NO21G00010.1, NO21G00010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00010.1
Unique NameNO21G00010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1746
Alignment locationchr21:225..2276 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:225..2276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00010.1 vs.
Match: EWM20656.1 (hypothetical protein Naga_100172g13, partial [Nannochloropsis gaditana])

HSP 1 Score: 119.8 bits (299), Expect = 2.300e-23
Identity = 139/332 (41.87%), Postives = 166/332 (50.00%), Query Frame = 0 
Query:    8 KGPSSPPPSFELTPTPSS--APSTSSTNPSTTGAAAQRRQARGLSPLPMPPPVQPLPSTRSSS------CKDDVEGQVKGEETKESPDTGGSSTGLPPGSSTTTGSKGS-RVRADPAVPSNPPPTRTASAPPRAASSTSSSSSSTSTPFMFLPAPTSSLSSSTSSMGTIGINANLMTLPEQHHQRGDLAVEFPPSFSSPSTDHQPSSDPHVRVPEELLSTQCMASTSSLEGEGASVHSLDPAPSLLSFADSLATDLTAANDPFGLDGGGGREGGRDGVGFLGPGLGRSHNSAGEERRSGVKRMGGWDGGRDGGGRDGGGW-GEAGVRGGRER 330
            +GPS P PSFEL  T +S  + STSS++ + TG          +S +  P   QP P  + S+          V G   G E  E  +   +    P  +++TTGS  S  V     + ++ P  R A A  RA S +     + S PF        SLSSS               LP  H    DLA++ PPSF +            +RVPEELLST CMASTSSLEG GASV SLDPAPS+LSF DSLATDLTAANDPFGLD      GGRDGVGFLGPGLGRS                  DG  +GGG +GGGW G  G     ER
Sbjct:    7 RGPS-PRPSFELGTTTNSTVSSSTSSSSSANTG---------DISTIKRPSTAQPWPGRQGSTPRSRTPAASGVPGTGGGGEKDEEANDPLTHESAPTSTTSTTGSNTSYPVGGSSFLNASKPAGRPACAASRAPSPSPKPYIAGSVPFF-------SLSSS--------------ALP--HVSDPDLALDIPPSFPA-----------DIRVPEELLSTHCMASTSSLEG-GASVRSLDPAPSILSFGDSLATDLTAANDPFGLD------GGRDGVGFLGPGLGRS------------------DG--EGGGAEGGGWAGRPGWEAEIER 267
The following BLAST results are available for this feature:
BLAST of NO21G00010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600Expect = 2.30e-23 / Id = 41.87SequenceEWM20656.1
Match NameE-valueIdentityDescription
EWM20656.12.300e-2341.87hypothetical protein Naga_100172g13, partial [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00010NO21G00010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00010.1NO21G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00010.1.cds1NO21G00010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00010.1.cds2NO21G00010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00010.1 ID=NO21G00010.1|Name=NO21G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1746bp
