NO20G02490.1, NO20G02490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02490.1
Unique NameNO20G02490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length994
Alignment locationchr20:768949..770497 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:768949..770497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO20G02490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02490NO20G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02490.1NO20G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02490.1.cds1NO20G02490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02490.1.cds2NO20G02490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02490.1.cds3NO20G02490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02490.1 ID=NO20G02490.1|Name=NO20G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=994bp
ATGAGTCAGTCGCGGCTCTCGGTGACACTGGACATGATCAAGTTACCGCA
GGAATTGGCGGGCATTCAGGTCCTGTTTGTCCGAGACGGACCTTATCGGG
ACGCAAGACAGCGAGTCGCTATGGGGGAGAGAGTGTCGGTGGGCCTTCAA
CTCCTCTCGGCAGCCAAGGCTCGCACTGTTCGACATGCAGCAAGCAAGCA
GCTCCAGCATGAGAAGAGGCCAGCAAAGGTAACTGCCTACGCGCACGATG
AGGCTGCACGGTCTTTCGGTGCAAATGTGATCCTGAAATTCAATGGGGAT
GGAAGCTCTAACTTGCAACGGTGCAGACTGAGGCGTTCAATCTGCCAACT
ACACATTGTGGGGCATGAGGTTGGAGGGCTTAGGGGGAAGGACAAGAAAA
AGAAGAAGAAGAGAAAAGAGGAAGATGAAGAAGAGGAAGAGGAGGATGGG
GAGGAGGAGGAGGAGAAGGAGGAGGATTATGATGGTGATGATGATGATGA
GGAGGAGGAGGAGGGCATGTTTCATTCCTGCACATGTTTTTCTCGGGAAA
AATCTGGCCTTACTGCAGGCCCGGGAACCAAGAGACGGAAGTTCCGCTGT
GATGTGGCTGACTCAAGTGGAAGGAGCGGGGTTTCTATGGCGCCTATACG
ATGCGCCACAGGGCCAATTGCAACTCCTTTGAAAGAAGCATGGACGGGAG
CCATATTGGAGGAAGGTGCGAACAAAAATGAGGGCGGCGATGTTCTTGAA
GTCGGTCGTGACGAAGTACTCGTCCTCCTGCAGATCAACCATCAAATCAG
CTTCTATACTGAGTATCGCATCCGCTTTGTCGGAGGATTTCGTTCACTTG
GGTATCAAAAAGAGGTGATTGGCACGTACCCTGAAATTACGTGTAATCGC
CTCCTGCTCTCTAATACACTCATCCTCGCCCTCTCTTCGTTACTCCTGCT
GCAACCGATCTCGCCCTTACAGATCGCCTAGCCATTGCCGAAGC
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protein sequence of NO20G02490.1

>NO20G02490.1-protein ID=NO20G02490.1-protein|Name=NO20G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MSQSRLSVTLDMIKLPQELAGIQVLFVRDGPYRDARQRVAMGERVSVGLQ
LLSAAKARTVRHAASKQLQHEKRPAKVTAYAHDEAARSFGANVILKFNGD
GSSNLQRCRLRRSICQLHIVGHEVGGLRGKDKKKKKKRKEEDEEEEEEDG
EEEEEKEEDYDGDDDDEEEEEGMFHSCTCFSREKSGLTAGPGTKRRKFRC
DVADSSGRSGVSMAPIRCATGPIATPLKEAWTGAILEEGANKNEGGDVLE
VGRDEVLVLLQINHQISFYTEYRIRFVGGFRSLGYQKEVIGTYPEITCNR
LLLSNTLILALSSLLLLQPISPLQIA*
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mRNA from alignment at chr20:768949..770497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02490.1 ID=NO20G02490.1|Name=NO20G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1549bp|location=Sequence derived from alignment at chr20:768949..770497- (Nannochloropsis oceanica)
ATGAGTCAGTCGCGGCTCTCGGTGACACTGGACATGATCAAGTTACCGCA
GGAATTGGCGGGCATTCAGGTCCTGTTTGTCCGAGACGGACCTTATCGGG
