NO21G00330, NO21G00330 (gene) Nannochloropsis oceanica

Overview
NameNO21G00330
Unique NameNO21G00330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1758
Alignment locationchr21:105407..107164 -

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Properties
Property NameValue
DescriptionPolynucleotide 5'-hydroxyl-kinase NOL9
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:105407..107164 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032319CLP1_P
Homology
BLAST of NO21G00330 vs. NCBI_GenBank
Match: EWM20682.1 (hypothetical protein Naga_101461g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 87.8 bits (216), Expect = 1.000e-13
Identity = 51/123 (41.46%), Postives = 64/123 (52.03%), Query Frame = 0
Query:  214 LLHLTPVSTSICRLPRFLTAYDDAEALWARH-----------SPPPXXXXXXXXXXXXXXESGKDAKQXXXXXXXXXXXXXXXXSVILHLPGAIVMEERVLVECLGLRPLHIPQSWKNTADEI 326
            LL LTP+S SI  LP FLTA+DDAEALW +H           S PP                G+  K                 S+ILHLPGA++M+E+VLVECLG+ PL +P +W N  DE+
Sbjct:    1 LLLLTPLSPSISHLPLFLTAHDDAEALWTQHRQLATPARGPSSLPPSPLSSSPAVAPLGPGQGRRGKD----KREGGEGTQEASSLILHLPGALIMDEKVLVECLGMIPLCVPPTWTNAGDEV 119          
BLAST of NO21G00330 vs. NCBI_GenBank
Match: CBN74160.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.9 bits (185), Expect = 4.000e-10
Identity = 101/368 (27.45%), Postives = 134/368 (36.41%), Query Frame = 0
Query:  127 GGMFLGMEAGESCCLVGSMGIHVLRGEVDILGHALRAPMTGP-VPMHSPKWMSSLXXXXXXXXXXXXXXXXXXINFLPSSLASSS-----------------LPVLLHLTPVSTSICRLP-RFLTAYDDAEALWA------------RHSPPPXXXXXXXXXXXXXXESGKDAKQXXXXXXXXXXXXXXXXSVILHLPGAIVMEER------VLVECLGLRPLHIPQSWKNTADEIISLQATAQGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRECGLVIAICGGKGTGKSTFGRYLAHRFLASXXXXXXXXXXXXXAYLDCDVGQPELTPSGLVSLSLLSNSLPPTTFPLLGPP 458
            G + +G+ + E  C VG+  +   RG+ D+ G  L     GP V  HSP+WM  L                        + A++                   PV++    +S    R P +FL+A  DA+AL+A              S PP              E       XXXXXXXXXXXX         L G+   E R      V  E  GLRPL +PQ W N  D +++      G                                               + +CG KG GKST  R+LA+R L               AY+DCD+GQPE TP G VSL LL+        P++GPP
Sbjct:  113 GALVVGLHSLEKLCFVGAALVRCGRGQADLSGFTLLPEAWGPYVEAHSPRWMGLLVLRALDAEDRPDVAIARGSIATDDAGAANDDKMENEIEEAIDRIAEHFPVVVVFKSLSG---RSPLKFLSAQADADALYAPSIGADDSSDPVAESQPPQSNRRRGLQTAEGGELXXXXXXXXXXXXXXXXXXVASGCTGDVLDGSFAAELRLPGMQVVTTEVAGLRPLTLPQDWANAIDAVLASPPRPAGGGSNDS-----------------------------------------VLVCGAKGVGKSTLCRFLANRMLG---------RHREVAYMDCDLGQPEFTPPGQVSLHLLNT-------PVVGPP 420          
BLAST of NO21G00330 vs. NCBI_GenBank
Match: XP_015767061.1 (PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9-like [Acropora digitifera])

