NO20G02490, NO20G02490 (gene) Nannochloropsis oceanica

Overview
NameNO20G02490
Unique NameNO20G02490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1549
Alignment locationchr20:768949..770497 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:768949..770497 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO20G02490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02490.1NO20G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02490.1NO20G02490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02490 ID=NO20G02490|Name=NO20G02490|organism=Nannochloropsis oceanica|type=gene|length=1549bp
ATGAGTCAGTCGCGGCTCTCGGTGACACTGGACATGATCAAGTTACCGCA
GGAATTGGCGGGCATTCAGGTCCTGTTTGTCCGAGACGGACCTTATCGGG
ACGCAAGACAGCGAGTCGCTATGGGGGAGAGAGTGTCGGTGGGCCTTCAA
CTCCTCTCGgtttgtgggtcttttgtccaggaaaatcaagcaatacgtga
aagaaaatcaaaagggggggaaccaaaagcgactttgttgcttgctttgt
tggcacttgctttctcactctccctgaccaccgtcagcgttgtttctgag
gctcactacccgccacacgggcggaaacgactcgctccccttagacctcc
cctctatgcctgacgccacactgcttactgtgacaagtatcccctcgcaa
ttatatcattttacatgccccaacttgcagcgttcttccacatgtctggt
attctatacctttgtttgctttctttgcatggaagtgtcgtcaatttcct
tttaatggcagGCAGCCAAGGCTCGCACTGTTCGACATGCAGCAAGCAAG
CAGCTCCAGCATGAGAAGAGGCCAGCAAAGGTAAgtaccgcatgtgccac
gcatgtggatgaaaatgtcggctacggatcgtctgagagctgtatgatgg
tagattctgacgacaaatgtgaagaatcgatcaccgcagcagtagcaccc
agcagcttaagcaacaataagtggtcggtggtagtgtacgacaattgggc
ccagtactacattgggataatcttgaccctctgtcagCTGCCTACGCGCA
CGATGAGGCTGCACGGTCTTTCGGTGCAAATGTGATCCTGAAATTCAATG
GGGATGGAAGCTCTAACTTGCAACGGTGCAGACTGAGGCGTTCAATCTGC
CAACTACACATTGTGGGGCATGAGGTTGGAGGGCTTAGGGGGAAGGACAA
GAAAAAGAAGAAGAAGAGAAAAGAGGAAGATGAAGAAGAGGAAGAGGAGG
ATGGGGAGGAGGAGGAGGAGAAGGAGGAGGATTATGATGGTGATGATGAT
GATGAGGAGGAGGAGGAGGGCATGTTTCATTCCTGCACATGTTTTTCTCG
GGAAAAATCTGGCCTTACTGCAGGCCCGGGAACCAAGAGACGGAAGTTCC
GCTGTGATGTGGCTGACTCAAGTGGAAGGAGCGGGGTTTCTATGGCGCCT
ATACGATGCGCCACAGGGCCAATTGCAACTCCTTTGAAAGAAGCATGGAC
GGGAGCCATATTGGAGGAAGGTGCGAACAAAAATGAGGGCGGCGATGTTC
TTGAAGTCGGTCGTGACGAAGTACTCGTCCTCCTGCAGATCAACCATCAA
ATCAGCTTCTATACTGAGTATCGCATCCGCTTTGTCGGAGGATTTCGTTC
ACTTGGGTATCAAAAAGAGGTGATTGGCACGTACCCTGAAATTACGTGTA
ATCGCCTCCTGCTCTCTAATACACTCATCCTCGCCCTCTCTTCGTTACTC
CTGCTGCAACCGATCTCGCCCTTACAGATCGCCTAGCCATTGCCGAAGC
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protein sequence of NO20G02490.1

>NO20G02490.1-protein ID=NO20G02490.1-protein|Name=NO20G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MSQSRLSVTLDMIKLPQELAGIQVLFVRDGPYRDARQRVAMGERVSVGLQ
LLSAAKARTVRHAASKQLQHEKRPAKVTAYAHDEAARSFGANVILKFNGD
GSSNLQRCRLRRSICQLHIVGHEVGGLRGKDKKKKKKRKEEDEEEEEEDG
EEEEEKEEDYDGDDDDEEEEEGMFHSCTCFSREKSGLTAGPGTKRRKFRC
DVADSSGRSGVSMAPIRCATGPIATPLKEAWTGAILEEGANKNEGGDVLE
VGRDEVLVLLQINHQISFYTEYRIRFVGGFRSLGYQKEVIGTYPEITCNR
LLLSNTLILALSSLLLLQPISPLQIA*
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Synonyms
Publications