NO20G02580, NO20G02580 (gene) Nannochloropsis oceanica

Overview
NameNO20G02580
Unique NameNO20G02580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3362
Alignment locationchr20:817863..821224 -

Link to JBrowse

Properties
Property NameValue
DescriptionSulfate Permease (SulP) Family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:817863..821224 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005789endoplasmic reticulum membrane
GO:0016021integral component of membrane
GO:0016020membrane
GO:0005789endoplasmic reticulum membrane
Vocabulary: INTERPRO
TermDefinition
IPR008962PapD-like_sf
IPR016763VAP
IPR000535MSP_dom
Homology
[Close]
BLAST of NO20G02580 vs. NCBI_GenBank
Match: OWZ24273.1 (hypothetical protein PHMEG_000690 [Phytophthora megakarya])

HSP 1 Score: 79.3 bits (194), Expect = 1.900e-11
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 0 
Query:   64 EPADRIAIDLASNETARTIIHVQNIS-SQPVAFKVKTTQPKRYLVKPNQGILEAGGSDRIQIQIVPKD-RALLATKPG--QAASDRFLVQAVACEPRLTKL--ERESEDFLKELAALWSTLDKQA 183
            EPAD +A  L      + ++ ++N++  + +AFKVKTT+P RYLV+PNQG+L   GS  I + +  KD   LL   P   Q A+D+FLVQ++  +    +L   + +++   EL  +W+  DK+A
Sbjct:   19 EPADSLAFHLQPQTAPQAVLTIRNVADDRQIAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQLANDKFLVQSIYVDDSFYELVKTKSTKEMADELTNMWARTDKRA 143
[Close]
BLAST of NO20G02580 vs. NCBI_GenBank
Match: XP_008897152.1 (hypothetical protein PPTG_05368 [Phytophthora parasitica INRA-310] >ETI34192.1 hypothetical protein F443_19264 [Phytophthora parasitica P1569] >ETK74561.1 hypothetical protein L915_18689 [Phytophthora parasitica] >ETL27982.1 hypothetical protein L916_18594 [Phytophthora parasitica] >ETL81229.1 hypothetical protein L917_18417 [Phytophthora parasitica] >ETM34431.1 hypothetical protein L914_18504 [Phytophthora parasitica] >ETN17607.1 hypothetical protein PPTG_05368 [Phytophthora parasitica INRA-310] >ETO63077.1 hypothetical protein F444_19218 [Phytophthora parasitica P1976] >ETP04099.1 hypothetical protein F441_19079 [Phytophthora parasitica CJ01A1] >KUF83781.1 Vesicle-associated membrane protein/synaptobrevin-binding protein [Phytophthora nicotianae])

HSP 1 Score: 78.2 bits (191), Expect = 4.200e-11
Identity = 45/125 (36.00%), Postives = 74/125 (59.20%), Query Frame = 0 
Query:   64 EPADRIAIDLASNETARTIIHVQNIS-SQPVAFKVKTTQPKRYLVKPNQGILEAGGSDRIQIQIVPKD-RALLATKPG--QAASDRFLVQAVACEPRLTKL--ERESEDFLKELAALWSTLDKQA 183
            EPAD ++  L      + ++ ++N++  + +AFKVKTT+P RYLV+PNQG+L   GS  I + +  KD   LL   P   Q A+D+FLVQ++  +    +L   + +++   EL  +W+  DK+A
Sbjct:   19 EPADSLSFHLQPQTAPQAVLTIRNVADDRQIAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQLANDKFLVQSIYVDDSFYELVKTKSTKEMADELTNMWARTDKRA 143
[Close]
BLAST of NO20G02580 vs. NCBI_GenBank
Match: ETP32292.1 (hypothetical protein F442_19042 [Phytophthora parasitica P10297])