ATGGCAAGTCACGGGGATGACAAGGGACCTTCTTCCCCTCCACCCTCCTT
TGAGCTCACCCCGACTCCAAGCAGCGCCCCCAGCACGAGTAGCACAAACC
CGAGCACGACCGGCGCCGCAGCGCAGCGGCGACAAGCGCGGGGACTGTCC
CCCCTGCCAATGCCACCACCGGTACAACCACTACCATCAACCAGGTCCTC
CTCATGCAAGGATGATGTGGAGGGCCAGGTTAAAGGGGAGGAAACCAAGG
AGAGCCCTGATACAGGCGGAAGCAGCACCGGCCTTCCCCCGGGCAGCAGC
ACCACCACGGGAAGCAAGGGCAGTCGTGTACGTGCTGATCCAGCTGTTCC
TTCTAATCCCCCTCCTACAAGAACTGCCTCCGCTCCTCCTCGCGCCGCTT
CTTCCACCTCCTCATCCTCCTCCTCAACCTCCACTCCGTTCATGTTCCTC
CCCGCCCCCACTTCGTCTCTTTCCTCCTCTACCTCGTCCATGGGCACGAT
CGGCATTAACGCCAACCTCATGACCCTCCCAGAGCAGCACCACCAACGTG
GCGACCTGGCCGTGGAATTCCCCCCCTCCTTTTCCTCCCCCTCCACTGAC
CACCAGCCCTCCTCTGACCCTCACGTTCGAGTGCCCGAAGAGCTCCTCTC
CACGCAGTGCATGGCCTCTACCTCCTCCCTAGAAGGCGAGGGGGCGTCCG
TCCACTCCCTCGACCCCGCACCATCCCTCCTCTCCTTCGCTGACTCGCTA
GCCACAGACCTGACAGCTGCCAATGACCCTTTTGGGTTGGATGGAGGGGG
AGGGAGGGAGGGAGGGAGGGACGGGGTAGGCTTTCTGGGACCCGGCTTGG
GGAGATCGCATAATTCGGCGGGCGAGGAGAGGAGGAGTGGGGTGAAGAGG
ATGGGGGGGTGGGATGGGGGGAGGGATGGGGGGGGAAGGGATGGAGGAGG
GTGGGGTGAAGCCGGTGTGAGAGGAGGGAGAGAAAGGGGTGGCTGGGGGA
GGAATTTTTCTTGGCTGGGAATGCGTTCCTCTTCGTCGTCGTACCTGCAC
GCGGGCGGGCCAAGTGTCAAAACGCGGACGAAGACGAGGGGCCAGCGTTT
GGTGGAGATCATGGTCCTCCTTATCCTCCTCGTCCTCGTCCTCGGCCTGA
CCATCTGGCTTAGCACTCGACCCAGACCCCAAGGAGCCGGCGCTCCCTCC
GAGGAGAGCCCCTTCTTTCCGTCTCCCCCTTCCTCCCCCCCGCCATCCTC
TGACGCCGAGAGTGGGCCTCCTATTCCTGGGGCGTCAGCAGGAGACGAAG
AGCCTTTCCCTCCTGCTCCTATGCCACCTCCGCTTCCCGAGCCACCGGCT
GGAGGGGGGCCGCGGCGTCTCGGCCTACTGCGATTCCGATATCATCTGTG
AGCATCCAAAAGAGGTTATCCACAGCACCTGTATTAGCACGACGATCAAT
TGCCCCAAAAACCGCTATATAAGGAGGCGAAGTAGCAAATGAAAAGAGAG
AAAGAAGAAAGAGGGGGCTCATATACGGGAGGGGGCGGGTATACGAGATC
GAGGTCGATTGAGAAGCAAGTAGATGTAGATAGCACAGAGGATCGACACC
ACTCCCATTTTGTCCTATAAACTAGCCAGGGAAGAAACCAACAAAATTAG
GGGTCTACAGAGGCTTGCAATAATTTGACAACAATCCAAAATAATTTTGC
ACCGGTTCTTCTCCGTATGCTCTGAGTGCTTCCATTTTCTTTTCTT
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protein sequence of NO21G00010.1

>NO21G00010.1-protein ID=NO21G00010.1-protein|Name=NO21G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MASHGDDKGPSSPPPSFELTPTPSSAPSTSSTNPSTTGAAAQRRQARGLS
PLPMPPPVQPLPSTRSSSCKDDVEGQVKGEETKESPDTGGSSTGLPPGSS
TTTGSKGSRVRADPAVPSNPPPTRTASAPPRAASSTSSSSSSTSTPFMFL
PAPTSSLSSSTSSMGTIGINANLMTLPEQHHQRGDLAVEFPPSFSSPSTD
