NO21G00100, NO21G00100 (gene) Nannochloropsis oceanica

Overview
NameNO21G00100
Unique NameNO21G00100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length589
Alignment locationchr21:28404..28992 +

Link to JBrowse

Properties
Property NameValue
DescriptionNUDIX hydrolase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:28404..28992 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR015797NUDIX_hydrolase_dom-like
IPR000086NUDIX_hydrolase_dom
Homology
BLAST of NO21G00100 vs. NCBI_GenBank
Match: WP_031460144.1 (NUDIX hydrolase [Chloroflexus sp. MS-G])

HSP 1 Score: 68.9 bits (167), Expect = 8.800e-9
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0
Query:   17 KFLVFEQRKYGYERSSPNLAPIGGLVELGEETLAAAKRELQEEAGLVLSSWTPLGRYRISFTHGGFLERLF 88
            +F++F Q KY  E  S  LAP+GG +E GE+ L AA+RELQEE+G V + W  LGRY +    G  +  LF
Sbjct:   56 QFVLFRQEKYAVEGLS--LAPVGGYLEPGEDPLQAAQRELQEESGYVATEWEALGRYAVDGNRGAGIAHLF 124          
BLAST of NO21G00100 vs. NCBI_GenBank
Match: WP_012258952.1 (MULTISPECIES: NUDIX hydrolase [Chloroflexus] >YP_001636688.1 NUDIX hydrolase [Chloroflexus aurantiacus J-10-fl] >ABY36299.1 NUDIX hydrolase [Chloroflexus aurantiacus J-10-fl] >ACM54725.1 NUDIX hydrolase [Chloroflexus sp. Y-400-fl])

HSP 1 Score: 67.8 bits (164), Expect = 2.000e-8
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0
Query:   17 KFLVFEQRKYGYERSSPNLAPIGGLVELGEETLAAAKRELQEEAGLVLSSWTPLGRYRISFTHGGFLERLF 88
            +F++F Q KY  E  S  LAP+GG +E GE+ L AA+REL+EE+G V S W  LGRY +    G  +  LF
Sbjct:   56 RFVLFRQEKYAVEGLS--LAPVGGYLEPGEDPLLAAQRELREESGYVASEWECLGRYAVDGNRGAGVAHLF 124          
BLAST of NO21G00100 vs. NCBI_GenBank
Match: WP_015942426.1 (NUDIX hydrolase [Chloroflexus aggregans] >ACL26581.1 NUDIX hydrolase [Chloroflexus aggregans DSM 9485])

HSP 1 Score: 67.4 bits (163), Expect = 2.600e-8
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 0
Query:   17 KFLVFEQRKYGYERSSPNLAPIGGLVELGEETLAAAKRELQEEAGLVLSSWTPLGRYRISFTHGGFLERLF 88
            +F++F Q KY  E  S  LAP+GG +E GE+ LAAA+REL+EE+G   S W  LGRY +    G  +  L+
Sbjct:   56 RFVLFRQEKYAVEGLS--LAPVGGYLEPGEDPLAAAQRELREESGYTASDWEHLGRYAVDGNRGAGVAHLY 124          
BLAST of NO21G00100 vs. NCBI_GenBank
Match: WP_028459356.1 (NUDIX hydrolase [Chloroflexus sp. Y-396-1])

HSP 1 Score: 67.0 bits (162), Expect = 3.300e-8
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 0
Query:   17 KFLVFEQRKYGYERSSPNLAPIGGLVELGEETLAAAKRELQEEAGLVLSSWTPLGRYRISFTHGGFLERLF 88
            +F++F Q KY  E  S  LAP+GG +E GE+ L AA+RELQEE+G V + W  LG Y +    G  +  LF
Sbjct:   56 RFVLFRQEKYAVEGFS--LAPVGGYLEPGEDPLVAAQRELQEESGYVATEWEALGAYAVDGNRGAGVAHLF 124          
BLAST of NO21G00100 vs. NCBI_GenBank
Match: PMP83897.1 (NUDIX hydrolase [Chloroflexus aggregans])

