAGTTCGGG
TCTGCCCTGCTCCTGAGTAGTGCACGCATGCGGTCAAGTAGAGCAAAGTC
ACAGAAGATATGGAGGGTCGGCGTACGAGATTATCGGCTTTTTGTTGCAA
ATGCAGCCTTACGTGCGGAAGTGAGGCGCTGCTTCACCATGTGCTTGAGG
GCAAATGAATGCCATGGCCCTCACCCAACACTTGATTGCCCATTCATTGC
ATTGCCATGAGGGAGATTGTTCGTTATCGTGGCGTGAATGGGTCTCAGAC
CAGCAAACAAGCTGGCTCGGCACGTCCCGGTATAATTTTATGCGTACATT
ATGACCTATTCACAAGCACTTCATTTATTCGATGCGGGGGACGGCTTCGA
TGAGGAAAAATGTTGAGGGGGAGAAAGGGAGGGTAAGACAAAAGCAAGAA
GATAGCGTCGTTTAAGGTCGCAGATCTTCCCAAAAATGGCAAATGGCAAC
GTTCTTTCTTGTAGTTTCCTACAATCCTAAGTATCGCGTTCAACCACAAG
TGTTTACACAAGTCCGCCACGTCACAGGATTACATACGAGGAATGGGGGA
AAGCCTTCCAACAATAAAGTGTTGCATACTCTTCCCTTATTCCTCCGACT
TGTAGGTGACTTTCTCAGGGCTTTCACCCGCAAAGTCCTTCGATGGCCCA
TACAGGGCTAGAAGGAGGGGGGGGAAGAGAAAGAGGAGGTCACAGGGGAG
GCAACTTATTCAGCGTCTGCATCACTTG
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Coding sequence (CDS) from alignment at chr21:107466..109443+

>NO21G00340.1 ID=NO21G00340.1|Name=NO21G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr21:107466..109443+ (Nannochloropsis oceanica)
ATGCTTTCCTTGGCCCGATCTCGCACAGAGCTAGACTTCATCGAAGCAGG
GGTAGCACAGGACGTTCGCGCCGACGGCCGCCGTCGCATCGACTACCGGG
AAATCAGCGTAGCTGTGGACGTGCACCCATCGGCCAATGGCTCTGCACGC
GTCATCCTCGGGCAAGGGGCCACTGAGGTCCTTGCCGTCGTCAAAGCTGA
GCTCTCCCAGCCGTCGCACGAACACCCCAAGCGAGGCAAGCTGGAAGTGA
ATATCGAAGTCTCCCCTTTGGCGTTGCTGCACCGCGAGACGGCCCGGGAC
GGGGAGGACCTCAACGCCGACTTGACCAAGGCATTTGAGACATTCCTAAT
ACGGGCAGAAGCCCTGGACATGGAAGCGCTATGCATTACTCCAGGAAGGT
TTAGCTGGACAGTATACCTCGATGTCTTGATATTAGAAGGACAAGGTAAT
TTGCTTGACACCATCTCCTTCGCCGCCTATGCTGCCCTACGAACGGCGCG
CCTTCCCAAAATCGATGCCATATCAGGCGGACTCGACGCAGCCAATGACC
CCATCGAAGACTTCGAATTGTCATCCACGGACATCACGGAAGCCATTGGC
CTGCCCATCAAGAATCTCCCCATCTGCATCTCTCTCAATCGCATTGGCAA
CTTTTTGGTAGTCGACACGGCTGCGGACGAGGAAGCGGAGGGAGGGGTAA
AAGGGCGAGTGACAGTGGCAGTGGATGAAACAGGGCATGTTTGTGGTATT
CACAAAGGGGCAGGAGGGGGGTTTCCTGCACGGGAGCTGCAGGGTATGAC
GCAGCATGTGGTGCCGATTGCTCTGAAAGTACTGGAGGGGCTTAAAGCAG
TGCTTGGTTTGAAGGAAGGGGGAAATGGGAATGGACAAGAGGGGATTAGC
GGGGAGATACCACGATAG
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Synonyms
Publications