NO20G02580.1, NO20G02580.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO20G02580.1
Unique Name	NO20G02580.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2112
Alignment location	chr20:817863..821224 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr20	genome	chr20:817863..821224 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO20G02580.1 vs.
Match: OWZ24273.1 (hypothetical protein PHMEG_000690 [Phytophthora megakarya])

HSP 1 Score: 79.3 bits (194), Expect = 1.900e-11
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 0

Query:   64 EPADRIAIDLASNETARTIIHVQNISS-QPVAFKVKTTQPKRYLVKPNQGILEAGGSDRIQIQIVPKD-RALLATKPG--QAASDRFLVQAVACEPRLTKL--ERESEDFLKELAALWSTLDKQA 183
            EPAD +A  L      + ++ ++N++  + +AFKVKTT+P RYLV+PNQG+L   GS  I + +  KD   LL   P   Q A+D+FLVQ++  +    +L   + +++   EL  +W+  DK+A
Sbjct:   19 EPADSLAFHLQPQTAPQAVLTIRNVADDRQIAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQLANDKFLVQSIYVDDSFYELVKTKSTKEMADELTNMWARTDKRA 143

The following BLAST results are available for this feature:

BLAST of NO20G02580.1 vs.

BLAST of NO20G02580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
OWZ24273.1	1.900e-11	36.80	hypothetical protein PHMEG_000690 [Phytophthora me...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO20G02580	NO20G02580	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO20G02580.1	NO20G02580.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO20G02580.1.cds1	NO20G02580.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02580.1.cds2	NO20G02580.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02580.1.cds3	NO20G02580.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02580.1.cds4	NO20G02580.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02580.1.cds5	NO20G02580.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02580.1.cds6	NO20G02580.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr20:817863..821224-
coding sequence from alignment at chr20:817863..821224-

mRNA sequence

>NO20G02580.1 ID=NO20G02580.1|Name=NO20G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2112bp
CTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGCGGCTGTTGTTGTTGGT
GTTGTTATTGGTGCTGCTCCTGCTCGTACCACTGCTACTTTTTCTTCTTG
TCGAGGATTTAAAAGCAATCACCGGACGCGAGCGACCCAACATGGTCGAC
ACTGCGTTGGCTGTCCCTGTCACTGTGCTAGTGGCTGCTACACGCATGTA
GAGGCGTCAAGTCAAGGGGAAGGGTGGCCACAGCCAGGTTGAAAGCAGGG
AGGGGGTGGGGGAGGCTGGAAAAAGCAGGCCTGTTGGTTTGTGTCGGGAG
GGTCGGCCAGATGAAGGGAAAGAGATCACCAGGCGCTCGCGTGTTGTTTT
ACGGAGACTCTATGCTTGTCATCCATTCTTCTCGTTACATGGCAGTGGTG
TCGAGGTGCCAATCGATGCCTCGACCTCATGCACGCAATACCAACTTCAC
CGCGAGGCAAGCGAGGCGCCCGCCAGCGTGACGAATGATGTTTTGGCCTC
GTCGGGACCCTGTTCCCTTACCCCATGATTCGTCTCACCCTTGCTCCCTT
TCCATCTACACCTACACATTGAAATGGCGCCTTCACGCCATGTGGGCGCG
GGGGTTCTCTTCCCACTTCCCGTATCGCGCGTTCTGGTTGGCGACGTCGA
GCACCTCCGAGGAGTGTTCTCCCGCAGTGCTCGTGCCGGCAGTTGTCTCA
TTGTTTACACGCTACAGCACTGTCGGAACCCCAGCTCCCACCGCCCTACG
TCCGTCACCCACCAACACCTAGCATGCACACACACATATCCTGGGTCATT
CATCTGGCGTGGCTGGCCCCGTGTGTTGGCACATGCGACGGCGGGGGAAG
CATGGAGGCGCGAACACCCAGAAGCTCCGCCGCCACGACTGCCTGGCCTC
CTCGCCCTGTCTACCCGCCCCCTCTCCGTACGACGCGCAACCTCTGAACC
CTCCCTACCCATCTATTTTCTATACTGGTACAGGGAAACGTGGCGCCAGC
ATGACGACGTTCTTAAAATTCGAGCCGGCGGACCGTATCGCTATCGACCT
GGCCTCCAACGAGACGGCACGAACCATCATCCACGTCCAGAATATCAGCT
CGCAGCCCGTAGCCTTTAAGGTCAAGACGACGCAGCCCAAGCGATACCTC
GTCAAGCCCAACCAAGGCATTCTGGAGGCAGGAGGCAGCGACCGCATCCA
GATTCAGATCGTGCCCAAAGACCGGGCCTTGCTTGCGACCAAGCCAGGCC
AAGCGGCCTCAGATCGCTTTTTGGTGCAGGCCGTGGCGTGTGAGCCGCGT
CTGACAAAGCTGGAGCGAGAGAGCGAGGATTTCCTCAAGGAGCTCGCCGC
CTTGTGGAGCACGCTCGACAAGCAGGCCGCGCATCAGTCAGCCAAGTTCT
CGGTGGGCTTCACGACCCCCTACGGGGGAGGGGCCGAGGGAGGAAAAGAG
CGAGGGGCGGCGGCAGGAAGCGTGCCCGACGCCACTGCCGCATTCGGCGT
GGAGAGGGTTAAGGAGCTCTTGGCCAGGGGGGGGGCGCGGGTGAGGGGGG
GGAGGAGGTGGCGATCATGCGGAGGAAGTACGACGATCTGGTGTCCTACA
CAATCTCGCTGACGGCGGAGCGCGATCGTCTGCGCACGACGTTGGAGGGC
ACCAAGAAGGAATTGAACAAGGCCGTCATTGCGCGAATGGCCTCCGAGGG
GAAGGGAGGACGGGGGGGAGGAAGTGGGGGAGCGCTAGGGAGCGTGATGA
AGGAGGGAGGGAAGGAGGGGAGGTCGGTGGGGCTGGCGCTGGCGTTGCTG
CTGGTCGCCCTGGCCTTTTTGGCAGGTCATCTGGTGCACTTTTGAGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGTCACAGGCCTTTGATGTG
GGTCATGCGGGAAGACGCAGAAAGAAGACAAAGAATATACAAGAGAGAGC
AGGGAGAGAGAGAAAACAGAGGTTGGAGTGAGAGGGACAGAAATAGGAAA
AGGAGAGGGGAGAGAGAGAGGACAGAGAGGGCGAGGAGAAGAGAGAGGGG
AGGGAGGGAGAGGGAGCGGGGGGAGTGAGAAAAGAGGCCACGGAGATCCT
GGCGAGTGGTGG