HSP 1 Score: 67.0 bits (162), Expect = 3.300e-8
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 0
Query:   17 KFLVFEQRKYGYERSSPNLAPIGGLVELGEETLAAAKRELQEEAGLVLSSWTPLGRYRISFTHGGFLERLF 88
            +F++F Q KY  E  S  LAP+GG +E GE+ L AA+REL+EE+G + S W  LGRY +    G  +  L+
Sbjct:   56 RFVLFRQEKYAVEGLS--LAPVGGYLEPGEDPLGAAQRELREESGYIASDWEHLGRYAVDGNRGAGVAHLY 124          
BLAST of NO21G00100 vs. NCBI_GenBank
Match: OGR29205.1 (NUDIX hydrolase [Desulfobacca sp. RBG_16_60_12])

HSP 1 Score: 65.9 bits (159), Expect = 7.500e-8
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 0
Query:   14 EAGKFLVFEQRKYGYERSSPNLAPIGGLVELGEETLAAAKRELQEEAGLVLSSWTPLGRYRISFTHGGFLERLF 88
            E G+FL F Q KY  E +S  LAP+GG ++ GE+ L+AA+REL EE G   + W  LGR+ +    G     LF
Sbjct:   53 EDGEFLCFRQTKYAVEGTS--LAPVGGYLDAGEDPLSAARRELLEETGCQAAEWVDLGRFPVDGNRGAGTAHLF 124          
BLAST of NO21G00100 vs. NCBI_GenBank
Match: WP_066791717.1 (NUDIX hydrolase [Chloroflexus islandicus] >OAN36354.1 NUDIX hydrolase [Chloroflexus islandicus])

HSP 1 Score: 65.5 bits (158), Expect = 9.700e-8
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 0
Query:   17 KFLVFEQRKYGYERSSPNLAPIGGLVELGEETLAAAKRELQEEAGLVLSSWTPLGRYRISFTHGGFLERLF 88
            +F++F Q KY  E  S  LAP+GG +E GE+ L AA+REL+EE+G   S W  LGRY +    G  +  L+
Sbjct:   56 RFVLFRQEKYAVEGLS--LAPVGGYLEPGEDPLLAAQRELREESGYAASEWEHLGRYTVDGNRGAGVAHLY 124          
BLAST of NO21G00100 vs. NCBI_GenBank
Match: XP_005855613.1 (nudix hydrolase [Nannochloropsis gaditana CCMP526] >EKU20744.1 nudix hydrolase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 65.1 bits (157), Expect = 1.300e-7
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 0
Query:    5 GGGQGGEEGEAG-KFLVFEQRKYGYERSSPNLAPIGGLVELGEETLAAAKRELQEEAGL 63
            G G+G   GE   +FLVFEQ+KYGY+  S  LAPIGGLVE GE+ L AAKREL EEAGL
Sbjct:  119 GAGEGMTGGEEDRRFLVFEQKKYGYQGLS--LAPIGGLVEPGEDALMAAKRELLEEAGL 175          
BLAST of NO21G00100 vs. NCBI_GenBank
Match: OPX22740.1 (NUDIX hydrolase [Candidatus Latescibacteria bacterium 4484_107])

HSP 1 Score: 65.1 bits (157), Expect = 1.300e-7
Identity = 35/74 (47.30%), Postives = 43/74 (58.11%), Query Frame = 0
Query:   14 EAGKFLVFEQRKYGYERSSPNLAPIGGLVELGEETLAAAKRELQEEAGLVLSSWTPLGRYRISFTHGGFLERLF 88
            E  +FL F Q KYG E +S  LAP+GG +E  E+ L AAKREL EE G   S W  LG YR+    G  +  L+
Sbjct:   53 ERDEFLCFRQVKYGVEGAS--LAPVGGYIEPDEDPLDAAKRELMEETGYEASDWIDLGSYRVCGNRGFAMAYLY 124          
BLAST of NO21G00100 vs. NCBI_GenBank
Match: WP_062193964.1 (NUDIX hydrolase [Anaerolinea thermolimosa] >GAP07555.1 ADP-ribose pyrophosphatase [Anaerolinea thermolimosa])

