NO21G00330.1, NO21G00330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00330.1
Unique NameNO21G00330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1467
Alignment locationchr21:105407..107164 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:105407..107164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00330.1 vs.
Match: EWM20682.1 (hypothetical protein Naga_101461g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 97.8 bits (242), Expect = 9.700e-17
Identity = 62/126 (49.21%), Postives = 77/126 (61.11%), Query Frame = 0 
Query:  214 LLHLTPVSTSICRLPRFLTAYDDAEALWARH----------SPPPPSPPPLSPA--PLPPFES--GKDAKQDREEEQHQHQDEDNDGSVILHLPGAIVMEERVLVECLGLRPLHIPQSWKNTADEI 326
            LL LTP+S SI  LP FLTA+DDAEALW +H          S  PPSP   SPA  PL P +   GKD ++  E  Q          S+ILHLPGA++M+E+VLVECLG+ PL +P +W N  DE+
Sbjct:    1 LLLLTPLSPSISHLPLFLTAHDDAEALWTQHRQLATPARGPSSLPPSPLSSSPAVAPLGPGQGRRGKDKREGGEGTQEA-------SSLILHLPGALIMDEKVLVECLGMIPLCVPPTWTNAGDEV 119
The following BLAST results are available for this feature:
BLAST of NO21G00330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20682.19.700e-1749.21hypothetical protein Naga_101461g2, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00330NO21G00330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00330.1NO21G00330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00330.1.cds1NO21G00330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00330.1.cds2NO21G00330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00330.1.cds3NO21G00330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00330.1 ID=NO21G00330.1|Name=NO21G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1467bp
ATGCCACGACGGAGACGAAAGCGATCCCGGTCATGCAGCGTGGGCAGCAA
CAGCGGCGGCACATCGGCGGGTAAGCGAGGTGGGCGTAGCAAACGGAGCA
GTAAGGAGCAGGAGATCAAGCGGCATGAGGAGGAGGAGGAGGAGGAGGAG
GAGGACGACGACGACGAGGAGGAGAAAATGGAAGACGATGAGAGCTGCCA
AATCATAAATGAGGACGAGGATGAGGACGGGAACGTAGAGGAGGAAGAGG
GGGCAGTCCAAAAAGCAGTGGAATCGACAGCTGCAGCTGCACCAGGTCTG
TCACCAACACCAGTTCTGGGTCATACTCCCTCTTACAAGCGACTTCGGTC
ATGGCGAGACCCCGAGAAGAAGCCACAAGGCGGCATGTTCCTGGGCATGG
AGGCCGGTGAATCCTGCTGCTTGGTGGGCAGCATGGGGATCCATGTGCTG
AGAGGGGAGGTCGATATTCTGGGGCACGCGTTACGAGCGCCAATGACAGG
GCCTGTGCCCATGCACTCACCCAAGTGGATGTCTTCCCTCGTCATCACTG
CCTCCTCCTCATCGTCTTCCTCGTCACCTGAGAACAGCAGCAATATCAAT
TTTCTTCCCTCCTCGCTTGCCTCCTCCTCTCTTCCCGTCCTCCTCCATCT
CACCCCTGTCTCAACTTCCATCTGCCGCTTACCTCGCTTCTTGACGGCCT
ACGACGATGCTGAGGCCCTGTGGGCACGTCACAGCCCTCCTCCTCCTTCC
CCTCCTCCTCTATCTCCTGCTCCCCTTCCCCCATTCGAAAGTGGAAAGGA
CGCGAAGCAAGATAGAGAAGAGGAGCAGCACCAGCATCAGGACGAGGATA
ATGATGGGTCGGTAATTTTGCACCTACCCGGAGCCATTGTGATGGAGGAA
AGGGTCTTAGTGGAGTGCTTGGGCTTGCGGCCCTTGCACATCCCGCAATC