HQPSSDPHVRVPEELLSTQCMASTSSLEGEGASVHSLDPAPSLLSFADSL
ATDLTAANDPFGLDGGGGREGGRDGVGFLGPGLGRSHNSAGEERRSGVKR
MGGWDGGRDGGGRDGGGWGEAGVRGGRERGGWGRNFSWLGMRSSSSSYLH
AGGPSVKTRTKTRGQRLVEIMVLLILLVLVLGLTIWLSTRPRPQGAGAPS
EESPFFPSPPSSPPPSSDAESGPPIPGASAGDEEPFPPAPMPPPLPEPPA
GGGPRRLGLLRFRYHL*
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mRNA from alignment at chr21:225..2276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00010.1 ID=NO21G00010.1|Name=NO21G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp|location=Sequence derived from alignment at chr21:225..2276- (Nannochloropsis oceanica)
ATGGCAAGTCACGGGGATGACAAGGGACCTTCTTCCCCTCCACCCTCCTT
TGAGCTCACCCCGACTCCAAGCAGCGCCCCCAGCACGAGTAGCACAAACC
CGAGCACGACCGGCGCCGCAGCGCAGCGGCGACAAGCGCGGGGACTGTCC
CCCCTGCCAATGCCACCACCGGTACAACCACTACCATCAACCAGGTCCTC
CTCATGCAAGGATGATGTGGAGGGCCAGGTTAAAGGGGAGGAAACCAAGG
AGAGCCCTGATACAGGCGGAAGCAGCACCGGCCTTCCCCCGGGCAGCAGC
ACCACCACGGGAAGCAAGGGCAGTCGTGTACGTGCTGATCCAGCTGTTCC
TTCTAATCCCCCTCCTACAAGAACTGCCTCCGCTCCTCCTCGCGCCGCTT
CTTCCACCTCCTCATCCTCCTCCTCAACCTCCACTCCGTTCATGTTCCTC
CCCGCCCCCACTTCGTCTCTTTCCTCCTCTACCTCGTCCATGGGCACGAT
CGGCATTAACGCCAACCTCATGACCCTCCCAGAGCAGCACCACCAACGTG
GCGACCTGGCCGTGGAATTCCCCCCCTCCTTTTCCTCCCCCTCCACTGAC
CACCAGCCCTCCTCTGACCCTCACGTTCGAGTGCCCGAAGAGCTCCTCTC
CACGCAGTGCATGGCCTCTACCTCCTCCCTAGAAGGCGAGGGGGCGTCCG
TCCACTCCCTCGACCCCGCACCATCCCTCCTCTCCTTCGCTGACTCGCTA
GCCACAGACCTGACAGCTGCCAATGACCCTTTTGGGTTGGATGGAGGGGG
AGGGAGGGAGGGAGGGAGGGACGGGGTAGGCTTTCTGGGACCCGGCTTGG
GGAGATCGCATAATTCGGCGGGCGAGGAGAGGAGGAGTGGGGTGAAGAGG
ATGGGGGGGTGGGATGGGGGGAGGGATGGGGGGGGAAGGGATGGAGGAGG
GTGGGGTGAAGCCGGTGTGAGAGGAGGGAGAGAAAGGGGTGGCTGGGGGA
GGAATTTTTCTTGGCTGGGAATGCGTTCCTCTTCGTCGTCGTACCTGCAC
GCGGGCGGGCCAAGTGTCAAAACGCGGACGAAGACGAGGGGCCAGCGTTT
GGTGGAGGTGAGAACGGAGGGAAGGGGGGCACGAAATGAAACAGAGGAGA
GTTTGGGGAGGAAGGAGGAAGGGAGACAGGGGGAGACGGGTGGAAAGCTT
TTATCTCCTCTTTACCTTCCTGATAGCCCTTTTGCATCATTGGTGCACTT
ATGATATCGTCGTTCACTCATCCGCCTCGCTCCCCTCCTTCGAGCCCCTT
AGTGATTCCCAAATGGCCTCCTCTTCTTGGTCACCTGCCCCCTCTTTCCT
ACCTCTCGTCTAGTCATCAACTCAACCCTCTTTTCCACTCGCTCCACTCT
CAAACTAATTTAGATCATGGTCCTCCTTATCCTCCTCGTCCTCGTCCTCG
GCCTGACCATCTGGCTTAGCACTCGACCCAGACCCCAAGGAGCCGGCGCT
CCCTCCGAGGAGAGCCCCTTCTTTCCGTCTCCCCCTTCCTCCCCCCCGCC
ATCCTCTGACGCCGAGAGTGGGCCTCCTATTCCTGGGGCGTCAGCAGGAG
