NO20G02440, NO20G02440 (gene) Nannochloropsis oceanica

Overview
NameNO20G02440
Unique NameNO20G02440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5267
Alignment locationchr20:745588..750854 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:745588..750854 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO20G02440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02440.1NO20G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G02440.2NO20G02440.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|95732gene_6472Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02440.1NO20G02440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G02440.2NO20G02440.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02440 ID=NO20G02440|Name=NO20G02440|organism=Nannochloropsis oceanica|type=gene|length=5267bp
CGGATGTGACAAACACAATTGTCTTCGCCGTTATCGCGACGTGTTCCTGC
TCCTGTTCCTGTTCCTTCCATGTTGCATGTTGCCTTGATCCTGCTCGGGA
GTGCTGGCGTCTTCGCTTGGTTTGTTGACTAGTGTGGCTTGATGGGGCTC
ATGTGGTGCTGCACATGCATGCGTGCCAAACCTTTCTTGCTTTTGTGTCC
TTTTTTCCTTGCTTACCAACGGCCGGCTTCCATAAATTAGCTCACGCGTC
CGGCCCGCGTGGCCTGCTGCGTGCTGCAAATCCCCGCCCTGTACCACTTT
ACATTTTTAAGAAAAAGAGGCCAAAGCAAATATGCACGTAAAGGAGCAGT
CATTCTCCCTCCTTCACGTCCGCATTGTTGTGTCTGTCGAAAAAAGGAAA
AAAACTCCTCTTTCTCAGTACACCCATATAGCATCTTCGTCATCGTTTAT
CAATTCGACTCACATGCACAAATGCACAAATGCACAGTCGTATCACCAGG
ACATCGAAGAGGCAGCACTTATATCTGTGCCTGTCTATATATATATATTT
AAACGCGGCGACGTCTGGGCGGCAGTGTGTCTCCAGAACGGGGGGGGACA
GCAGCTCAGAAGCTGTGCGGCTGCTACACATACCTTTTTCGCAGGATAGC
GATAGCGGCACTTGACCCCAATTTTGGCTTGTAAATGCACAACACCATCG
ACCTTGAAAAGAGCCACAAGAGGAGCAGCAGCAGCAGCGACTAGCCGCAA
CTCCTATTTTTGCTTCAGCAGCCGTGTACATACATACATACACCGATTTT
GATTCTGAGACTCATgtacgcgtctcaaatgccctccctcccatcctctc
tcccttatttccttccttcttccctttcttcctccttccttcttctttct
ctgccttcccccccgctttcttttcccccttacccctgtttatcgtcaga
aggaacgtacaggtgccactaccgcccttcctcatccgacaccgagcccc
ctcccccaccctccctccctccttctctagATGAAGCATTCTCATGACCC
GTTCCTGATGGGCCACTTGCCCACTTCTCTTTCCACCTACAATTTTGATC
ACCTCCAGCAACTAGAAGgtagaccgggagggagggagggagggaggaag
ggagggagggagggagggagggagggagggcctacttcgaccatcagaaa
gtcctcatggtgctgatcctccctcccttcctctctccctcctccccttt
cactcaccagGCGGCGGCAGCATCACCTTTGCCTCTTCGTCTCCCTACCT
GCCCCCTCACCAGCAAATGAAGGAGGAGGGGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGAATGGACGCGGG
GCAGTATATAACACATTTTTGGCTATCCACAGAGACTACCGTCTGCATGA
GCTTCCATCTTTCCCTCCCTCCCTCCCTCTCAGTATTGGAGGGGGAGAGG
GAGGGGAGAGAAGCGAGCAGCTTTACTATCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCACTCCCCTTATCACCACCGTCA
AGAGCAGCTACAGCAGCAGTATGACAAACACCTCCACCACCATCCGCAGC
AGCACCAGCAGCAGCAGCTGTATCACCAGCACCATTACCAGCAGCAACGG
CAACAACACCAGCAGCACCAGCACCAGCACCAGCACCAGCAGTACGACAA
ACACCTCTTCTACCAGCAGCAGCAGCATGGTGTTCAGTACATCCCGTTGT
TGACAGAAGCTGGAGGAGAGAGAGCGGAGGACGAAATAGAAGAAAGAGGA
GAAGGAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACA
AGGGACACTCGAAGCCTCTTTTTCTCTGGATTCCAATGCGAGCTCAACCA
ATTATATATgtgagggagggagggagggagagaggaagcatggttccatc
aatgtcctcattcggtctcctccctccctcccaccctccctcccgccctc
cctcccgtagGCCCCCCCCCTCCTTCTGACGACGATTGCGAAAGAGGCGC
GTGCATCTCGGAGGAAGAGAGCGAACAGCAGCAGCAGCAGCAGCAGTACC
AGCAGCAGCAGTACCAGGTGGAGGAGgtaggaagggagggagggaggaag
ggaggagggagaggagggaagagggaggaggaaaggttaaggttagggtt
agctatgccctatgcctcgaaaaccttagcaataatttccatccatttct
tttctctgtcgcacgccctccctcgttccctccctcccttccccgccagG
ACGAGGACGAGCTCATCATAAACGACGAGGTGAACAGCACGAAAGCCTAT
CCTGCCCTCGTTCCCTCCCTCCCTCGTTCCCTCCCTCCCTCCGACATCGT
TTCCTTGGGCCACTCCAAGCGATCACGGAGGAGGGCACTTAAATCAATCC
CTCCCTCCCTCCCGCCCTCCTCCCCGCCCTCCCTCCCGCCGTCTCTCCCC
GCGCCGCAGACACGGCAGGGGGGCAAGGGAGGGAGGGAGGAAGGGAAGGA
GGGAGGGAGGGAGGAAGGGCGGCTGGAGGAGTTGTGGGGCATGACGTGGA
GGCGAGAGATCAGCAAGgtagggagggaagaaaggacggagggagagagg
gagggaggtagagaagaaggaaacatgttaaaatacacggctggcaacac
tgctcgccctgaccattccctcccttccctccctccctccctccctccct
ccctccctccctccctccctcccttcctccctttctagGAAAAGAAGTCG
ATTCTGGTATGTTCGCTCCCTTCCGAAGCTGCCTATGAATCCCTCATGCG
CCGTTTTGAGGGGGGCGGGGCCGAAGGCGAGATCAAGGAGgtacgccctg
acccttcccgccctccctcccttcctccctcccttacttgctcattttta
tgcttcatccctccctctctttctttcttcctttcttccttccttccctc
cctcccccctccttcccttcctcctcacctttccttccatggcattagct
gcatacggctaagggcgatcatggaatacatcccgttcctactcagccct
cccgccctccctccctccctccctccctccctccctccctctcagTCATT
CTCCTGGGTGACGGACCGAGGCCGGAAGCATTCCAAGGCCGCCCTCGGCC
GTATGCAGCGGATGCGATGGAAGgtaggtagggagggagggagggaggga
gggagggggggggggaggaagggagggaggtgtgaaagatacaagtcctt
tgcgggggaaagggaaggaagaaaggaaggagtaagggagggagggaggg
agggaggattcgtcgataaatgagtcaagcgtctcatctaccggcatcga
cctctaatagccctcttcccctccctccctccctccctccctccctccct
ccctccctccctccctccctccctccctccctccctccctccctccctcc
cagGACACGTACAACTGTTTCTATGGGCGGCGGCACACTAAGCGCCAGCC
TGAAGGGAGGGAGGGAGGGAGGAAGGGAGGGAAGAAGAGGGGGGGAGGCA
GGAAGGGAGGAAGAGCGAATGCGGAAGGCGAGGAAGAGGATGAAGAGGAG
GAGGAGGGTGCAGGGCGgtaagggtcaaggccagggagggagggagggag
ggagggagggagggagggagggagggagggaataagaaaaagccagattg
aatggcctgacaacaccgacattccccctccctcgctcccttcctccctc
cttccttccttccctccctctcttcctgcagGAGCGGGCGCATCTCTCAG
AAAGTGTCTTGCTCGGCGTCGCTCTCAGCCACCTGTATGCCTGACGGCCA
CGTGGAGCTACGgtaaggggaggggggagggagggaggaaggaaggaagg
aaggaaggaaagctcgaggcccaggttttatccacactaatcctccttcc
ttccctctctccctccatttctccatccatcattcacactaaccctccct
ccctccctccctccctccctccctccctccctccctccctccctagGTAT
TACGACACCCACGTTGTCCACCCTTCCCCCCTGGGTCTTATGGCGCCAGG
CCCAAAAAAAGACGTTTTTCTCCCCCTCCTCCCTCCTCCTCCTGCACTTC
TTCCTCCGCCTCCTCCGCCTCCTCCTCCTCCTCCTCCTCCGCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGCTTCCTGTG
CTTCCCTCCGTGGATGGAGGGAGGGAGGGAGGGAGGGAAAAAAGGAGGGG
AGCAGGGAAGGAAGGAGGGAGGGAGGGGGAGGAGAGGGTGGCACGGATGC
