NO21G00300, NO21G00300 (gene) Nannochloropsis oceanica

Overview
NameNO21G00300
Unique NameNO21G00300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2822
Alignment locationchr21:100657..103478 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:100657..103478 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013885DUF1764_euk
Homology
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BLAST of NO21G00300 vs. NCBI_GenBank
Match: EWM20684.1 (Protein of unknown function DUF1764, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 105.9 bits (263), Expect = 3.500e-19
Identity = 43/49 (87.76%), Postives = 49/49 (100.00%), Query Frame = 0 
Query:  135 QRYDPKRDDPDVRPWKRDSSGMPIYDPDSMRVGKGGGTSLCPFDCNCCF 184
            +RYDP+RDDPDVRPWKRD++GMPIYDP+SMRVGKGGGT+LCPFDCNCCF
Sbjct:  118 RRYDPQRDDPDVRPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCF 166
The following BLAST results are available for this feature:
BLAST of NO21G00300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20684.13.500e-1987.76Protein of unknown function DUF1764, eukaryotic [N... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL029nonsL029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR099ngnoR099Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007424NSK007424Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00300.1NO21G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606206gene_9503Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100517g1gene9721Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00300.1NO21G00300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00300 ID=NO21G00300|Name=NO21G00300|organism=Nannochloropsis oceanica|type=gene|length=2822bp
ATGGGCAAGAAGCGGGGACTCGTCGAGGCCGAGGAGGCGGCAGCGGTCCC
ACCACACCACCAGCAGCAGCACCCCTGCGACGACAAGGTCAAGGGAGACA
CCAATATCAAACGACAGGAGGCGAAGGATGCGGGGGAATTGAAAAAAAAA
AAGAAGATAAAAAAGCTGAAGCTGAAGGCTACGACTACATCAGAGGTGGG
AGAGGCAAATgtacgtgtgtcagggatactgtgcgagtgtgcctacgacg
aatgtatggatccattgatgaacgtagagagcgcatcctatccttgtggg
ggggagcgggtttagatgcaggcacgaggcagccgtcgtcatagggggca
ccctccattcctcctatttgaatgctctcttcacctcttcctcctttccg
ctgagcagtaccgcttgattgtacctcattctacgcactgcatttttctt
cctctttcatccgacctctccgagctccctttccaacagGCTGACCCACC
TGTAACTGCCACCCAAGCCGTGGCCGAAATCGACGATCTTTTTGCAGGTC
TCTCCCGCCACAAACAAACCGTTGCTGCTGCAGCTGCTGCTGCAGCAGCT
GCAGAAATCAAGAAGAAGAAAAAAGAGCAGGAATTGAAGCAGAAGAATTC
GGAGAGAGAGGCGAGGGAGGGGAGAGAGGGACAGAGGTATGATCCAAAAA
GAGACGACCCGGACGTTCGGCCATgtaagtaaagttaagggaggggggaa
gggctaggggcagggaaggatagaggggagaaaggaaaagtgcaacagga
tcacagtaatgtggatgagggaaaacaggaggatggaatggagtgaagca
aagcaaagaggatggggctggaaagatgcgaaagagaaacttcataagat
gcttcacttaggcatggaagagagggcagcgtgcacggggatcctataat