HSP 1 Score: 65.5 bits (158), Expect = 5.300e-7
Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = 0
Query:  381 VIAICGGKGTGKSTFGRYLAHRFLASXXXXXXXXXXXXXAYLDCDVGQPELTPSGLVSLSLLSNSLPPTTFPLLGPP 458
            V+ ICGGK  GKSTF RYL + FL S              +L+CDVGQ E TP GL+SL+ +S+       PLLGPP
Sbjct:  339 VVLICGGKDVGKSTFARYLTNSFLNSRKELF---------FLECDVGQTEFTPPGLISLNKVSS-------PLLGPP 399          
BLAST of NO21G00330 vs. NCBI_GenBank
Match: POM68466.1 (hypothetical protein PHPALM_15370 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 65.5 bits (158), Expect = 5.300e-7
Identity = 39/75 (52.00%), Postives = 44/75 (58.67%), Query Frame = 0
Query:  382 IAICGGKGTGKSTFGRYLAHRFLASXXXXXXXXXXXXXAYLDCDVGQPELTPSGLVSLSLLSNSLPPTTFPLLGP 457
            I +CGGKG GKSTF RYL +R LA              A+LD D+GQ ELTPSGLV+L  L       T PLLGP
Sbjct:  147 IVVCGGKGVGKSTFCRYLVNRLLAK---------FGTVAFLDTDLGQSELTPSGLVALHAL-------TTPLLGP 205          
BLAST of NO21G00330 vs. NCBI_GenBank
Match: POM70697.1 (hypothetical protein PHPALM_12828, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 65.5 bits (158), Expect = 5.300e-7
Identity = 39/75 (52.00%), Postives = 44/75 (58.67%), Query Frame = 0
Query:  382 IAICGGKGTGKSTFGRYLAHRFLASXXXXXXXXXXXXXAYLDCDVGQPELTPSGLVSLSLLSNSLPPTTFPLLGP 457
            I +CGGKG GKSTF RYL +R LA              A+LD D+GQ ELTPSGLV+L  L       T PLLGP
Sbjct:  215 IVVCGGKGVGKSTFCRYLVNRLLAK---------FGTVAFLDTDLGQSELTPSGLVALHAL-------TSPLLGP 273          
BLAST of NO21G00330 vs. NCBI_GenBank
Match: ORX92775.1 (hypothetical protein K493DRAFT_338632 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 65.1 bits (157), Expect = 7.000e-7
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 0
Query:  381 VIAICGGKGTGKSTFGRYLAHRFLASXXXXXXXXXXXXXAYLDCDVGQPELTPSGLVSLSLLSNSLPPTTFPLLGPP 458
            +I +CG KG GKSTF R+L++  L               AYL+CD+GQ E TP+GLVSL+L+SN       P+ GPP
Sbjct:  231 IIVVCGTKGVGKSTFTRFLSNSLL---------NEYKDIAYLECDIGQSEFTPNGLVSLNLVSN-------PVFGPP 291          
BLAST of NO21G00330 vs. NCBI_GenBank
Match: XP_009538864.1 (hypothetical protein PHYSODRAFT_533258 [Phytophthora sojae] >EGZ06003.1 hypothetical protein PHYSODRAFT_533258 [Phytophthora sojae])

HSP 1 Score: 64.7 bits (156), Expect = 9.100e-7
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 0
Query:  382 IAICGGKGTGKSTFGRYLAHRFLASXXXXXXXXXXXXXAYLDCDVGQPELTPSGLVSLSLLSNSLPPTTFPLLGP 457
            I +CGGKG GKSTF RYL +R LA              A+LD D+GQ ELTPSGLV+L  L+        PLLGP
Sbjct:  250 IVVCGGKGVGKSTFCRYLVNRLLAK---------FGTVAFLDTDLGQSELTPSGLVALHALAT-------PLLGP 308          
BLAST of NO21G00330 vs. NCBI_GenBank
Match: ETI38637.1 (hypothetical protein F443_15711 [Phytophthora parasitica P1569] >ETM38666.1 hypothetical protein L914_15108 [Phytophthora parasitica])

HSP 1 Score: 64.7 bits (156), Expect = 9.100e-7
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 0
Query:  382 IAICGGKGTGKSTFGRYLAHRFLASXXXXXXXXXXXXXAYLDCDVGQPELTPSGLVSLSLLSNSLPPTTFPLLGP 457
            I +CGGKG GKSTF RYL +R L+              A+LD D+GQ ELTPSGLV+L  LS        PLLGP
Sbjct:  249 IVVCGGKGVGKSTFCRYLVNRLLSK---------FGTVAFLDTDLGQSELTPSGLVALHALST-------PLLGP 307          
BLAST of NO21G00330 vs. NCBI_GenBank
Match: ETK78837.1 (hypothetical protein L915_15252 [Phytophthora parasitica])

