NO20G02420, NO20G02420 (gene) Nannochloropsis oceanica

Overview
NameNO20G02420
Unique NameNO20G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2162
Alignment locationchr20:737307..739468 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:737307..739468 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G02420 vs. NCBI_GenBank
Match: EWM21987.1 (hypothetical protein Naga_101706g2 [Nannochloropsis gaditana])

HSP 1 Score: 79.0 bits (193), Expect = 2.900e-11
Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 0 
Query:    1 MGQTPSSSLPSSSASSPASFLAINAVAEGCCQRWSKVEMRGLMRRMKALGARSGKPTLIYRRDLETAVKETGLSGTTEAEIL 83
            MGQ  SS+   S A   ++   + AV +  C RW+K +++ LMR MKALGARSGKPTLIYR DLE A+K+TGL  T E EIL
Sbjct:    1 MGQNQSSA--PSQAEVSSALAVMEAVTQEDCPRWTKKKLKELMRAMKALGARSGKPTLIYRCDLEAALKKTGLQDTVEGEIL 80
The following BLAST results are available for this feature:
BLAST of NO20G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21987.12.900e-1154.88hypothetical protein Naga_101706g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002792NSK002792Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02420.1NO20G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|95572gene_6470Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101706g2gene8446Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02420.1NO20G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02420 ID=NO20G02420|Name=NO20G02420|organism=Nannochloropsis oceanica|type=gene|length=2162bp
TCCCTCGCTCCAGCACGCCTGTTGAGTTTGGTGGGCAAATCAAGGAAGTG
TGAATAGGCGTGAAAGGAGGAGGATTGATCAGTAACGAGATGAGCGGGTC
ATTGATTGCCACATCTACAGTGGCGACAGTAGCAGGCTTGTGCCGTTGCG
CTCTCCCTCATCAAGTAATCCTCACGTTCGCCTGCTCCCCTTTCACTTCA
CTTCGCTAAAACCGACAAACAACGTCGGCGCATTGGGCCGGCGAGTGAGC
ATTGGGGGATGGGTGTAAGGAGGCCGTGTCAGTTGTGCCTGTGTGTTTGT
GTCTGGACATCCTCGGCAAATTTACGACAAGAGTCATAATACTCAATCTT
CCCCCTCCCTCCCCTCTCGTCTTTCTTATCTGCAACGAAACCCTCACACA
GGAGGCAAGCATGGGTCAGACACCCTCTTCCTCCCTTCCCTCCTCCTCCG
CCTCCTCCCCCGCCTCCTTCCTCGCCATCAACGCCGTGGCCGAGGGATGT
TGCCAGCGATGGAGCAAGGTGGAAATGCGTGGCTTGATGCGGAGAATGAA
GGCATTAGGAGCCCGCTCGgtaagtaaggagaagaggaaaggaaaggaga
gcaaaaagaacaaggaagggtcgcgaacgcgtaaatgcaaaacggatttt
ttgcttatctctcctgaagtcctgcgctttctgcccagtgtctgctttgc
tattggtaatccttccgttccttcctccctccctccctcccttcatgcag
GGGAAGCCGACACTTATCTACCGACGCGACCTCGAGACGGCCGTAAAAGA
GACGGGGTTGAGCGGGACCACCGAGGCCGAGATTTTGGgtgcggcagaaa
caaggaggaagaggtgaaagaacgttgcctgatcttgctcctcatgcccg
cccccttcgtccctccctccctccctccctccctccctccctccctccct
ccctgtagACAAAGTCTACACTCTCCTCGACGACAAGGGCGAGGACCAAG
TGCCTTACCAGCAAATAATGATGAGCGTCGTTCTCCTTCTGCCCGGCGAC
GACGgtatgcctgcccttcctcccccccttcccttccctcctccctcccc
cctcctttcttccctcccgccctcatgtgctcccatcccatgaatttccc
ccttttaacccttaccctaacagagggcggcatggagcgaaaataccatg
agaaacgatgattttcacatgagcatccatccatcgtgaagaacagtcga
gccaataacaacctcaatttcattcttccctccctccctccatccctccc
tccctcccttcctccctccctctctcctccctcagTGGTAGACAAATTGT
CGTTTGCCCTTGAGCTTTACGAGGCTGGCCGACCCATTCAGAGGGAGGAG
GAGGCAGAGGAGGAAGAAGGGGAGGAGGGACCGCTTGGAACTACCCGGAG
GAGGAGGAATAAGCAGGAGGAGAACGACGAGGAAGGGAAGGAGGATGGGG
CACTGTTTTCACGGGCGGACGTGCGGGTGATGCTCAGGAGCATGAACATG
gtaagaaagagagggagggggggaagggcacggtacgggaggatgtgatg
gaaaaggcgcattaattgaaagtagtatgaaatcatcttcgccgtgatcc
ctcggaccaacgccctcccctccctctgtccctctctccctcctcagATG
GCCGCTTTCCTGGGCGACGAGCCTCTACCTGATGAAGAGCTAGACACCCT
CCTTTCTTCTGTCTTCCCTCTATCCTCCTCCCCTTCCCCCTGCCTTTCCT
CCTCCACCACCTCCTCCTCCACATCCCCAGGCAACCCTTTCGAGGAGGAG
GAAGAGAAAGAAGGGAGGGAGAAAGGGAGGGGGGGAAGGAAGGAGGAGGA
AGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGAGTGTGTCTACAAGACAG
CGAACGAAATTTTGACAGGTCTAAAGAAACACGCCTTTGTGAGAGGGACA
GCTGGGGCGGCGGTGAGCACCACCATCACTGCGTCAGGCGAGTGAGGAGG
AGCGAGAGAAGGAAAAAGGGGGGGAGGATAGGTGACAACTGTATGTGATG
GAAAATGAATAGAGTGATGACAGAAGTGAAATTTGACTTGTTATCCGCCT
TGTCTTTCAAAA
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protein sequence of NO20G02420.1

>NO20G02420.1-protein ID=NO20G02420.1-protein|Name=NO20G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MGQTPSSSLPSSSASSPASFLAINAVAEGCCQRWSKVEMRGLMRRMKALG
ARSGKPTLIYRRDLETAVKETGLSGTTEAEILDKVYTLLDDKGEDQVPYQ
QIMMSVVLLLPGDDVVDKLSFALELYEAGRPIQREEEAEEEEGEEGPLGT
TRRRRNKQEENDEEGKEDGALFSRADVRVMLRSMNMMAAFLGDEPLPDEE
LDTLLSSVFPLSSSPSPCLSSSTTSSSTSPGNPFEEEEEKEGREKGRGGR
KEEEEEEEEEEEEGECVYKTANEILTGLKKHAFVRGTAGAAVSTTITASG
E*
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Synonyms
Publications