TGCCGGTGGTTAGATGGAAGTAAGAAAGCGAGAGAGGGAGGGAGGTGCGG
GTGCCGCTAATGATTTTGTAGTAGAAAAAGGAAGATAGAAGAGGGGAAGG
AAGAGAGGGAAGGAGGAAGGAAGATATGTACACGAATAGGAAAGAGAGAA
ACAGGCAATTTTGACCGCGAAAAAGTAAAAGTTAATATGGCGCGAAGGAA
ATAAGTTGAATAGGGCATAAAATAAGGAAGGAAGAGGGGGGGGAAAGGTA
GGCGATATATCCAGCATGGTGCCCCCCCTCAACCTCGCCGCTCCACAGAG
CAGGAGGGGAGGCAGGGAGGGAGGGAGGGCATCGGACTTACCTATCCCTT
GTGTCCGACGACCAAACACCCGTCCTTGTCGCCCAATTTTGATACAGACA
AAGAAGAGAGAGGGAGAGAGGACGGGCGGTGAAGAAGCAGCATAAAAGCT
ATCCATGCATGTAAGAAAACTGGAAGAGGAAGAAGAAGAGACGAAGGATG
AGGAGGAGCAGGGGTAGGAAAGGGAAGAGAAAAGGAAAGAAGAAAGAGAG
GAGGACGCGGAGAAGGAAGGAGAGAGACAAGGTGAAATGCATAGGCGAAT
AACAAAACAACTGTTAGGTGGCTCAGAAGGGGGCGAATAAATGCATGGGG
GCTCGTTTAAAAAAGGAGGGGGAAAAAAAAGGAGCGGATAACAAAAGGGG
GGTCGTCTTCTCCTTCTCCATCACACACACATACACGTGCAGATGATGCG
GGGACGAGGGATGTGCACTTTTGTGAAGAGTAATGCTCAAGGGGTAAAGT
AAATAATAAATTAGGGT
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protein sequence of NO20G02440.1

>NO20G02440.1-protein ID=NO20G02440.1-protein|Name=NO20G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=670bp
MKHSHDPFLMGHLPTSLSTYNFDHLQQLEGGGSITFASSSPYLPPHQQMK
EEGEEEEEEEEEEEEEEEEEEGNGRGAVYNTFLAIHRDYRLHELPSFPPS
LPLSIGGGEGGERSEQLYYQQQQQQQQQQQQQQQQHSPYHHRQEQLQQQY
DKHLHHHPQQHQQQQLYHQHHYQQQRQQHQQHQHQHQHQQYDKHLFYQQQ
QHGVQYIPLLTEAGGERAEDEIEERGEGEAAAAAAAAAAAAAQGTLEASF
SLDSNASSTNYICPPPPSDDDCERGACISEEESEQQQQQQQYQQQQYQVE
EDEDELIINDEVNSTKAYPALVPSLPRSLPPSDIVSLGHSKRSRRRALKS
IPPSLPPSSPPSLPPSLPAPQTRQGGKGGREEGKEGGREEGRLEELWGMT
WRREISKEKKSILVCSLPSEAAYESLMRRFEGGGAEGEIKESFSWVTDRG
RKHSKAALGRMQRMRWKDTYNCFYGRRHTKRQPEGREGGRKGGKKRGGGR
KGGRANAEGEEEDEEEEEGAGRSGRISQKVSCSASLSATCMPDGHVELRY
YDTHVVHPSPLGLMAPGPKKDVFLPLLPPPPALLPPPPPPPPPPPPPPPP
PPPPPPPPPPPPPRFLCFPPWMEGGREGGKKGGEQGRKEGGRGRRGWHGC
CRWLDGSKKAREGGRCGCR*
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protein sequence of NO20G02440.2

>NO20G02440.2-protein ID=NO20G02440.2-protein|Name=NO20G02440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=670bp
MKHSHDPFLMGHLPTSLSTYNFDHLQQLEGGGSITFASSSPYLPPHQQMK
EEGEEEEEEEEEEEEEEEEEEGNGRGAVYNTFLAIHRDYRLHELPSFPPS
LPLSIGGGEGGERSEQLYYQQQQQQQQQQQQQQQQHSPYHHRQEQLQQQY
DKHLHHHPQQHQQQQLYHQHHYQQQRQQHQQHQHQHQHQQYDKHLFYQQQ
QHGVQYIPLLTEAGGERAEDEIEERGEGEAAAAAAAAAAAAAQGTLEASF
SLDSNASSTNYICPPPPSDDDCERGACISEEESEQQQQQQQYQQQQYQVE
EDEDELIINDEVNSTKAYPALVPSLPRSLPPSDIVSLGHSKRSRRRALKS
IPPSLPPSSPPSLPPSLPAPQTRQGGKGGREEGKEGGREEGRLEELWGMT
WRREISKEKKSILVCSLPSEAAYESLMRRFEGGGAEGEIKESFSWVTDRG
RKHSKAALGRMQRMRWKDTYNCFYGRRHTKRQPEGREGGRKGGKKRGGGR
KGGRANAEGEEEDEEEEEGAGRSGRISQKVSCSASLSATCMPDGHVELRY
YDTHVVHPSPLGLMAPGPKKDVFLPLLPPPPALLPPPPPPPPPPPPPPPP
PPPPPPPPPPPPPRFLCFPPWMEGGREGGKKGGEQGRKEGGRGRRGWHGC
CRWLDGSKKAREGGRCGCR*
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Synonyms
Publications