NO21G00180.1, NO21G00180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00180.1
Unique NameNO21G00180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length768
Alignment locationchr21:57240..58007 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:57240..58007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00180.1 vs.
Match: EWM20674.1 (hypothetical protein Naga_100420g4 [Nannochloropsis gaditana])

HSP 1 Score: 229.6 bits (584), Expect = 1.100e-56
Identity = 150/266 (56.39%), Postives = 185/266 (69.55%), Query Frame = 0 
Query:    6 STATATTLLLLAVAVTATGWFAFTPSGQVTIKYIWEGDKEGARKKVAMKQLNYLKKELSYLGARIERAARQVEEAFREVGVSKKGRRDRDGGDGGEDGE-EEGWEESAASTSAYYHFSSSGKKFKNKWDEYDVEEELRRLEREDEKEGE--------EGGAQTTIIGNGNENGEVGHRGG---GSRRWRENGNGREGGREGGK----PTWGRMRTEVGQLQSDLEKAMGHLDSVRGDEEVKQRRKGLVLESHALFQALDAVTQRLI 256
            STAT+T+ LLLA    A GW   T SG+ T+ YIWEGD++ ARK+VA++QL +L+ EL+ L  RIERA  +  +A R+    ++GR + +   G  +GE EEG  ESAASTSAYYHFSSSG+KFKNKWDEYDVE EL RLE+E+++EG         EG   +     G  NG++G  G    G R  R+ G GREG REGGK    PT G++RTEVG+LQSDLEKAMGHLDSVRGDEEV++RRK LVL SH LF  LD VTQRL+
Sbjct:    5 STATSTSFLLLA----AIGWLTLTSSGRATLTYIWEGDRDKARKRVALRQLKFLRAELTSLADRIERARERTNKALRK---EEEGRDEEEEEGGRREGEKEEG--ESAASTSAYYHFSSSGRKFKNKWDEYDVERELERLEQEEKREGNGEEKLGGGEGREGSEEEEGGEANGQIGREGRSVEGRREGRKEG-GREGEREGGKEKKRPTLGQVRTEVGELQSDLEKAMGHLDSVRGDEEVRRRRKALVLRSHELFTDLDEVTQRLL 260
The following BLAST results are available for this feature:
BLAST of NO21G00180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20674.11.100e-5656.39hypothetical protein Naga_100420g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00180NO21G00180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00180.1NO21G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00180.1.cds1NO21G00180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00180.1 ID=NO21G00180.1|Name=NO21G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=768bp
ATGCCCTCACCCCTCTCAACCGCGACCGCCACCACCCTCCTCCTCCTCGC
TGTCGCCGTCACTGCCACCGGCTGGTTCGCCTTTACGCCTTCAGGTCAAG
TCACCATCAAGTACATATGGGAGGGAGACAAAGAGGGGGCCAGAAAAAAG
GTCGCAATGAAACAGCTTAATTACCTGAAAAAAGAGCTGAGTTACCTGGG
AGCAAGGATTGAGCGGGCAGCTAGACAGGTGGAAGAGGCGTTTAGGGAGG
TGGGGGTTAGCAAGAAAGGCAGGAGGGATAGAGATGGGGGAGACGGGGGA
GAGGATGGGGAGGAGGAGGGTTGGGAGGAGAGCGCAGCATCTACAAGTGC
CTACTATCATTTTAGTTCGTCTGGGAAGAAATTCAAGAATAAATGGGATG
AGTACGACGTGGAGGAGGAGTTGAGGAGATTGGAGAGAGAAGACGAGAAA
GAGGGCGAGGAAGGCGGGGCACAAACGACGATAATTGGCAATGGGAACGA
GAATGGAGAAGTCGGACACAGAGGAGGAGGGAGCAGAAGATGGAGAGAAA
ATGGAAATGGGAGGGAGGGAGGAAGAGAGGGAGGAAAGCCGACGTGGGGA
AGGATGCGGACGGAGGTGGGGCAGTTGCAGAGTGATTTGGAGAAGGCGAT
GGGCCATTTGGACAGTGTGAGGGGGGACGAGGAGGTGAAACAGAGGAGAA
AAGGTTTGGTGCTGGAGAGCCACGCTTTGTTCCAGGCCTTGGATGCGGTG
ACCCAGCGATTGATCTGA
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protein sequence of NO21G00180.1