protein sequence of NO20G02580.1

>NO20G02580.1-protein ID=NO20G02580.1-protein|Name=NO20G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MRRRGKHGGANTQKLRRHDCLASSPCLPAPSPYDAQPLNPPYPSIFYTGT
GKRGASMTTFLKFEPADRIAIDLASNETARTIIHVQNISSQPVAFKVKTT
QPKRYLVKPNQGILEAGGSDRIQIQIVPKDRALLATKPGQAASDRFLVQA
VACEPRLTKLERESEDFLKELAALWSTLDKQAAHQSAKFSVGFTTPYGGG
AEGGKERGAAAGSVPDATAAFGVERVKELLARGGARVRGGRRWRSCGGST
TIWCPTQSR*

mRNA from alignment at chr20:817863..821224-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO20G02580.1 ID=NO20G02580.1|Name=NO20G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=3362bp|location=Sequence derived from alignment at chr20:817863..821224- (Nannochloropsis oceanica)
CTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGCGGCTGTTGTTGTTGGT
GTTGTTATTGGTGCTGCTCCTGCTCGTACCACTGCTACTTTTTCTTCTTG
TCGAGGATTTAAAAGCAATCACCGGACGCGAGCGACCCAACATGGTCGAC
ACTGCGTTGGCTGTCCCTGTCACTGTGCTAGTGGCTGCTACACGCATGTA
GAGGCGTCAAGTCAAGGGGAAGGGTGGCCACAGCCAGGTTGAAAGCAGGG
AGGGGGTGGGGGAGGCTGGAAAAAGCAGGCCTGTTGGTTTGTGTCGGGAG
GGTCGGCCAGATGAAGGGAAAGAGATCACCAGGCGCTCGCGTGTTGTTTT
ACGGAGACTCTATGCTTGTCATCCATTCTTCTCGTTACATGGCAGTGGTG
TCGAGGTGCCAATCGATGCCTCGACCTCATGCACGCAATACCAACTTCAC
CGCGAGGCAAGCGAGGCGCCCGCCAGCGTGACGAATGATGTTTTGGCCTC
GTCGGGACCCTGTTCCCTTACCCCATGATTCGTCTCACCCTTGCTCCCTT
TCCATCTACACCTACACATTGAAATGGCGCCTTCACGCCATGTGGGCGCG
GGGGTTCTCTTCCCACTTCCCGTATCGCGCGTTCTGGTTGGCGACGTCGA
GCACCTCCGAGGAGTGTTCTCCCGCAGTGCTCGTGCCGGCAGTTGTCTCA
TTGTTTACACGCTACAGCACTGTCGGAACCCCAGCTCCCACCGCCCTACG
TCCGTCACCCACCAACACCTAGCATGCACACACACATATCCTGGGTCATT
CATCTGGCGTGGCTGGCCCCGTGTGTTGGCACATGCGACGGCGGGGGAAG
CATGGAGGCGCGAACACCCAGAAGCTCCGCCGCCACGACTGCCTGGCCTC
CTCGCCCTGTCTACCCGCCCCCTCTCCGTACGACGCGCAACCTCTGAACC
CTCCCTACCCATCTATTTTCTATACTGGTACAGGGAAACGTGGCGCCAGC
ATGACGACGTTCTTAAAATTCGAGCCGGCGGACCGTATCGCTATCGACCT
GGCCTCCAACGAGACGGCACGAACCATCATCCACGTCCAGAATATCAGTA
CGTAGGAGGGAGGCACAGACACATAAACAGACAGACAAACAGGCAGACAA
GGAGGGTGGGAGAGGGAAAGTGGCCAGGAGGGAGGATTAGTTAGTGTGGT
GGAGAGACAAGCGGAAGAGATGAAGGGAAGGTCGGCGCTCCACACGACCC
GAGTGCGCCTCATTACATCACCAATATGCAACGCCCCTGCCGCCTTCTCA
TGCCTATCCTCCTCCCATTCATCCTTCTCCTCCTACCCCCCTTTCTTCCT
