NO21G00300.1, NO21G00300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00300.1
Unique NameNO21G00300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1471
Alignment locationchr21:100657..103478 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:100657..103478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00300.1 vs.
Match: EWM20684.1 (Protein of unknown function DUF1764, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 104.4 bits (259), Expect = 1.000e-18
Identity = 73/167 (43.71%), Postives = 93/167 (55.69%), Query Frame = 0 
Query:   17 PPHHQQQHPCDDKVKGDTNIKRQEAKDAGELKKKKKIKKLKLKATTTSEVGEANADPPVTATQAVAEIDDLFAGLSRHKQTVAAAAAAAAAAEIKKKKKEQELKQKNSEREAREGREGQRYDPKRDDPDVRPWKRDSSGMPIYDPDSMRVGKGGGTSLCPFDCNCCF 184
            PP  Q +   D +   + +   +E  D  +    K+ K L   A                  QA  EID LF  L++ K+ VAAA+A    A +K KK +         +      EG+RYDP+RDDPDVRPWKRD++GMPIYDP+SMRVGKGGGT+LCPFDCNCCF
Sbjct:   22 PPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVR----------------QAGKEIDGLFNDLTQRKR-VAAASATTKKAVVKIKKADSRPPSHTVGKN-----EGRRYDPQRDDPDVRPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCF 166
The following BLAST results are available for this feature:
BLAST of NO21G00300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20684.11.000e-1843.71Protein of unknown function DUF1764, eukaryotic [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00300NO21G00300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00300.1NO21G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00300.1.cds1NO21G00300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00300.1.cds2NO21G00300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00300.1.cds3NO21G00300.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00300.1.cds4NO21G00300.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00300.1.cds5NO21G00300.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00300.1.cds6NO21G00300.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00300.1 ID=NO21G00300.1|Name=NO21G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1471bp
ATGGGCAAGAAGCGGGGACTCGTCGAGGCCGAGGAGGCGGCAGCGGTCCC
ACCACACCACCAGCAGCAGCACCCCTGCGACGACAAGGTCAAGGGAGACA
CCAATATCAAACGACAGGAGGCGAAGGATGCGGGGGAATTGAAAAAAAAA
AAGAAGATAAAAAAGCTGAAGCTGAAGGCTACGACTACATCAGAGGTGGG
AGAGGCAAATGCTGACCCACCTGTAACTGCCACCCAAGCCGTGGCCGAAA