HSP 1 Score: 78.2 bits (191), Expect = 4.200e-11
Identity = 45/125 (36.00%), Postives = 74/125 (59.20%), Query Frame = 0 
Query:   64 EPADRIAIDLASNETARTIIHVQNIS-SQPVAFKVKTTQPKRYLVKPNQGILEAGGSDRIQIQIVPKD-RALLATKPG--QAASDRFLVQAVACEPRLTKL--ERESEDFLKELAALWSTLDKQA 183
            EPAD ++  L      + ++ ++N++  + +AFKVKTT+P RYLV+PNQG+L   GS  I + +  KD   LL   P   Q A+D+FLVQ++  +    +L   + +++   EL  +W+  DK+A
Sbjct:   19 EPADSLSFHLQPQTAPQAVLTIRNVADDRQIAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQLANDKFLVQSIYVDDSFYELVKTKSTKEMADELTNMWARTDKRA 143
[Close]
BLAST of NO20G02580 vs. NCBI_GenBank
Match: XP_002907537.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY64101.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 78.2 bits (191), Expect = 4.200e-11
Identity = 45/125 (36.00%), Postives = 74/125 (59.20%), Query Frame = 0 
Query:   64 EPADRIAIDLASNETARTIIHVQNIS-SQPVAFKVKTTQPKRYLVKPNQGILEAGGSDRIQIQIVPKD-RALLATKPG--QAASDRFLVQAVACEPRLTKL--ERESEDFLKELAALWSTLDKQA 183
            EPAD ++  L      + ++ ++N++  + +AFKVKTT+P RYLV+PNQG+L   GS  I + +  KD   LL   P   Q A+D+FLVQ++  +    +L   + +++   EL  +W+  DK+A
Sbjct:   19 EPADSLSFHLQPQTAPQAVLTIRNVADDRQIAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQLANDKFLVQSIYVDDSFYELVKTKSTKEMADELTNMWARTDKRA 143
[Close]
BLAST of NO20G02580 vs. NCBI_GenBank
Match: KUF94338.1 (Sulfate Permease (SulP) Family [Phytophthora nicotianae])

HSP 1 Score: 78.2 bits (191), Expect = 4.200e-11
Identity = 45/125 (36.00%), Postives = 74/125 (59.20%), Query Frame = 0 
Query:   64 EPADRIAIDLASNETARTIIHVQNIS-SQPVAFKVKTTQPKRYLVKPNQGILEAGGSDRIQIQIVPKD-RALLATKPG--QAASDRFLVQAVACEPRLTKL--ERESEDFLKELAALWSTLDKQA 183
            EPAD ++  L      + ++ ++N++  + +AFKVKTT+P RYLV+PNQG+L   GS  I + +  KD   LL   P   Q A+D+FLVQ++  +    +L   + +++   EL  +W+  DK+A
Sbjct:   19 EPADSLSFHLQPQTAPQAVLTIRNVADDRQIAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQLANDKFLVQSIYVDDSFYELVKTKSTKEMADELTNMWARTDKRA 143
[Close]
BLAST of NO20G02580 vs. NCBI_GenBank
Match: XP_009836805.1 (hypothetical protein H257_11527 [Aphanomyces astaci] >ETV73868.1 hypothetical protein H257_11527 [Aphanomyces astaci])

HSP 1 Score: 77.0 bits (188), Expect = 9.400e-11
Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = 0 
Query:   61 LKFEPADRIAIDLASNETARTIIHVQNISS-QPVAFKVKTTQPKRYLVKPNQGILEAGGSDRIQIQIVPKD---RALLATKPGQAASDRFLVQAVACEPRLTKL--ERESEDFLKELAALWSTLDKQAAHQSAKFSVGFTT-PYGGGA 202
            +  EPAD ++  L++N T +  + + N SS + VAFKVKTT+P RYLV+PNQG++    S  + + +  KD      L     Q ++D+FLVQ+V  E     L  ++ S++   +L +LW+  +K A   + K    FT    GGG+
Sbjct:   10 ITLEPADSLSFSLSTNSTPQAALTISNPSSVENVAFKVKTTRPMRYLVRPNQGVIGPNSSATVLVILQQKDCDELLRLDQAERQLSNDKFLVQSVGVEAEFCDLLTKKSSKEVNDDLTSLWNQAEK-AQISNKKLRCRFTEGTIGGGS 156
[Close]
BLAST of NO20G02580 vs. NCBI_GenBank
Match: XP_009836804.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV73869.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 77.0 bits (188), Expect = 9.400e-11
Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = 0 
Query:   61 LKFEPADRIAIDLASNETARTIIHVQNISS-QPVAFKVKTTQPKRYLVKPNQGILEAGGSDRIQIQIVPKD---RALLATKPGQAASDRFLVQAVACEPRLTKL--ERESEDFLKELAALWSTLDKQAAHQSAKFSVGFTT-PYGGGA 202
            +  EPAD ++  L++N T +  + + N SS + VAFKVKTT+P RYLV+PNQG++    S  + + +  KD      L     Q ++D+FLVQ+V  E     L  ++ S++   +L +LW+  +K A   + K    FT    GGG+
Sbjct:   10 ITLEPADSLSFSLSTNSTPQAALTISNPSSVENVAFKVKTTRPMRYLVRPNQGVIGPNSSATVLVILQQKDCDELLRLDQAERQLSNDKFLVQSVGVEAEFCDLLTKKSSKEVNDDLTSLWNQAEK-AQISNKKLRCRFTEGTIGGGS 156
[Close]
BLAST of NO20G02580 vs. NCBI_GenBank
Match: XP_009517319.1 (hypothetical protein PHYSODRAFT_353719 [Phytophthora sojae] >EGZ30044.1 hypothetical protein PHYSODRAFT_353719 [Phytophthora sojae])