CTATCCTCCTTTTTCCTTCCCTCCTTTTTTCCCTCCTCTTCCTTCTCTTA
TCTCCGATCTACATGGCGTACCATACGTGCCTTCAACCTAAAACTTTCGC
TCCTTGCTTCCCTCCCTTCCCCCCTCCCTCCCTGCCTCCTGCCCTTCTTC
CAGGCTCGCAGCCCGTAGCCTTTAAGGTCAAGACGACGCAGCCCAAGCGA
TACCTCGTCAAGCCCAACCAAGGTAACAGCCCCCTCCACCCTTCCTTCCC
TCCCTCCCTCCCTCCTTCCCTCCCTCCTTTCTTCTTTCGTTCGCCCTTTT
CTCTTTCTTGCTCTCTTCTCCTCTTCTCGCTTATTGACACCACACTTAGA
TCGAAGGAAGAAGAGAGAACTCCTAGCACCCCTCCCACTCCCTCTCATGA
CAACCCGCCTCTAAACCCCCCCCCCTCCCTCCCTCCCTCCCTCCCCCTCT
CCCTCCCTCATGCCCACACACGCAGGCATTCTGGAGGCAGGAGGCAGCGA
CCGCATCCAGATTCAGATCGTGCCCAAAGACCGGGCCTTGCTTGCGACCA
AGCCAGGTGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCAAGAC
GCATACCTCATGACAAGTTTCTCAGGGGATCCAGGAAGGCTCACACCCAC
TCCTCCCCTCCCCTCCCTCCCGCATTGTCCCAGGCCAAGCGGCCTCAGAT
CGCTTTTTGGTGCAGGCCGTGGCGTGTGAGCCGCGTCTGACAAAGCTGGA
GCGAGAGAGCGAGGATTTCCTCAAGGAGCTCGCCGCCTTGTGGAGTACGT
GCCCTCCCCTCCCTTCATCCCTCCCTTCCTCTCTTCCTCCTTCCCTCCCT
CCCTTTGCGCCGTCCCTGTTGTGGGTGCCCTAGACCAGCCTGGATACTCA
GCCCTCCCTCCCTCCTTCCCTCCCTCTCTCTCCCTCCCCCTCCCTCGTCC
TCCCTCCTTCCCTCCCTCTCTCCCCCCCCCCTCCCTCCCTCTCTCCCCCC
CCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCCTTACCAGGCACGCTCGA
CAAGCAGGCCGCGCATCAGTCAGCCAAGTTCTCGGTGGGCTTCACGACCC
CCTACGGGGGAGGGGCCGAGGGAGGAAAAGAGCGAGGGGCGGCGGCAGGA
AGCGTGCCCGACGCCACTGCCGCATTCGGCGTGGAGAGGGTTAAGGAGCT
CTTGGCCAGGGGGGGGGCGCGGGTGAGGGGGGGGAGGAGGTGGCGATCAT
GCGGAGGAAGTACGACGATCTGGTGTCCTACACAAGTACGTGCCGAAGAG
TAAGCCATCCCCTTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCTCCCTTTTTGAGTGAGAAGGCCCCGCATGGGAGTAGGCTG
GAGCCTGTGAAGAGCACCATCATCTCACCCTCTCTCCCTCCCTCTCTCCT
TAGTCTCGCTGACGGCGGAGCGCGATCGTCTGCGCACGACGTTGGAGGGC
ACCAAGAAGGAATTGAACAAGGCCGTCATTGCGCGAATGGCCTCCGAGGG
GAAGGGAGGACGGGGGGGAGGAAGTGGGGGAGCGCTAGGGAGCGTGATGA
AGGAGGGAGGGAAGGAGGGGAGGTCGGTGGGGCTGGCGCTGGCGTTGCTG
CTGGTCGCCCTGGCCTTTTTGGCAGGTCATCTGGTGCACTTTTGAGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGTCACAGGCCTTTGATGTG
GGTCATGCGGGAAGACGCAGAAAGAAGACAAAGAATATACAAGAGAGAGC
AGGGAGAGAGAGAAAACAGAGGTTGGAGTGAGAGGGACAGAAATAGGAAA
AGGAGAGGGGAGAGAGAGAGGACAGAGAGGGCGAGGAGAAGAGAGAGGGG
AGGGAGGGAGAGGGAGCGGGGGGAGTGAGAAAAGAGGCCACGGAGATCCT
GGCGAGTGGTGG