tcacacacgatgatacccccatccaccaatcaaacgcaattaaacatcaa
accagGGAAGCGGGACTCGTCGGGCATGCCAATCTACGATCCGGACTCGA
TGCGCGTGGGCAAAGGTGGGGGCACGTCCCTATGTCCGTTTGACTGCAAT
TGCTGCTTTGgttagttgagggtttctctgaaattaggggaagaagagga
gggggggaaagaaaaaatatcgcgggttacaaaaaattgcattttcttta
gtgatgttgctgagatgcacttcattcagatcgtcgcctgcgtgggacct
gtcgagtagcctgatttgacttgccacgatgccaccatgatcatgaaaca
gggccgaaaatattgcttgattaaacctacgttgttacgcacagatggac
accctaaagttggaaaaagcgacttgaaagcgctacgatgtgaaaaagtt
aaggcactttcccttctcccaatgcaagaaataacgcgcgaagggataga
agtcctgtgtgcggcctaccgtgctgctgttgttgcttcagcctcaagct
cccacgacaccgcggccactgctgattttcacatctaatcctctgcatcc
atacagATACAGGGAAAGTGGAAGCCACAACTATGGCCGCTGCTCGGTCC
CTGACTTGTCTCGTCCTCTCCTCCGCATCATGCCTCCTCGTACTGCTTTC
CCTGCTCCTACCCCAAAGCACCGTAACCTTCTTCCTCCTCCCCAATGGAC
ACAGCACCATCAGCATCAGCAGTACAAGAATAAGAGCTCAAACTCGCAGC
GTTGTGGCCACCTCCTCTCCTAGCTCCCCCCTTTTCTCCTCCTCCTCCTT
CTCCTCCTCTACCTGTTTCCCCCAGATGATGAGAAAGCAGCAACAGCATG
ATGACTTAGCTGAGGAGCAGCAACTGCAGCAGAAGAGCGGCGTCCTACCT
CGCCTGGGTCGCATTGTCAAGATGACAATTTTCCCCTCTATTGTGACTGC
CCTAGGGATGGCCGTCCAGCCCGCGCATGCTTACCGGGATATGCGGATGT
CACCTGAGACACGTATCGTCGCTGCCAgtaagtacccgtaccccccctcc
ttccctccatccatccatccatcaaacttgtccgggtgtgtcatagcatg
ttctgcacgttggttgacttcattgtcttctcttgaagattccatcccat
tcactcactcctccctccctgtctctctttccttcctccctccctccctc
tttccctgtctccttcccaccctccttcagTCCTCGGTCGCTTCATCATC
CCCATTGGCCTTTGTCTCTACTTTGCCGTCAACCGAAAACGCATGGCCCG
CGAAGAGGCCACACGGGTCAAGGCAGCCCTAGACAAGGAGCAACAAAAGA
AGGAGGCCTACCTGGCCGAGATGAAAGAGCAGGGGTTTAATTTAGGCAGC
GTGGGGGGCAGTCTGACGAAGGAAGAGGAGGACATGATCAGCAGGGTGGA
AGAGGGGACGCAGCTTATGGTGACTGAGAAAGgtaagggtgccaaaatcg
agggagagtttccttccttctcttcaatctgcttggtcagtggactcacc
cctccgaccctcccgccctccctcccgccctccctccctccctccctcct
tcccttcctccctcgcctgcgcagCTGCCTGGGTTAAGCTACTGCAGCGA
GCTCAGTACTCGCGCGACGTGGTGGATGGCAAGGCACAGCCAAATGCCGA
GATAGCCATCATGACGAAGAAGGAGCTGAAACGGGTGGTAAATGCGAACA
AGACGGTCAAAGCCGCGGGATTTAAGTCCGAGTAAAGAGGGAAGGGAAGC
AGGAGGGGGGCAGGGAGGGAGG
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protein sequence of NO21G00300.1

>NO21G00300.1-protein ID=NO21G00300.1-protein|Name=NO21G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MGKKRGLVEAEEAAAVPPHHQQQHPCDDKVKGDTNIKRQEAKDAGELKKK
KKIKKLKLKATTTSEVGEANADPPVTATQAVAEIDDLFAGLSRHKQTVAA
AAAAAAAAEIKKKKKEQELKQKNSEREAREGREGQRYDPKRDDPDVRPWK
RDSSGMPIYDPDSMRVGKGGGTSLCPFDCNCCFDTGKVEATTMAAARSLT
CLVLSSASCLLVLLSLLLPQSTVTFFLLPNGHSTISISSTRIRAQTRSVV
ATSSPSSPLFSSSSFSSSTCFPQMMRKQQQHDDLAEEQQLQQKSGVLPRL
GRIVKMTIFPSIVTALGMAVQPAHAYRDMRMSPETRIVAAILGRFIIPIG
LCLYFAVNRKRMAREEATRVKAALDKEQQKKEAYLAEMKEQGFNLGSVGG
SLTKEEEDMISRVEEGTQLMVTEKAAWVKLLQRAQYSRDVVDGKAQPNAE
IAIMTKKELKRVVNANKTVKAAGFKSE*
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Synonyms
Publications