TCGACGATCTTTTTGCAGGTCTCTCCCGCCACAAACAAACCGTTGCTGCT
GCAGCTGCTGCTGCAGCAGCTGCAGAAATCAAGAAGAAGAAAAAAGAGCA
GGAATTGAAGCAGAAGAATTCGGAGAGAGAGGCGAGGGAGGGGAGAGAGG
GACAGAGGTATGATCCAAAAAGAGACGACCCGGACGTTCGGCCATGGAAG
CGGGACTCGTCGGGCATGCCAATCTACGATCCGGACTCGATGCGCGTGGG
CAAAGGTGGGGGCACGTCCCTATGTCCGTTTGACTGCAATTGCTGCTTTG
ATACAGGGAAAGTGGAAGCCACAACTATGGCCGCTGCTCGGTCCCTGACT
TGTCTCGTCCTCTCCTCCGCATCATGCCTCCTCGTACTGCTTTCCCTGCT
CCTACCCCAAAGCACCGTAACCTTCTTCCTCCTCCCCAATGGACACAGCA
CCATCAGCATCAGCAGTACAAGAATAAGAGCTCAAACTCGCAGCGTTGTG
GCCACCTCCTCTCCTAGCTCCCCCCTTTTCTCCTCCTCCTCCTTCTCCTC
CTCTACCTGTTTCCCCCAGATGATGAGAAAGCAGCAACAGCATGATGACT
TAGCTGAGGAGCAGCAACTGCAGCAGAAGAGCGGCGTCCTACCTCGCCTG
GGTCGCATTGTCAAGATGACAATTTTCCCCTCTATTGTGACTGCCCTAGG
GATGGCCGTCCAGCCCGCGCATGCTTACCGGGATATGCGGATGTCACCTG
AGACACGTATCGTCGCTGCCATCCTCGGTCGCTTCATCATCCCCATTGGC
CTTTGTCTCTACTTTGCCGTCAACCGAAAACGCATGGCCCGCGAAGAGGC
CACACGGGTCAAGGCAGCCCTAGACAAGGAGCAACAAAAGAAGGAGGCCT
ACCTGGCCGAGATGAAAGAGCAGGGGTTTAATTTAGGCAGCGTGGGGGGC
AGTCTGACGAAGGAAGAGGAGGACATGATCAGCAGGGTGGAAGAGGGGAC
GCAGCTTATGGTGACTGAGAAAGCTGCCTGGGTTAAGCTACTGCAGCGAG
CTCAGTACTCGCGCGACGTGGTGGATGGCAAGGCACAGCCAAATGCCGAG
ATAGCCATCATGACGAAGAAGGAGCTGAAACGGGTGGTAAATGCGAACAA
GACGGTCAAAGCCGCGGGATTTAAGTCCGAGTAAAGAGGGAAGGGAAGCA
GGAGGGGGGCAGGGAGGGAGG
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protein sequence of NO21G00300.1

>NO21G00300.1-protein ID=NO21G00300.1-protein|Name=NO21G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MGKKRGLVEAEEAAAVPPHHQQQHPCDDKVKGDTNIKRQEAKDAGELKKK
KKIKKLKLKATTTSEVGEANADPPVTATQAVAEIDDLFAGLSRHKQTVAA
AAAAAAAAEIKKKKKEQELKQKNSEREAREGREGQRYDPKRDDPDVRPWK
RDSSGMPIYDPDSMRVGKGGGTSLCPFDCNCCFDTGKVEATTMAAARSLT
CLVLSSASCLLVLLSLLLPQSTVTFFLLPNGHSTISISSTRIRAQTRSVV
ATSSPSSPLFSSSSFSSSTCFPQMMRKQQQHDDLAEEQQLQQKSGVLPRL
GRIVKMTIFPSIVTALGMAVQPAHAYRDMRMSPETRIVAAILGRFIIPIG
LCLYFAVNRKRMAREEATRVKAALDKEQQKKEAYLAEMKEQGFNLGSVGG
SLTKEEEDMISRVEEGTQLMVTEKAAWVKLLQRAQYSRDVVDGKAQPNAE
IAIMTKKELKRVVNANKTVKAAGFKSE*
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mRNA from alignment at chr21:100657..103478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00300.1 ID=NO21G00300.1|Name=NO21G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2822bp|location=Sequence derived from alignment at chr21:100657..103478+ (Nannochloropsis oceanica)
ATGGGCAAGAAGCGGGGACTCGTCGAGGCCGAGGAGGCGGCAGCGGTCCC