HSP 1 Score: 64.7 bits (156), Expect = 9.100e-7
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 0
Query:  382 IAICGGKGTGKSTFGRYLAHRFLASXXXXXXXXXXXXXAYLDCDVGQPELTPSGLVSLSLLSNSLPPTTFPLLGP 457
            I +CGGKG GKSTF RYL +R L+              A+LD D+GQ ELTPSGLV+L  LS        PLLGP
Sbjct:  249 IVVCGGKGVGKSTFCRYLVNRLLSK---------FGTVAFLDTDLGQSELTPSGLVALHALST-------PLLGP 307          
BLAST of NO21G00330 vs. NCBI_GenBank
Match: ETL32271.1 (hypothetical protein L916_15143 [Phytophthora parasitica])

HSP 1 Score: 64.7 bits (156), Expect = 9.100e-7
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 0
Query:  382 IAICGGKGTGKSTFGRYLAHRFLASXXXXXXXXXXXXXAYLDCDVGQPELTPSGLVSLSLLSNSLPPTTFPLLGP 457
            I +CGGKG GKSTF RYL +R L+              A+LD D+GQ ELTPSGLV+L  LS        PLLGP
Sbjct:  249 IVVCGGKGVGKSTFCRYLVNRLLSK---------FGTVAFLDTDLGQSELTPSGLVALHALST-------PLLGP 307          
The following BLAST results are available for this feature:
BLAST of NO21G00330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
EWM20682.11.000e-1341.46hypothetical protein Naga_101461g2, partial [Nanno... [more]
CBN74160.14.000e-1027.45conserved unknown protein [Ectocarpus siliculosus][more]
XP_015767061.15.300e-748.05PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9-... [more]
POM68466.15.300e-752.00hypothetical protein PHPALM_15370 [Phytophthora pa... [more]
POM70697.15.300e-752.00hypothetical protein PHPALM_12828, partial [Phytop... [more]
ORX92775.17.000e-745.45hypothetical protein K493DRAFT_338632 [Basidiobolu... [more]
XP_009538864.19.100e-750.67hypothetical protein PHYSODRAFT_533258 [Phytophtho... [more]
ETI38637.19.100e-750.67hypothetical protein F443_15711 [Phytophthora para... [more]
ETK78837.19.100e-750.67hypothetical protein L915_15252 [Phytophthora para... [more]
ETL32271.19.100e-750.67hypothetical protein L916_15143 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL029nonsL029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR099ngnoR099Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00330.1NO21G00330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|268756gene_9501Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101461g2gene9724Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00330.1NO21G00330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00330 ID=NO21G00330|Name=NO21G00330|organism=Nannochloropsis oceanica|type=gene|length=1758bp
ATGCCACGACGGAGACGAAAGCGATCCCGGTCATGCAGCGTGGGCAGCAA
CAGCGGCGGCACATCGGCGGGTAAGCGAGGTGGGCGTAGCAAACGGAGCA
GTAAGGAGCAGGAGATCAAGCGGCATGAGGAGGAGGAGGAGGAGGAGGAG
GAGGACGACGACGACGAGGAGGAGAAAATGGAAGACGATGAGAGCTGCCA
AATCATAAATGAGGACGAGGATGAGGACGGGAACGTAGAGGAGGAAGAGG
GGGCAGTCCAAAAAGCAGTGGAATCGACAGCTGCAGCTGCACCAGGTCTG
TCACCAACACCAGTTCTGGGTCATACTCCCTCTTACAAGCGACTTCGGTC
ATGGCGAGACCCCGAGAAGAAGCCACAAGGCGGCATGTTCCTGGGCATGG
AGgtatgtcctgatagagcaggctgtccctccctccctctctccctccct
ctctccctccctccctccctccctccctccccttcctcctccaccccccc
cctcatctgtgtcccattttattcaaacagGCCGGTGAATCCTGCTGCTT
GGTGGGCAGCATGGGGATCCATGTGCTGAGAGGGGAGGTCGATATTCTGG
GGCACGCGTTACGAGCGCCAATGACAGGGCCTGTGCCCATGCACTCACCC
AAGTGGATGTCTTCCCTCGTCATCACTGCCTCCTCCTCATCGTCTTCCTC
GTCACCTGAGAACAGCAGCAATATCAATTTTCTTCCCTCCTCGCTTGCCT
CCTCCTCTCTTCCCGTCCTCCTCCATCTCACCCCTGTCTCAACTTCCATC
TGCCGCTTACCTCGCTTCTTGACGGCCTACGACGATGCTGAGGCCCTGTG
GGCACGTCACAGCCCTCCTCCTCCTTCCCCTCCTCCTCTATCTCCTGCTC
CCCTTCCCCCATTCGAAAGTGGAAAGGACGCGAAGCAAGATAGAGAAGAG
GAGCAGCACCAGCATCAGGACGAGGATAATGATGGGTCGGTAATTTTGCA
CCTACCCGGAGCCATTGTGATGGAGGAAAGGGTCTTAGTGGAGTGCTTGG
GCTTGCGGCCCTTGCACATCCCGCAATCCTGGAAAAATACGGCGGATGAG
gtgcgttttggttcttccctccctccctccctccctcccttccttcctcc
ctccctcccgcccttctttttggcgcatttaccttttcatcccagctcaa
acactctccacctctccccccgtcccaccctccgtccctccttccttccc
tccctccacccagATCATCTCTTTGCAGGCCACTGCTCAGGGAACCTCCA
GCCCAGCCACCGCCACCACCAACGGCAGCAGCAGCAACAGGAGTAATAGC
AGCAACAACAACAGAAGTAGCAAGGGGAAAGAAATGCTAAAGAAAGAAGC
ACAGAGGGAGGGAGGGAGGGAGTGTGGGCTCGTCATCGCGATTTGTGGCG
GGAAAGGCACGGGTAAATCCACTTTTGGCCGCTACCTCGCCCATCGTTTC
CTGGCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTTCCTCCTTCCGTCGC
CTACCTCGACTGTGACGTCGGCCAGCCGGAGTTGACTCCCTCAGGGCTCG
TCTCCCTCTCCCTGCTCTCTAACTCCCTCCCTCCCACCACCTTTCCCCTC
CTTGGCCCCCCCACACCCACTGCTCCTTCCCGTCCTCCCTCCCGCCCTCC
CTCCCCCCTCCCTCCCCCTCCTCTCCTTCTTCCTCGGGGACATCACCCCC
CGCCATGA
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protein sequence of NO21G00330.1