>NO21G00180.1-protein ID=NO21G00180.1-protein|Name=NO21G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MPSPLSTATATTLLLLAVAVTATGWFAFTPSGQVTIKYIWEGDKEGARKK
VAMKQLNYLKKELSYLGARIERAARQVEEAFREVGVSKKGRRDRDGGDGG
EDGEEEGWEESAASTSAYYHFSSSGKKFKNKWDEYDVEEELRRLEREDEK
EGEEGGAQTTIIGNGNENGEVGHRGGGSRRWRENGNGREGGREGGKPTWG
RMRTEVGQLQSDLEKAMGHLDSVRGDEEVKQRRKGLVLESHALFQALDAV
TQRLI*
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mRNA from alignment at chr21:57240..58007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00180.1 ID=NO21G00180.1|Name=NO21G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=768bp|location=Sequence derived from alignment at chr21:57240..58007- (Nannochloropsis oceanica)
ATGCCCTCACCCCTCTCAACCGCGACCGCCACCACCCTCCTCCTCCTCGC
TGTCGCCGTCACTGCCACCGGCTGGTTCGCCTTTACGCCTTCAGGTCAAG
TCACCATCAAGTACATATGGGAGGGAGACAAAGAGGGGGCCAGAAAAAAG
GTCGCAATGAAACAGCTTAATTACCTGAAAAAAGAGCTGAGTTACCTGGG
AGCAAGGATTGAGCGGGCAGCTAGACAGGTGGAAGAGGCGTTTAGGGAGG
TGGGGGTTAGCAAGAAAGGCAGGAGGGATAGAGATGGGGGAGACGGGGGA
GAGGATGGGGAGGAGGAGGGTTGGGAGGAGAGCGCAGCATCTACAAGTGC
CTACTATCATTTTAGTTCGTCTGGGAAGAAATTCAAGAATAAATGGGATG
AGTACGACGTGGAGGAGGAGTTGAGGAGATTGGAGAGAGAAGACGAGAAA
GAGGGCGAGGAAGGCGGGGCACAAACGACGATAATTGGCAATGGGAACGA
GAATGGAGAAGTCGGACACAGAGGAGGAGGGAGCAGAAGATGGAGAGAAA
ATGGAAATGGGAGGGAGGGAGGAAGAGAGGGAGGAAAGCCGACGTGGGGA
AGGATGCGGACGGAGGTGGGGCAGTTGCAGAGTGATTTGGAGAAGGCGAT
GGGCCATTTGGACAGTGTGAGGGGGGACGAGGAGGTGAAACAGAGGAGAA
AAGGTTTGGTGCTGGAGAGCCACGCTTTGTTCCAGGCCTTGGATGCGGTG
ACCCAGCGATTGATCTGA
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Coding sequence (CDS) from alignment at chr21:57240..58007-

>NO21G00180.1 ID=NO21G00180.1|Name=NO21G00180.1|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr21:57240..58007- (Nannochloropsis oceanica)
ATGCCCTCACCCCTCTCAACCGCGACCGCCACCACCCTCCTCCTCCTCGC
TGTCGCCGTCACTGCCACCGGCTGGTTCGCCTTTACGCCTTCAGGTCAAG
TCACCATCAAGTACATATGGGAGGGAGACAAAGAGGGGGCCAGAAAAAAG
GTCGCAATGAAACAGCTTAATTACCTGAAAAAAGAGCTGAGTTACCTGGG
AGCAAGGATTGAGCGGGCAGCTAGACAGGTGGAAGAGGCGTTTAGGGAGG
TGGGGGTTAGCAAGAAAGGCAGGAGGGATAGAGATGGGGGAGACGGGGGA
GAGGATGGGGAGGAGGAGGGTTGGGAGGAGAGCGCAGCATCTACAAGTGC
CTACTATCATTTTAGTTCGTCTGGGAAGAAATTCAAGAATAAATGGGATG
AGTACGACGTGGAGGAGGAGTTGAGGAGATTGGAGAGAGAAGACGAGAAA
GAGGGCGAGGAAGGCGGGGCACAAACGACGATAATTGGCAATGGGAACGA
GAATGGAGAAGTCGGACACAGAGGAGGAGGGAGCAGAAGATGGAGAGAAA
ATGGAAATGGGAGGGAGGGAGGAAGAGAGGGAGGAAAGCCGACGTGGGGA
AGGATGCGGACGGAGGTGGGGCAGTTGCAGAGTGATTTGGAGAAGGCGAT
GGGCCATTTGGACAGTGTGAGGGGGGACGAGGAGGTGAAACAGAGGAGAA
AAGGTTTGGTGCTGGAGAGCCACGCTTTGTTCCAGGCCTTGGATGCGGTG
ACCCAGCGATTGATCTGA
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Synonyms
Publications