HSP 1 Score: 76.6 bits (187), Expect = 1.200e-10
Identity = 58/179 (32.40%), Postives = 93/179 (51.96%), Query Frame = 0 
Query:   64 EPADRIAIDLASNETARTIIHVQNIS-SQPVAFKVKTTQPKRYLVKPNQGILEAGGSDRIQIQIVPKD-RALLATKPG--QAASDRFLVQAVACEPRLTKL--ERESEDFLKELAALWSTLDKQAAHQSAKFSVGFTTPYGGGAEGGKERGAAAGSVPDATAAFGVERVKELLARGGAR 237
            EPAD ++  L      + ++ ++N++  + +AFKVKTT+P RYLV+PNQG+L   GS  I + +  KD   LL   P   Q A+D+FLVQ++  +    +L   + +++   EL  +W+  DK+A   + K    F        + G+ER A+  S P   ++  V   K   A   AR
Sbjct:   19 EPADSLSFHLQPQTAPQAVLTIRNVADDRQIAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQLANDKFLVQSIYVDDSFYELVKTKSTKEMADELTNMWARTDKRAL-SNKKLRCRF-------VQDGEERPASPPS-PQRASSTNVSPAKTAAAASDAR 188
[Close]
BLAST of NO20G02580 vs. NCBI_GenBank
Match: GAX19204.1 (vesicle-associated membrane protein-associated protein A [Fistulifera solaris])

HSP 1 Score: 76.6 bits (187), Expect = 1.200e-10
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 0 
Query:   61 LKFEPADRIAIDLASNETARTI---IHVQNISSQPVAFKVKTTQPKRYLVKPNQGILEAGGSDRIQIQIVPKDRALLA---TKPGQ----AASDRFLVQAVACEPRLTKLERESEDFLKELAALWSTL 179
            L   P   +   L+S E + T    +   + SS P+AFKVKTTQP+RYLV+PNQG++E GG+  +QI +V K++  L     + GQ     + D+FLVQ+VA    L   +  S     EL +LW+T+
Sbjct:    8 LDLNPDSTLQFTLSSQEQSPTCALELRHPDASSAPIAFKVKTTQPRRYLVRPNQGLIEPGGAQTVQILLVEKEKNSLLQSYERLGQPTLDQSKDKFLVQSVAI---LDASKLASLKDYDELTSLWATV 132
[Close]
BLAST of NO20G02580 vs. NCBI_GenBank
Match: GAX22677.1 (vesicle-associated membrane protein-associated protein A [Fistulifera solaris])