>NO21G00330.1-protein ID=NO21G00330.1-protein|Name=NO21G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MPRRRRKRSRSCSVGSNSGGTSAGKRGGRSKRSSKEQEIKRHEEEEEEEE
EDDDDEEEKMEDDESCQIINEDEDEDGNVEEEEGAVQKAVESTAAAAPGL
SPTPVLGHTPSYKRLRSWRDPEKKPQGGMFLGMEAGESCCLVGSMGIHVL
RGEVDILGHALRAPMTGPVPMHSPKWMSSLVITASSSSSSSSPENSSNIN
FLPSSLASSSLPVLLHLTPVSTSICRLPRFLTAYDDAEALWARHSPPPPS
PPPLSPAPLPPFESGKDAKQDREEEQHQHQDEDNDGSVILHLPGAIVMEE
RVLVECLGLRPLHIPQSWKNTADEIISLQATAQGTSSPATATTNGSSSNR
SNSSNNNRSSKGKEMLKKEAQREGGRECGLVIAICGGKGTGKSTFGRYLA
HRFLASLPPALPPSLPPSVAYLDCDVGQPELTPSGLVSLSLLSNSLPPTT
FPLLGPPTPTAPSRPPSRPPSPLPPPPLLLPRGHHPPP*
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Synonyms
Publications