NO21G00180, NO21G00180 (gene) Nannochloropsis oceanica

Overview
NameNO21G00180
Unique NameNO21G00180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length768
Alignment locationchr21:57240..58007 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:57240..58007 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051087chaperone binding
Homology
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BLAST of NO21G00180 vs. NCBI_GenBank
Match: EWM20674.1 (hypothetical protein Naga_100420g4 [Nannochloropsis gaditana])

HSP 1 Score: 118.2 bits (295), Expect = 3.600e-23
Identity = 126/246 (51.22%), Postives = 146/246 (59.35%), Query Frame = 0 
Query:   24 GWFAFTPSGQVTIKYIWEGDKEGARKKVAMKQLNYLKXXXXXXXXXXXXXXXXXXXXXXXXGVSKKGRRDRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKKFKNKWDEYDVEEELRRLEREDEKEGEEGGAQTTIIGNGNENGEVGHRGGGSRRWREN--------------XXXXXXXXXXXXXTWGRMRTEVGQLQSDLEKAMGHLDSVRGDEEVKQRRKGLVLESHALFQALDAVTQRLI 256
            GW   T SG+ T+ YIWEGD++ ARK+VA++QL +L+                                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX +KFKNKWDEYDVE EL RLE+E+++EG                                              XXXXXXXXXXXX T G++RTEVG+LQSDLEKAMGHLDSVRGDEEV++RRK LVL SH LF  LD VTQRL+
Sbjct:   19 GWLTLTSSGRATLTYIWEGDRDKARKRVALRQLKFLRAELTSLADRIERARERTNKALR----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKFKNKWDEYDVERELERLEQEEKREGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSVEGXXXXXXXXXXXXXXXXXXXXXXPTLGQVRTEVGELQSDLEKAMGHLDSVRGDEEVRRRRKALVLRSHELFTDLDEVTQRLL 260
The following BLAST results are available for this feature:
BLAST of NO21G00180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20674.13.600e-2351.22hypothetical protein Naga_100420g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR093ncniR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR100ngnoR100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007556NSK007556Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00180.1NO21G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613021gene_11029Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|606268gene_9517Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100420g4gene9733Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00180.1NO21G00180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00180 ID=NO21G00180|Name=NO21G00180|organism=Nannochloropsis oceanica|type=gene|length=768bp
ATGCCCTCACCCCTCTCAACCGCGACCGCCACCACCCTCCTCCTCCTCGC
TGTCGCCGTCACTGCCACCGGCTGGTTCGCCTTTACGCCTTCAGGTCAAG
TCACCATCAAGTACATATGGGAGGGAGACAAAGAGGGGGCCAGAAAAAAG
GTCGCAATGAAACAGCTTAATTACCTGAAAAAAGAGCTGAGTTACCTGGG
AGCAAGGATTGAGCGGGCAGCTAGACAGGTGGAAGAGGCGTTTAGGGAGG
TGGGGGTTAGCAAGAAAGGCAGGAGGGATAGAGATGGGGGAGACGGGGGA
GAGGATGGGGAGGAGGAGGGTTGGGAGGAGAGCGCAGCATCTACAAGTGC
CTACTATCATTTTAGTTCGTCTGGGAAGAAATTCAAGAATAAATGGGATG
AGTACGACGTGGAGGAGGAGTTGAGGAGATTGGAGAGAGAAGACGAGAAA
GAGGGCGAGGAAGGCGGGGCACAAACGACGATAATTGGCAATGGGAACGA
GAATGGAGAAGTCGGACACAGAGGAGGAGGGAGCAGAAGATGGAGAGAAA
ATGGAAATGGGAGGGAGGGAGGAAGAGAGGGAGGAAAGCCGACGTGGGGA
AGGATGCGGACGGAGGTGGGGCAGTTGCAGAGTGATTTGGAGAAGGCGAT
GGGCCATTTGGACAGTGTGAGGGGGGACGAGGAGGTGAAACAGAGGAGAA
AAGGTTTGGTGCTGGAGAGCCACGCTTTGTTCCAGGCCTTGGATGCGGTG
ACCCAGCGATTGATCTGA
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protein sequence of NO21G00180.1

>NO21G00180.1-protein ID=NO21G00180.1-protein|Name=NO21G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MPSPLSTATATTLLLLAVAVTATGWFAFTPSGQVTIKYIWEGDKEGARKK
VAMKQLNYLKKELSYLGARIERAARQVEEAFREVGVSKKGRRDRDGGDGG
EDGEEEGWEESAASTSAYYHFSSSGKKFKNKWDEYDVEEELRRLEREDEK
EGEEGGAQTTIIGNGNENGEVGHRGGGSRRWRENGNGREGGREGGKPTWG
RMRTEVGQLQSDLEKAMGHLDSVRGDEEVKQRRKGLVLESHALFQALDAV
TQRLI*
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Synonyms
Publications