ACCACACCACCAGCAGCAGCACCCCTGCGACGACAAGGTCAAGGGAGACA
CCAATATCAAACGACAGGAGGCGAAGGATGCGGGGGAATTGAAAAAAAAA
AAGAAGATAAAAAAGCTGAAGCTGAAGGCTACGACTACATCAGAGGTGGG
AGAGGCAAATGTACGTGTGTCAGGGATACTGTGCGAGTGTGCCTACGACG
AATGTATGGATCCATTGATGAACGTAGAGAGCGCATCCTATCCTTGTGGG
GGGGAGCGGGTTTAGATGCAGGCACGAGGCAGCCGTCGTCATAGGGGGCA
CCCTCCATTCCTCCTATTTGAATGCTCTCTTCACCTCTTCCTCCTTTCCG
CTGAGCAGTACCGCTTGATTGTACCTCATTCTACGCACTGCATTTTTCTT
CCTCTTTCATCCGACCTCTCCGAGCTCCCTTTCCAACAGGCTGACCCACC
TGTAACTGCCACCCAAGCCGTGGCCGAAATCGACGATCTTTTTGCAGGTC
TCTCCCGCCACAAACAAACCGTTGCTGCTGCAGCTGCTGCTGCAGCAGCT
GCAGAAATCAAGAAGAAGAAAAAAGAGCAGGAATTGAAGCAGAAGAATTC
GGAGAGAGAGGCGAGGGAGGGGAGAGAGGGACAGAGGTATGATCCAAAAA
GAGACGACCCGGACGTTCGGCCATGTAAGTAAAGTTAAGGGAGGGGGGAA
GGGCTAGGGGCAGGGAAGGATAGAGGGGAGAAAGGAAAAGTGCAACAGGA
TCACAGTAATGTGGATGAGGGAAAACAGGAGGATGGAATGGAGTGAAGCA
AAGCAAAGAGGATGGGGCTGGAAAGATGCGAAAGAGAAACTTCATAAGAT
GCTTCACTTAGGCATGGAAGAGAGGGCAGCGTGCACGGGGATCCTATAAT
TCACACACGATGATACCCCCATCCACCAATCAAACGCAATTAAACATCAA
ACCAGGGAAGCGGGACTCGTCGGGCATGCCAATCTACGATCCGGACTCGA
TGCGCGTGGGCAAAGGTGGGGGCACGTCCCTATGTCCGTTTGACTGCAAT
TGCTGCTTTGGTTAGTTGAGGGTTTCTCTGAAATTAGGGGAAGAAGAGGA
GGGGGGGAAAGAAAAAATATCGCGGGTTACAAAAAATTGCATTTTCTTTA
GTGATGTTGCTGAGATGCACTTCATTCAGATCGTCGCCTGCGTGGGACCT
GTCGAGTAGCCTGATTTGACTTGCCACGATGCCACCATGATCATGAAACA
GGGCCGAAAATATTGCTTGATTAAACCTACGTTGTTACGCACAGATGGAC
ACCCTAAAGTTGGAAAAAGCGACTTGAAAGCGCTACGATGTGAAAAAGTT
AAGGCACTTTCCCTTCTCCCAATGCAAGAAATAACGCGCGAAGGGATAGA
AGTCCTGTGTGCGGCCTACCGTGCTGCTGTTGTTGCTTCAGCCTCAAGCT
CCCACGACACCGCGGCCACTGCTGATTTTCACATCTAATCCTCTGCATCC
ATACAGATACAGGGAAAGTGGAAGCCACAACTATGGCCGCTGCTCGGTCC
CTGACTTGTCTCGTCCTCTCCTCCGCATCATGCCTCCTCGTACTGCTTTC
CCTGCTCCTACCCCAAAGCACCGTAACCTTCTTCCTCCTCCCCAATGGAC
ACAGCACCATCAGCATCAGCAGTACAAGAATAAGAGCTCAAACTCGCAGC
GTTGTGGCCACCTCCTCTCCTAGCTCCCCCCTTTTCTCCTCCTCCTCCTT
CTCCTCCTCTACCTGTTTCCCCCAGATGATGAGAAAGCAGCAACAGCATG
ATGACTTAGCTGAGGAGCAGCAACTGCAGCAGAAGAGCGGCGTCCTACCT
CGCCTGGGTCGCATTGTCAAGATGACAATTTTCCCCTCTATTGTGACTGC
CCTAGGGATGGCCGTCCAGCCCGCGCATGCTTACCGGGATATGCGGATGT
CACCTGAGACACGTATCGTCGCTGCCAGTAAGTACCCGTACCCCCCCTCC
TTCCCTCCATCCATCCATCCATCAAACTTGTCCGGGTGTGTCATAGCATG
TTCTGCACGTTGGTTGACTTCATTGTCTTCTCTTGAAGATTCCATCCCAT
TCACTCACTCCTCCCTCCCTGTCTCTCTTTCCTTCCTCCCTCCCTCCCTC
TTTCCCTGTCTCCTTCCCACCCTCCTTCAGTCCTCGGTCGCTTCATCATC
CCCATTGGCCTTTGTCTCTACTTTGCCGTCAACCGAAAACGCATGGCCCG
