NO21G00100.1, NO21G00100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00100.1
Unique NameNO21G00100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length267
Alignment locationchr21:28404..28992 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:28404..28992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G00100.1 vs.
Match: WP_031460144.1 (NUDIX hydrolase [Chloroflexus sp. MS-G])

HSP 1 Score: 68.9 bits (167), Expect = 8.800e-9
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 0 
Query:   17 KFLVFEQRKYGYERSSPNLAPIGGLVELGEETLAAAKRELQEEAGLVLSSWTPLGRYRISFTHGGFLERLF 88
            +F++F Q KY  E  S  LAP+GG +E GE+ L AA+RELQEE+G V + W  LGRY +    G  +  LF
Sbjct:   56 QFVLFRQEKYAVEGLS--LAPVGGYLEPGEDPLQAAQRELQEESGYVATEWEALGRYAVDGNRGAGIAHLF 124
The following BLAST results are available for this feature:
BLAST of NO21G00100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_031460144.18.800e-947.89NUDIX hydrolase [Chloroflexus sp. MS-G][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00100NO21G00100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00100.1NO21G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00100.1.cds1NO21G00100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00100.1.cds2NO21G00100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00100.1.cds3NO21G00100.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00100.1 ID=NO21G00100.1|Name=NO21G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=267bp
ATGGAGGAGCGGGGCGGGGGGCAGGGAGGGGAGGAGGGGGAGGCAGGAAA
GTTTCTGGTATTCGAGCAGAGAAAGTATGGATATGAGAGGTCGAGCCCCA
ATCTGGCTCCCATTGGAGGACTCGTCGAGCTCGGCGAAGAAACTCTTGCT
GCCGCCAAGCGCGAACTCCAGGAGGAGGCAGGTCTAGTCTTGTCCTCCTG
GACCCCCCTCGGCCGGTACCGCATTTCGTTTACCCACGGCGGGTTTCTTG
AACGTCTTTTTCGCTGA
back to top

protein sequence of NO21G00100.1

>NO21G00100.1-protein ID=NO21G00100.1-protein|Name=NO21G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MEERGGGQGGEEGEAGKFLVFEQRKYGYERSSPNLAPIGGLVELGEETLA
AAKRELQEEAGLVLSSWTPLGRYRISFTHGGFLERLFR*
back to top

mRNA from alignment at chr21:28404..28992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00100.1 ID=NO21G00100.1|Name=NO21G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=589bp|location=Sequence derived from alignment at chr21:28404..28992+ (Nannochloropsis oceanica)
ATGGAGGAGCGGGGCGGGGGGCAGGGAGGGGAGGAGGGGGAGGCAGGAAA
GTTTCTGGTATTCGAGCAGAGAAAGTATGGATATGAGAGGTCGAGGTATG
AAGGGAGGGAGGATAGGAGGGGAGAATGGAGATATCATGAAGCGTCTATA
GCCTTGATGTGTTGCCTCCTTTCATCTTTCTTCACTCATAACCCTTCTTC
CCTCCCTCCCTCCCTCCTCTTTTCGTCAAGCCCCAATCTGGCTCCCATTG
GAGGACTCGTCGAGCTCGGCGAAGAAACTCTTGCTGCCGCCAAGCGCGAA
CTCCAGGAGGAGGCAGGTCTAGGTGCGTCCCCTCCCTTCCTTCCTTCTTC
CCATCCTCTCTCTAACCCTTTCCTATCATTTCTTTGCTCTCCGCCCTCTT
GCTGCTCGTCTCTTGTCCCGCCTGGACCCTCTCTTTTTTTCATTTACGAT
CGTAATCCTTCAGCTGTACCTTCTTCTCCCTTCCTTCATTCTTCCCTCCC
TCTCTCCAGTCTTGTCCTCCTGGACCCCCCTCGGCCGGTACCGCATTTCG
TTTACCCACGGCGGGTTTCTTGAACGTCTTTTTCGCTGA
back to top

Coding sequence (CDS) from alignment at chr21:28404..28992+

>NO21G00100.1 ID=NO21G00100.1|Name=NO21G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at chr21:28404..28992+ (Nannochloropsis oceanica)
ATGGAGGAGCGGGGCGGGGGGCAGGGAGGGGAGGAGGGGGAGGCAGGAAA
GTTTCTGGTATTCGAGCAGAGAAAGTATGGATATGAGAGGTCGAGCCCCA
ATCTGGCTCCCATTGGAGGACTCGTCGAGCTCGGCGAAGAAACTCTTGCT
GCCGCCAAGCGCGAACTCCAGGAGGAGGCAGGTCTAGTCTTGTCCTCCTG
GACCCCCCTCGGCCGGTACCGCATTTCGTTTACCCACGGCGGGTTTCTTG
AACGTCTTTTTCGCTGA
back to top
Synonyms
Publications