ACGCAAGACAGCGAGTCGCTATGGGGGAGAGAGTGTCGGTGGGCCTTCAA
CTCCTCTCGGTTTGTGGGTCTTTTGTCCAGGAAAATCAAGCAATACGTGA
AAGAAAATCAAAAGGGGGGGAACCAAAAGCGACTTTGTTGCTTGCTTTGT
TGGCACTTGCTTTCTCACTCTCCCTGACCACCGTCAGCGTTGTTTCTGAG
GCTCACTACCCGCCACACGGGCGGAAACGACTCGCTCCCCTTAGACCTCC
CCTCTATGCCTGACGCCACACTGCTTACTGTGACAAGTATCCCCTCGCAA
TTATATCATTTTACATGCCCCAACTTGCAGCGTTCTTCCACATGTCTGGT
ATTCTATACCTTTGTTTGCTTTCTTTGCATGGAAGTGTCGTCAATTTCCT
TTTAATGGCAGGCAGCCAAGGCTCGCACTGTTCGACATGCAGCAAGCAAG
CAGCTCCAGCATGAGAAGAGGCCAGCAAAGGTAAGTACCGCATGTGCCAC
GCATGTGGATGAAAATGTCGGCTACGGATCGTCTGAGAGCTGTATGATGG
TAGATTCTGACGACAAATGTGAAGAATCGATCACCGCAGCAGTAGCACCC
AGCAGCTTAAGCAACAATAAGTGGTCGGTGGTAGTGTACGACAATTGGGC
CCAGTACTACATTGGGATAATCTTGACCCTCTGTCAGCTGCCTACGCGCA
CGATGAGGCTGCACGGTCTTTCGGTGCAAATGTGATCCTGAAATTCAATG
GGGATGGAAGCTCTAACTTGCAACGGTGCAGACTGAGGCGTTCAATCTGC
CAACTACACATTGTGGGGCATGAGGTTGGAGGGCTTAGGGGGAAGGACAA
GAAAAAGAAGAAGAAGAGAAAAGAGGAAGATGAAGAAGAGGAAGAGGAGG
ATGGGGAGGAGGAGGAGGAGAAGGAGGAGGATTATGATGGTGATGATGAT
GATGAGGAGGAGGAGGAGGGCATGTTTCATTCCTGCACATGTTTTTCTCG
GGAAAAATCTGGCCTTACTGCAGGCCCGGGAACCAAGAGACGGAAGTTCC
GCTGTGATGTGGCTGACTCAAGTGGAAGGAGCGGGGTTTCTATGGCGCCT
ATACGATGCGCCACAGGGCCAATTGCAACTCCTTTGAAAGAAGCATGGAC
GGGAGCCATATTGGAGGAAGGTGCGAACAAAAATGAGGGCGGCGATGTTC
TTGAAGTCGGTCGTGACGAAGTACTCGTCCTCCTGCAGATCAACCATCAA
ATCAGCTTCTATACTGAGTATCGCATCCGCTTTGTCGGAGGATTTCGTTC
ACTTGGGTATCAAAAAGAGGTGATTGGCACGTACCCTGAAATTACGTGTA
ATCGCCTCCTGCTCTCTAATACACTCATCCTCGCCCTCTCTTCGTTACTC
CTGCTGCAACCGATCTCGCCCTTACAGATCGCCTAGCCATTGCCGAAGC
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Coding sequence (CDS) from alignment at chr20:768949..770497-

>NO20G02490.1 ID=NO20G02490.1|Name=NO20G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr20:768949..770497- (Nannochloropsis oceanica)
ATGAGTCAGTCGCGGCTCTCGGTGACACTGGACATGATCAAGTTACCGCA
GGAATTGGCGGGCATTCAGGTCCTGTTTGTCCGAGACGGACCTTATCGGG
ACGCAAGACAGCGAGTCGCTATGGGGGAGAGAGTGTCGGTGGGCCTTCAA
CTCCTCTCGGCAGCCAAGGCTCGCACTGTTCGACATGCAGCAAGCAAGCA
GCTCCAGCATGAGAAGAGGCCAGCAAAGGTAACTGCCTACGCGCACGATG
AGGCTGCACGGTCTTTCGGTGCAAATGTGATCCTGAAATTCAATGGGGAT
GGAAGCTCTAACTTGCAACGGTGCAGACTGAGGCGTTCAATCTGCCAACT
ACACATTGTGGGGCATGAGGTTGGAGGGCTTAGGGGGAAGGACAAGAAAA
AGAAGAAGAAGAGAAAAGAGGAAGATGAAGAAGAGGAAGAGGAGGATGGG
GAGGAGGAGGAGGAGAAGGAGGAGGATTATGATGGTGATGATGATGATGA
GGAGGAGGAGGAGGGCATGTTTCATTCCTGCACATGTTTTTCTCGGGAAA
AATCTGGCCTTACTGCAGGCCCGGGAACCAAGAGACGGAAGTTCCGCTGT
GATGTGGCTGACTCAAGTGGAAGGAGCGGGGTTTCTATGGCGCCTATACG
ATGCGCCACAGGGCCAATTGCAACTCCTTTGAAAGAAGCATGGACGGGAG
CCATATTGGAGGAAGGTGCGAACAAAAATGAGGGCGGCGATGTTCTTGAA
GTCGGTCGTGACGAAGTACTCGTCCTCCTGCAGATCAACCATCAAATCAG
CTTCTATACTGAGTATCGCATCCGCTTTGTCGGAGGATTTCGTTCACTTG
GGTATCAAAAAGAGGTGATTGGCACGTACCCTGAAATTACGTGTAATCGC
CTCCTGCTCTCTAATACACTCATCCTCGCCCTCTCTTCGTTACTCCTGCT
GCAACCGATCTCGCCCTTACAGATCGCCTAG
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Synonyms
Publications