CTGGAAAAATACGGCGGATGAGATCATCTCTTTGCAGGCCACTGCTCAGG
GAACCTCCAGCCCAGCCACCGCCACCACCAACGGCAGCAGCAGCAACAGG
AGTAATAGCAGCAACAACAACAGAAGTAGCAAGGGGAAAGAAATGCTAAA
GAAAGAAGCACAGAGGGAGGGAGGGAGGGAGTGTGGGCTCGTCATCGCGA
TTTGTGGCGGGAAAGGCACGGGTAAATCCACTTTTGGCCGCTACCTCGCC
CATCGTTTCCTGGCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTTCCTCC
TTCCGTCGCCTACCTCGACTGTGACGTCGGCCAGCCGGAGTTGACTCCCT
CAGGGCTCGTCTCCCTCTCCCTGCTCTCTAACTCCCTCCCTCCCACCACC
TTTCCCCTCCTTGGCCCCCCCACACCCACTGCTCCTTCCCGTCCTCCCTC
CCGCCCTCCCTCCCCCCTCCCTCCCCCTCCTCTCCTTCTTCCTCGGGGAC
ATCACCCCCCGCCATGA
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protein sequence of NO21G00330.1

>NO21G00330.1-protein ID=NO21G00330.1-protein|Name=NO21G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MPRRRRKRSRSCSVGSNSGGTSAGKRGGRSKRSSKEQEIKRHEEEEEEEE
EDDDDEEEKMEDDESCQIINEDEDEDGNVEEEEGAVQKAVESTAAAAPGL
SPTPVLGHTPSYKRLRSWRDPEKKPQGGMFLGMEAGESCCLVGSMGIHVL
RGEVDILGHALRAPMTGPVPMHSPKWMSSLVITASSSSSSSSPENSSNIN
FLPSSLASSSLPVLLHLTPVSTSICRLPRFLTAYDDAEALWARHSPPPPS
PPPLSPAPLPPFESGKDAKQDREEEQHQHQDEDNDGSVILHLPGAIVMEE
RVLVECLGLRPLHIPQSWKNTADEIISLQATAQGTSSPATATTNGSSSNR
SNSSNNNRSSKGKEMLKKEAQREGGRECGLVIAICGGKGTGKSTFGRYLA
HRFLASLPPALPPSLPPSVAYLDCDVGQPELTPSGLVSLSLLSNSLPPTT
FPLLGPPTPTAPSRPPSRPPSPLPPPPLLLPRGHHPPP*
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mRNA from alignment at chr21:105407..107164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00330.1 ID=NO21G00330.1|Name=NO21G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp|location=Sequence derived from alignment at chr21:105407..107164- (Nannochloropsis oceanica)
ATGCCACGACGGAGACGAAAGCGATCCCGGTCATGCAGCGTGGGCAGCAA
CAGCGGCGGCACATCGGCGGGTAAGCGAGGTGGGCGTAGCAAACGGAGCA
GTAAGGAGCAGGAGATCAAGCGGCATGAGGAGGAGGAGGAGGAGGAGGAG
GAGGACGACGACGACGAGGAGGAGAAAATGGAAGACGATGAGAGCTGCCA
AATCATAAATGAGGACGAGGATGAGGACGGGAACGTAGAGGAGGAAGAGG
GGGCAGTCCAAAAAGCAGTGGAATCGACAGCTGCAGCTGCACCAGGTCTG
TCACCAACACCAGTTCTGGGTCATACTCCCTCTTACAAGCGACTTCGGTC
ATGGCGAGACCCCGAGAAGAAGCCACAAGGCGGCATGTTCCTGGGCATGG
AGGTATGTCCTGATAGAGCAGGCTGTCCCTCCCTCCCTCTCTCCCTCCCT
CTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTTCCTCCTCCACCCCCCC
CCTCATCTGTGTCCCATTTTATTCAAACAGGCCGGTGAATCCTGCTGCTT
GGTGGGCAGCATGGGGATCCATGTGCTGAGAGGGGAGGTCGATATTCTGG
GGCACGCGTTACGAGCGCCAATGACAGGGCCTGTGCCCATGCACTCACCC
AAGTGGATGTCTTCCCTCGTCATCACTGCCTCCTCCTCATCGTCTTCCTC
GTCACCTGAGAACAGCAGCAATATCAATTTTCTTCCCTCCTCGCTTGCCT
CCTCCTCTCTTCCCGTCCTCCTCCATCTCACCCCTGTCTCAACTTCCATC
TGCCGCTTACCTCGCTTCTTGACGGCCTACGACGATGCTGAGGCCCTGTG
GGCACGTCACAGCCCTCCTCCTCCTTCCCCTCCTCCTCTATCTCCTGCTC
CCCTTCCCCCATTCGAAAGTGGAAAGGACGCGAAGCAAGATAGAGAAGAG
GAGCAGCACCAGCATCAGGACGAGGATAATGATGGGTCGGTAATTTTGCA
CCTACCCGGAGCCATTGTGATGGAGGAAAGGGTCTTAGTGGAGTGCTTGG