CGAAGAGGCCACACGGGTCAAGGCAGCCCTAGACAAGGAGCAACAAAAGA
AGGAGGCCTACCTGGCCGAGATGAAAGAGCAGGGGTTTAATTTAGGCAGC
GTGGGGGGCAGTCTGACGAAGGAAGAGGAGGACATGATCAGCAGGGTGGA
AGAGGGGACGCAGCTTATGGTGACTGAGAAAGGTAAGGGTGCCAAAATCG
AGGGAGAGTTTCCTTCCTTCTCTTCAATCTGCTTGGTCAGTGGACTCACC
CCTCCGACCCTCCCGCCCTCCCTCCCGCCCTCCCTCCCTCCCTCCCTCCT
TCCCTTCCTCCCTCGCCTGCGCAGCTGCCTGGGTTAAGCTACTGCAGCGA
GCTCAGTACTCGCGCGACGTGGTGGATGGCAAGGCACAGCCAAATGCCGA
GATAGCCATCATGACGAAGAAGGAGCTGAAACGGGTGGTAAATGCGAACA
AGACGGTCAAAGCCGCGGGATTTAAGTCCGAGTAAAGAGGGAAGGGAAGC
AGGAGGGGGGCAGGGAGGGAGG
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Coding sequence (CDS) from alignment at chr21:100657..103478+

>NO21G00300.1 ID=NO21G00300.1|Name=NO21G00300.1|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at chr21:100657..103478+ (Nannochloropsis oceanica)
ATGGGCAAGAAGCGGGGACTCGTCGAGGCCGAGGAGGCGGCAGCGGTCCC
ACCACACCACCAGCAGCAGCACCCCTGCGACGACAAGGTCAAGGGAGACA
CCAATATCAAACGACAGGAGGCGAAGGATGCGGGGGAATTGAAAAAAAAA
AAGAAGATAAAAAAGCTGAAGCTGAAGGCTACGACTACATCAGAGGTGGG
AGAGGCAAATGCTGACCCACCTGTAACTGCCACCCAAGCCGTGGCCGAAA
TCGACGATCTTTTTGCAGGTCTCTCCCGCCACAAACAAACCGTTGCTGCT
GCAGCTGCTGCTGCAGCAGCTGCAGAAATCAAGAAGAAGAAAAAAGAGCA
GGAATTGAAGCAGAAGAATTCGGAGAGAGAGGCGAGGGAGGGGAGAGAGG
GACAGAGGTATGATCCAAAAAGAGACGACCCGGACGTTCGGCCATGGAAG
CGGGACTCGTCGGGCATGCCAATCTACGATCCGGACTCGATGCGCGTGGG
CAAAGGTGGGGGCACGTCCCTATGTCCGTTTGACTGCAATTGCTGCTTTG
ATACAGGGAAAGTGGAAGCCACAACTATGGCCGCTGCTCGGTCCCTGACT
TGTCTCGTCCTCTCCTCCGCATCATGCCTCCTCGTACTGCTTTCCCTGCT
CCTACCCCAAAGCACCGTAACCTTCTTCCTCCTCCCCAATGGACACAGCA
CCATCAGCATCAGCAGTACAAGAATAAGAGCTCAAACTCGCAGCGTTGTG
GCCACCTCCTCTCCTAGCTCCCCCCTTTTCTCCTCCTCCTCCTTCTCCTC
CTCTACCTGTTTCCCCCAGATGATGAGAAAGCAGCAACAGCATGATGACT
TAGCTGAGGAGCAGCAACTGCAGCAGAAGAGCGGCGTCCTACCTCGCCTG
GGTCGCATTGTCAAGATGACAATTTTCCCCTCTATTGTGACTGCCCTAGG
GATGGCCGTCCAGCCCGCGCATGCTTACCGGGATATGCGGATGTCACCTG
AGACACGTATCGTCGCTGCCATCCTCGGTCGCTTCATCATCCCCATTGGC
CTTTGTCTCTACTTTGCCGTCAACCGAAAACGCATGGCCCGCGAAGAGGC
CACACGGGTCAAGGCAGCCCTAGACAAGGAGCAACAAAAGAAGGAGGCCT
ACCTGGCCGAGATGAAAGAGCAGGGGTTTAATTTAGGCAGCGTGGGGGGC
AGTCTGACGAAGGAAGAGGAGGACATGATCAGCAGGGTGGAAGAGGGGAC
GCAGCTTATGGTGACTGAGAAAGCTGCCTGGGTTAAGCTACTGCAGCGAG
CTCAGTACTCGCGCGACGTGGTGGATGGCAAGGCACAGCCAAATGCCGAG
ATAGCCATCATGACGAAGAAGGAGCTGAAACGGGTGGTAAATGCGAACAA
GACGGTCAAAGCCGCGGGATTTAAGTCCGAGTAA
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Synonyms
Publications