HSP 1 Score: 75.9 bits (185), Expect = 2.100e-10
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 0 
Query:   51 GKRGASMTTFLKFEPADRIAIDLASNETARTI---IHVQNISSQPVAFKVKTTQPKRYLVKPNQGILEAGGSDRIQIQIVPKDRALLA---TKPGQ----AASDRFLVQAVACEPRLTKLERESEDFLKELAALWSTL 179
            G +  S+   L   P   +   L++ E + +    +   + SS P+AFKVKTTQP+RYLV+PNQG++E GG+  +QI +V K++  L     + GQ     + D+FLVQ+VA    L   +  S     EL +LW+T+
Sbjct:    3 GYKLLSVDAVLDLNPDSTLQFTLSNQEQSPSCSLELRHPDASSAPIAFKVKTTQPRRYLVRPNQGLIEPGGAQTVQILLVEKEKNSLLQSYERLGQPTLDQSKDKFLVQSVAI---LDASKLASLKDYDELTSLWATV 137
The following BLAST results are available for this feature:
BLAST of NO20G02580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OWZ24273.11.900e-1136.80hypothetical protein PHMEG_000690 [Phytophthora me... [more]
XP_008897152.14.200e-1136.00hypothetical protein PPTG_05368 [Phytophthora para... [more]
ETP32292.14.200e-1136.00hypothetical protein F442_19042 [Phytophthora para... [more]
XP_002907537.14.200e-1136.00conserved hypothetical protein [Phytophthora infes... [more]
KUF94338.14.200e-1136.00Sulfate Permease (SulP) Family [Phytophthora nicot... [more]
XP_009836805.19.400e-1135.14hypothetical protein H257_11527 [Aphanomyces astac... [more]
XP_009836804.19.400e-1135.14hypothetical protein, variant [Aphanomyces astaci]... [more]
XP_009517319.11.200e-1032.40hypothetical protein PHYSODRAFT_353719 [Phytophtho... [more]
GAX19204.11.200e-1039.06vesicle-associated membrane protein-associated pro... [more]
GAX22677.12.100e-1036.23vesicle-associated membrane protein-associated pro... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR113ngnoR113Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02580.1NO20G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02580.1NO20G02580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02580 ID=NO20G02580|Name=NO20G02580|organism=Nannochloropsis oceanica|type=gene|length=3362bp
CTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGCGGCTGTTGTTGTTGGT
GTTGTTATTGGTGCTGCTCCTGCTCGTACCACTGCTACTTTTTCTTCTTG
TCGAGGATTTAAAAGCAATCACCGGACGCGAGCGACCCAACATGGTCGAC
ACTGCGTTGGCTGTCCCTGTCACTGTGCTAGTGGCTGCTACACGCATGTA
GAGGCGTCAAGTCAAGGGGAAGGGTGGCCACAGCCAGGTTGAAAGCAGGG
AGGGGGTGGGGGAGGCTGGAAAAAGCAGGCCTGTTGGTTTGTGTCGGGAG
GGTCGGCCAGATGAAGGGAAAGAGATCACCAGGCGCTCGCGTGTTGTTTT
ACGGAGACTCTATGCTTGTCATCCATTCTTCTCGTTACATGGCAGTGGTG
TCGAGGTGCCAATCGATGCCTCGACCTCATGCACGCAATACCAACTTCAC
CGCGAGGCAAGCGAGGCGCCCGCCAGCGTGACGAATGATGTTTTGGCCTC
GTCGGGACCCTGTTCCCTTACCCCATGATTCGTCTCACCCTTGCTCCCTT
TCCATCTACACCTACACATTGAAATGGCGCCTTCACGCCATGTGGGCGCG
GGGGTTCTCTTCCCACTTCCCGTATCGCGCGTTCTGGTTGGCGACGTCGA
GCACCTCCGAGGAGTGTTCTCCCGCAGTGCTCGTGCCGGCAGTTGTCTCA
TTGTTTACACGCTACAGCACTGTCGGAACCCCAGCTCCCACCGCCCTACG
TCCGTCACCCACCAACACCTAGCATGCACACACACATATCCTGGGTCATT
CATCTGGCGTGGCTGGCCCCGTGTGTTGGCACATGCGACGGCGGGGGAAG
CATGGAGGCGCGAACACCCAGAAGCTCCGCCGCCACGACTGCCTGGCCTC
CTCGCCCTGTCTACCCGCCCCCTCTCCGTACGACGCGCAACCTCTGAACC
CTCCCTACCCATCTATTTTCTATACTGGTACAGGGAAACGTGGCGCCAGC
