NO21G00010, NO21G00010 (gene) Nannochloropsis oceanica

Overview
NameNO21G00010
Unique NameNO21G00010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2052
Alignment locationchr21:225..2276 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:225..2276 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO21G00010 vs. NCBI_GenBank
Match: EWM20656.1 (hypothetical protein Naga_100172g13, partial [Nannochloropsis gaditana])

HSP 1 Score: 130.6 bits (327), Expect = 1.300e-26
Identity = 78/126 (61.90%), Postives = 84/126 (66.67%), Query Frame = 0 
Query:  180 HHQRGDLAVEFPPSFSSPSTDHQPSSDPHVRVPEELLSTQCMASTSSLEGEGASVHSLDPAPSLLSFADSLATDLTAANDPFGLDGGGGREGGRDGVGFLGPGLGRSHNSAGEERRSGVKRMGGWD 306
            H    DLA++ PPSF +            +RVPEELLST CMASTSSLEG GASV SLDPAPS+LSF DSLATDLTAANDPFGLD      GGRDGVGFLGPGLGRS    G     G     GW+
Sbjct:  155 HVSDPDLALDIPPSFPA-----------DIRVPEELLSTHCMASTSSLEG-GASVRSLDPAPSILSFGDSLATDLTAANDPFGLD------GGRDGVGFLGPGLGRSDGEGGGAEGGGWAGRPGWE 262
The following BLAST results are available for this feature:
BLAST of NO21G00010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400160018002000SequenceEWM20656.1
Match NameE-valueIdentityDescription
EWM20656.11.300e-2661.90hypothetical protein Naga_100172g13, partial [Nann... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR093ncniR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR100ngnoR100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007575NSK007575Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00010.1NO21G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613109gene_11044Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100172g13gene9749Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00010.1NO21G00010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00010 ID=NO21G00010|Name=NO21G00010|organism=Nannochloropsis oceanica|type=gene|length=2052bp
ATGGCAAGTCACGGGGATGACAAGGGACCTTCTTCCCCTCCACCCTCCTT
TGAGCTCACCCCGACTCCAAGCAGCGCCCCCAGCACGAGTAGCACAAACC
CGAGCACGACCGGCGCCGCAGCGCAGCGGCGACAAGCGCGGGGACTGTCC
CCCCTGCCAATGCCACCACCGGTACAACCACTACCATCAACCAGGTCCTC
CTCATGCAAGGATGATGTGGAGGGCCAGGTTAAAGGGGAGGAAACCAAGG
AGAGCCCTGATACAGGCGGAAGCAGCACCGGCCTTCCCCCGGGCAGCAGC
ACCACCACGGGAAGCAAGGGCAGTCGTGTACGTGCTGATCCAGCTGTTCC
TTCTAATCCCCCTCCTACAAGAACTGCCTCCGCTCCTCCTCGCGCCGCTT
CTTCCACCTCCTCATCCTCCTCCTCAACCTCCACTCCGTTCATGTTCCTC
CCCGCCCCCACTTCGTCTCTTTCCTCCTCTACCTCGTCCATGGGCACGAT
CGGCATTAACGCCAACCTCATGACCCTCCCAGAGCAGCACCACCAACGTG
GCGACCTGGCCGTGGAATTCCCCCCCTCCTTTTCCTCCCCCTCCACTGAC
CACCAGCCCTCCTCTGACCCTCACGTTCGAGTGCCCGAAGAGCTCCTCTC
CACGCAGTGCATGGCCTCTACCTCCTCCCTAGAAGGCGAGGGGGCGTCCG
TCCACTCCCTCGACCCCGCACCATCCCTCCTCTCCTTCGCTGACTCGCTA
GCCACAGACCTGACAGCTGCCAATGACCCTTTTGGGTTGGATGGAGGGGG
AGGGAGGGAGGGAGGGAGGGACGGGGTAGGCTTTCTGGGACCCGGCTTGG
GGAGATCGCATAATTCGGCGGGCGAGGAGAGGAGGAGTGGGGTGAAGAGG
ATGGGGGGGTGGGATGGGGGGAGGGATGGGGGGGGAAGGGATGGAGGAGG
GTGGGGTGAAGCCGGTGTGAGAGGAGGGAGAGAAAGGGGTGGCTGGGGGA
GGAATTTTTCTTGGCTGGGAATGCGTTCCTCTTCGTCGTCGTACCTGCAC
GCGGGCGGGCCAAGTGTCAAAACGCGGACGAAGACGAGGGGCCAGCGTTT
GGTGGAGgtgagaacggagggaaggggggcacgaaatgaaacagaggaga
gtttggggaggaaggaggaagggagacagggggagacgggtggaaagctt
ttatctcctctttaccttcctgatagcccttttgcatcattggtgcactt
atgatatcgtcgttcactcatccgcctcgctcccctccttcgagcccctt
agtgattcccaaatggcctcctcttcttggtcacctgccccctctttcct
acctctcgtctagtcatcaactcaaccctcttttccactcgctccactct
caaactaatttagATCATGGTCCTCCTTATCCTCCTCGTCCTCGTCCTCG
GCCTGACCATCTGGCTTAGCACTCGACCCAGACCCCAAGGAGCCGGCGCT
CCCTCCGAGGAGAGCCCCTTCTTTCCGTCTCCCCCTTCCTCCCCCCCGCC
ATCCTCTGACGCCGAGAGTGGGCCTCCTATTCCTGGGGCGTCAGCAGGAG
ACGAAGAGCCTTTCCCTCCTGCTCCTATGCCACCTCCGCTTCCCGAGCCA
CCGGCTGGAGGGGGGCCGCGGCGTCTCGGCCTACTGCGATTCCGATATCA
TCTGTGAGCATCCAAAAGAGGTTATCCACAGCACCTGTATTAGCACGACG
ATCAATTGCCCCAAAAACCGCTATATAAGGAGGCGAAGTAGCAAATGAAA
AGAGAGAAAGAAGAAAGAGGGGGCTCATATACGGGAGGGGGCGGGTATAC
GAGATCGAGGTCGATTGAGAAGCAAGTAGATGTAGATAGCACAGAGGATC
GACACCACTCCCATTTTGTCCTATAAACTAGCCAGGGAAGAAACCAACAA
AATTAGGGGTCTACAGAGGCTTGCAATAATTTGACAACAATCCAAAATAA
TTTTGCACCGGTTCTTCTCCGTATGCTCTGAGTGCTTCCATTTTCTTTTC
TT
back to top