GCTTGCGGCCCTTGCACATCCCGCAATCCTGGAAAAATACGGCGGATGAG
GTGCGTTTTGGTTCTTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTCC
CTCCCTCCCGCCCTTCTTTTTGGCGCATTTACCTTTTCATCCCAGCTCAA
ACACTCTCCACCTCTCCCCCCGTCCCACCCTCCGTCCCTCCTTCCTTCCC
TCCCTCCACCCAGATCATCTCTTTGCAGGCCACTGCTCAGGGAACCTCCA
GCCCAGCCACCGCCACCACCAACGGCAGCAGCAGCAACAGGAGTAATAGC
AGCAACAACAACAGAAGTAGCAAGGGGAAAGAAATGCTAAAGAAAGAAGC
ACAGAGGGAGGGAGGGAGGGAGTGTGGGCTCGTCATCGCGATTTGTGGCG
GGAAAGGCACGGGTAAATCCACTTTTGGCCGCTACCTCGCCCATCGTTTC
CTGGCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTTCCTCCTTCCGTCGC
CTACCTCGACTGTGACGTCGGCCAGCCGGAGTTGACTCCCTCAGGGCTCG
TCTCCCTCTCCCTGCTCTCTAACTCCCTCCCTCCCACCACCTTTCCCCTC
CTTGGCCCCCCCACACCCACTGCTCCTTCCCGTCCTCCCTCCCGCCCTCC
CTCCCCCCTCCCTCCCCCTCCTCTCCTTCTTCCTCGGGGACATCACCCCC
CGCCATGA
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Coding sequence (CDS) from alignment at chr21:105407..107164-

>NO21G00330.1 ID=NO21G00330.1|Name=NO21G00330.1|organism=Nannochloropsis oceanica|type=CDS|length=1467bp|location=Sequence derived from alignment at chr21:105407..107164- (Nannochloropsis oceanica)
ATGCCACGACGGAGACGAAAGCGATCCCGGTCATGCAGCGTGGGCAGCAA
CAGCGGCGGCACATCGGCGGGTAAGCGAGGTGGGCGTAGCAAACGGAGCA
GTAAGGAGCAGGAGATCAAGCGGCATGAGGAGGAGGAGGAGGAGGAGGAG
GAGGACGACGACGACGAGGAGGAGAAAATGGAAGACGATGAGAGCTGCCA
AATCATAAATGAGGACGAGGATGAGGACGGGAACGTAGAGGAGGAAGAGG
GGGCAGTCCAAAAAGCAGTGGAATCGACAGCTGCAGCTGCACCAGGTCTG
TCACCAACACCAGTTCTGGGTCATACTCCCTCTTACAAGCGACTTCGGTC
ATGGCGAGACCCCGAGAAGAAGCCACAAGGCGGCATGTTCCTGGGCATGG
AGGCCGGTGAATCCTGCTGCTTGGTGGGCAGCATGGGGATCCATGTGCTG
AGAGGGGAGGTCGATATTCTGGGGCACGCGTTACGAGCGCCAATGACAGG
GCCTGTGCCCATGCACTCACCCAAGTGGATGTCTTCCCTCGTCATCACTG
CCTCCTCCTCATCGTCTTCCTCGTCACCTGAGAACAGCAGCAATATCAAT
TTTCTTCCCTCCTCGCTTGCCTCCTCCTCTCTTCCCGTCCTCCTCCATCT
CACCCCTGTCTCAACTTCCATCTGCCGCTTACCTCGCTTCTTGACGGCCT
ACGACGATGCTGAGGCCCTGTGGGCACGTCACAGCCCTCCTCCTCCTTCC
CCTCCTCCTCTATCTCCTGCTCCCCTTCCCCCATTCGAAAGTGGAAAGGA
CGCGAAGCAAGATAGAGAAGAGGAGCAGCACCAGCATCAGGACGAGGATA
ATGATGGGTCGGTAATTTTGCACCTACCCGGAGCCATTGTGATGGAGGAA
AGGGTCTTAGTGGAGTGCTTGGGCTTGCGGCCCTTGCACATCCCGCAATC
CTGGAAAAATACGGCGGATGAGATCATCTCTTTGCAGGCCACTGCTCAGG
GAACCTCCAGCCCAGCCACCGCCACCACCAACGGCAGCAGCAGCAACAGG
AGTAATAGCAGCAACAACAACAGAAGTAGCAAGGGGAAAGAAATGCTAAA
GAAAGAAGCACAGAGGGAGGGAGGGAGGGAGTGTGGGCTCGTCATCGCGA
TTTGTGGCGGGAAAGGCACGGGTAAATCCACTTTTGGCCGCTACCTCGCC
CATCGTTTCCTGGCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTTCCTCC
TTCCGTCGCCTACCTCGACTGTGACGTCGGCCAGCCGGAGTTGACTCCCT
CAGGGCTCGTCTCCCTCTCCCTGCTCTCTAACTCCCTCCCTCCCACCACC
TTTCCCCTCCTTGGCCCCCCCACACCCACTGCTCCTTCCCGTCCTCCCTC
CCGCCCTCCCTCCCCCCTCCCTCCCCCTCCTCTCCTTCTTCCTCGGGGAC
ATCACCCCCCGCCATGA
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Synonyms
Publications