Coding sequence (CDS) from alignment at chr20:817863..821224-

>NO20G02580.1 ID=NO20G02580.1|Name=NO20G02580.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr20:817863..821224- (Nannochloropsis oceanica)
ATGCGACGGCGGGGGAAGCATGGAGGCGCGAACACCCAGAAGCTCCGCCG
CCACGACTGCCTGGCCTCCTCGCCCTGTCTACCCGCCCCCTCTCCGTACG
ACGCGCAACCTCTGAACCCTCCCTACCCATCTATTTTCTATACTGGTACA
GGGAAACGTGGCGCCAGCATGACGACGTTCTTAAAATTCGAGCCGGCGGA
CCGTATCGCTATCGACCTGGCCTCCAACGAGACGGCACGAACCATCATCC
ACGTCCAGAATATCAGCTCGCAGCCCGTAGCCTTTAAGGTCAAGACGACG
CAGCCCAAGCGATACCTCGTCAAGCCCAACCAAGGCATTCTGGAGGCAGG
AGGCAGCGACCGCATCCAGATTCAGATCGTGCCCAAAGACCGGGCCTTGC
TTGCGACCAAGCCAGGCCAAGCGGCCTCAGATCGCTTTTTGGTGCAGGCC
GTGGCGTGTGAGCCGCGTCTGACAAAGCTGGAGCGAGAGAGCGAGGATTT
CCTCAAGGAGCTCGCCGCCTTGTGGAGCACGCTCGACAAGCAGGCCGCGC
ATCAGTCAGCCAAGTTCTCGGTGGGCTTCACGACCCCCTACGGGGGAGGG
GCCGAGGGAGGAAAAGAGCGAGGGGCGGCGGCAGGAAGCGTGCCCGACGC
CACTGCCGCATTCGGCGTGGAGAGGGTTAAGGAGCTCTTGGCCAGGGGGG
GGGCGCGGGTGAGGGGGGGGAGGAGGTGGCGATCATGCGGAGGAAGTACG
ACGATCTGGTGTCCTACACAATCTCGCTGA

Synonyms

Publications