ACGAAGAGCCTTTCCCTCCTGCTCCTATGCCACCTCCGCTTCCCGAGCCA
CCGGCTGGAGGGGGGCCGCGGCGTCTCGGCCTACTGCGATTCCGATATCA
TCTGTGAGCATCCAAAAGAGGTTATCCACAGCACCTGTATTAGCACGACG
ATCAATTGCCCCAAAAACCGCTATATAAGGAGGCGAAGTAGCAAATGAAA
AGAGAGAAAGAAGAAAGAGGGGGCTCATATACGGGAGGGGGCGGGTATAC
GAGATCGAGGTCGATTGAGAAGCAAGTAGATGTAGATAGCACAGAGGATC
GACACCACTCCCATTTTGTCCTATAAACTAGCCAGGGAAGAAACCAACAA
AATTAGGGGTCTACAGAGGCTTGCAATAATTTGACAACAATCCAAAATAA
TTTTGCACCGGTTCTTCTCCGTATGCTCTGAGTGCTTCCATTTTCTTTTC
TT
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Coding sequence (CDS) from alignment at chr21:225..2276-

>NO21G00010.1 ID=NO21G00010.1|Name=NO21G00010.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr21:225..2276- (Nannochloropsis oceanica)
ATGGCAAGTCACGGGGATGACAAGGGACCTTCTTCCCCTCCACCCTCCTT
TGAGCTCACCCCGACTCCAAGCAGCGCCCCCAGCACGAGTAGCACAAACC
CGAGCACGACCGGCGCCGCAGCGCAGCGGCGACAAGCGCGGGGACTGTCC
CCCCTGCCAATGCCACCACCGGTACAACCACTACCATCAACCAGGTCCTC
CTCATGCAAGGATGATGTGGAGGGCCAGGTTAAAGGGGAGGAAACCAAGG
AGAGCCCTGATACAGGCGGAAGCAGCACCGGCCTTCCCCCGGGCAGCAGC
ACCACCACGGGAAGCAAGGGCAGTCGTGTACGTGCTGATCCAGCTGTTCC
TTCTAATCCCCCTCCTACAAGAACTGCCTCCGCTCCTCCTCGCGCCGCTT
CTTCCACCTCCTCATCCTCCTCCTCAACCTCCACTCCGTTCATGTTCCTC
CCCGCCCCCACTTCGTCTCTTTCCTCCTCTACCTCGTCCATGGGCACGAT
CGGCATTAACGCCAACCTCATGACCCTCCCAGAGCAGCACCACCAACGTG
GCGACCTGGCCGTGGAATTCCCCCCCTCCTTTTCCTCCCCCTCCACTGAC
CACCAGCCCTCCTCTGACCCTCACGTTCGAGTGCCCGAAGAGCTCCTCTC
CACGCAGTGCATGGCCTCTACCTCCTCCCTAGAAGGCGAGGGGGCGTCCG
TCCACTCCCTCGACCCCGCACCATCCCTCCTCTCCTTCGCTGACTCGCTA
GCCACAGACCTGACAGCTGCCAATGACCCTTTTGGGTTGGATGGAGGGGG
AGGGAGGGAGGGAGGGAGGGACGGGGTAGGCTTTCTGGGACCCGGCTTGG
GGAGATCGCATAATTCGGCGGGCGAGGAGAGGAGGAGTGGGGTGAAGAGG
ATGGGGGGGTGGGATGGGGGGAGGGATGGGGGGGGAAGGGATGGAGGAGG
GTGGGGTGAAGCCGGTGTGAGAGGAGGGAGAGAAAGGGGTGGCTGGGGGA
GGAATTTTTCTTGGCTGGGAATGCGTTCCTCTTCGTCGTCGTACCTGCAC
GCGGGCGGGCCAAGTGTCAAAACGCGGACGAAGACGAGGGGCCAGCGTTT
GGTGGAGATCATGGTCCTCCTTATCCTCCTCGTCCTCGTCCTCGGCCTGA
CCATCTGGCTTAGCACTCGACCCAGACCCCAAGGAGCCGGCGCTCCCTCC
GAGGAGAGCCCCTTCTTTCCGTCTCCCCCTTCCTCCCCCCCGCCATCCTC
TGACGCCGAGAGTGGGCCTCCTATTCCTGGGGCGTCAGCAGGAGACGAAG
AGCCTTTCCCTCCTGCTCCTATGCCACCTCCGCTTCCCGAGCCACCGGCT
GGAGGGGGGCCGCGGCGTCTCGGCCTACTGCGATTCCGATATCATCTGTG
A
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Synonyms
Publications