protein sequence of NO21G00010.1

>NO21G00010.1-protein ID=NO21G00010.1-protein|Name=NO21G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MASHGDDKGPSSPPPSFELTPTPSSAPSTSSTNPSTTGAAAQRRQARGLS
PLPMPPPVQPLPSTRSSSCKDDVEGQVKGEETKESPDTGGSSTGLPPGSS
TTTGSKGSRVRADPAVPSNPPPTRTASAPPRAASSTSSSSSSTSTPFMFL
PAPTSSLSSSTSSMGTIGINANLMTLPEQHHQRGDLAVEFPPSFSSPSTD
HQPSSDPHVRVPEELLSTQCMASTSSLEGEGASVHSLDPAPSLLSFADSL
ATDLTAANDPFGLDGGGGREGGRDGVGFLGPGLGRSHNSAGEERRSGVKR
MGGWDGGRDGGGRDGGGWGEAGVRGGRERGGWGRNFSWLGMRSSSSSYLH
AGGPSVKTRTKTRGQRLVEIMVLLILLVLVLGLTIWLSTRPRPQGAGAPS
EESPFFPSPPSSPPPSSDAESGPPIPGASAGDEEPFPPAPMPPPLPEPPA
GGGPRRLGLLRFRYHL*
back to top
Synonyms
Publications