ATGACGACGTTCTTAAAATTCGAGCCGGCGGACCGTATCGCTATCGACCT
GGCCTCCAACGAGACGGCACGAACCATCATCCACGTCCAGAATATCAgta
cgtaggagggaggcacagacacataaacagacagacaaacaggcagacaa
ggagggtgggagagggaaagtggccaggagggaggattagttagtgtggt
ggagagacaagcggaagagatgaagggaaggtcggcgctccacacgaccc
gagtgcgcctcattacatcaccaatatgcaacgcccctgccgccttctca
tgcctatcctcctcccattcatccttctcctcctacccccctttcttcct
ctatcctcctttttccttccctccttttttccctcctcttccttctctta
tctccgatctacatggcgtaccatacgtgccttcaacctaaaactttcgc
tccttgcttccctcccttcccccctccctccctgcctcctgcccttcttc
cagGCTCGCAGCCCGTAGCCTTTAAGGTCAAGACGACGCAGCCCAAGCGA
TACCTCGTCAAGCCCAACCAAGgtaacagccccctccacccttccttccc
tccctccctccctccttccctccctcctttcttctttcgttcgccctttt
ctctttcttgctctcttctcctcttctcgcttattgacaccacacttaga
tcgaaggaagaagagagaactcctagcacccctcccactccctctcatga
caacccgcctctaaacccccccccctccctccctccctccctccccctct
ccctccctcatgcccacacacgcagGCATTCTGGAGGCAGGAGGCAGCGA
CCGCATCCAGATTCAGATCGTGCCCAAAGACCGGGCCTTGCTTGCGACCA
AGCCAGgtgaggagggagggagggagggagggagggagggagggcaagac
gcatacctcatgacaagtttctcaggggatccaggaaggctcacacccac
tcctcccctcccctccctcccgcattgtcccagGCCAAGCGGCCTCAGAT
CGCTTTTTGGTGCAGGCCGTGGCGTGTGAGCCGCGTCTGACAAAGCTGGA
GCGAGAGAGCGAGGATTTCCTCAAGGAGCTCGCCGCCTTGTGGAgtacgt
gccctcccctcccttcatccctcccttcctctcttcctccttccctccct
ccctttgcgccgtccctgttgtgggtgccctagaccagcctggatactca
gccctccctccctccttccctccctctctctccctccccctccctcgtcc
tccctccttccctccctctctcccccccccctccctccctctctcccccc
cccctccctccctccctccccccctccctccccttaccagGCACGCTCGA
CAAGCAGGCCGCGCATCAGTCAGCCAAGTTCTCGGTGGGCTTCACGACCC
CCTACGGGGGAGGGGCCGAGGGAGGAAAAGAGCGAGGGGCGGCGGCAGGA
AGCGTGCCCGACGCCACTGCCGCATTCGGCGTGGAGAGGGTTAAGGAGCT
CTTGGCCAGGGGGGGGGCGCGGGTGAGGGGGGGGAGGAGGTGGCGATCAT
GCGGAGGAAGTACGACGATCTGGTGTCCTACACAAgtacgtgccgaagag
taagccatccccttcctccctccctccctcccttcctccctccctccctc
cctccctccctccctccctccctccctccctccctccctccctccctccc
tccctccctctccctttttgagtgagaaggccccgcatgggagtaggctg
gagcctgtgaagagcaccatcatctcaccctctctccctccctctctcct
tagTCTCGCTGACGGCGGAGCGCGATCGTCTGCGCACGACGTTGGAGGGC
ACCAAGAAGGAATTGAACAAGGCCGTCATTGCGCGAATGGCCTCCGAGGG
GAAGGGAGGACGGGGGGGAGGAAGTGGGGGAGCGCTAGGGAGCGTGATGA
AGGAGGGAGGGAAGGAGGGGAGGTCGGTGGGGCTGGCGCTGGCGTTGCTG
CTGGTCGCCCTGGCCTTTTTGGCAGGTCATCTGGTGCACTTTTGAGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGTCACAGGCCTTTGATGTG
GGTCATGCGGGAAGACGCAGAAAGAAGACAAAGAATATACAAGAGAGAGC
AGGGAGAGAGAGAAAACAGAGGTTGGAGTGAGAGGGACAGAAATAGGAAA
AGGAGAGGGGAGAGAGAGAGGACAGAGAGGGCGAGGAGAAGAGAGAGGGG
AGGGAGGGAGAGGGAGCGGGGGGAGTGAGAAAAGAGGCCACGGAGATCCT
GGCGAGTGGTGG
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protein sequence of NO20G02580.1

>NO20G02580.1-protein ID=NO20G02580.1-protein|Name=NO20G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MRRRGKHGGANTQKLRRHDCLASSPCLPAPSPYDAQPLNPPYPSIFYTGT
GKRGASMTTFLKFEPADRIAIDLASNETARTIIHVQNISSQPVAFKVKTT
QPKRYLVKPNQGILEAGGSDRIQIQIVPKDRALLATKPGQAASDRFLVQA
VACEPRLTKLERESEDFLKELAALWSTLDKQAAHQSAKFSVGFTTPYGGG
AEGGKERGAAAGSVPDATAAFGVERVKELLARGGARVRGGRRWRSCGGST
TIWCPTQSR*
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Synonyms
Publications