HSP 1 Score: 63.2 bits (152), Expect = 4.800e-7
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 0
Query:   16 GKFLVFEQRKYGYERSSPNLAPIGGLVELGEETLAAAKRELQEEAGLVLSSWTPLGRYRISFTHG 81
            G++LVF Q KYG E  S  LAP+GG +E GE+ LAAA+REL EE G     W  LG + +    G
Sbjct:   55 GRYLVFRQGKYGLEGDS--LAPVGGYLEPGEDPLAAAQRELLEETGYTARQWHHLGHFLVDPNRG 117          
The following BLAST results are available for this feature:
BLAST of NO21G00100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
WP_031460144.18.800e-947.89NUDIX hydrolase [Chloroflexus sp. MS-G][more]
WP_012258952.12.000e-847.89MULTISPECIES: NUDIX hydrolase [Chloroflexus] >YP_0... [more]
WP_015942426.12.600e-846.48NUDIX hydrolase [Chloroflexus aggregans] >ACL26581... [more]
WP_028459356.13.300e-846.48NUDIX hydrolase [Chloroflexus sp. Y-396-1][more]
PMP83897.13.300e-845.07NUDIX hydrolase [Chloroflexus aggregans][more]
OGR29205.17.500e-844.59NUDIX hydrolase [Desulfobacca sp. RBG_16_60_12][more]
WP_066791717.19.700e-845.07NUDIX hydrolase [Chloroflexus islandicus] >OAN3635... [more]
XP_005855613.11.300e-766.10nudix hydrolase [Nannochloropsis gaditana CCMP526]... [more]
OPX22740.11.300e-747.30NUDIX hydrolase [Candidatus Latescibacteria bacter... [more]
WP_062193964.14.800e-749.23NUDIX hydrolase [Anaerolinea thermolimosa] >GAP075... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR093ncniR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR100ngnoR100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007566NSK007566Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00100.1NO21G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00100.1NO21G00100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00100 ID=NO21G00100|Name=NO21G00100|organism=Nannochloropsis oceanica|type=gene|length=589bp
ATGGAGGAGCGGGGCGGGGGGCAGGGAGGGGAGGAGGGGGAGGCAGGAAA
GTTTCTGGTATTCGAGCAGAGAAAGTATGGATATGAGAGGTCGAGgtatg
aagggagggaggataggaggggagaatggagatatcatgaagcgtctata
gccttgatgtgttgcctcctttcatctttcttcactcataacccttcttc
cctccctccctccctcctcttttcgtcaagCCCCAATCTGGCTCCCATTG
GAGGACTCGTCGAGCTCGGCGAAGAAACTCTTGCTGCCGCCAAGCGCGAA
CTCCAGGAGGAGGCAGGTCTAGgtgcgtcccctcccttccttccttcttc
ccatcctctctctaaccctttcctatcatttctttgctctccgccctctt
gctgctcgtctcttgtcccgcctggaccctctctttttttcatttacgat
cgtaatccttcagctgtaccttcttctcccttccttcattcttccctccc
tctctccagTCTTGTCCTCCTGGACCCCCCTCGGCCGGTACCGCATTTCG
TTTACCCACGGCGGGTTTCTTGAACGTCTTTTTCGCTGA
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protein sequence of NO21G00100.1

>NO21G00100.1-protein ID=NO21G00100.1-protein|Name=NO21G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MEERGGGQGGEEGEAGKFLVFEQRKYGYERSSPNLAPIGGLVELGEETLA
AAKRELQEEAGLVLSSWTPLGRYRISFTHGGFLERLFR*
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Synonyms
Publications