NO20G02420.1, NO20G02420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02420.1
Unique NameNO20G02420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1433
Alignment locationchr20:737307..739468 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:737307..739468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02420.1 vs.
Match: EWM21987.1 (hypothetical protein Naga_101706g2 [Nannochloropsis gaditana])

HSP 1 Score: 79.0 bits (193), Expect = 2.900e-11
Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 0 
Query:    1 MGQTPSSSLPSSSASSPASFLAINAVAEGCCQRWSKVEMRGLMRRMKALGARSGKPTLIYRRDLETAVKETGLSGTTEAEIL 83
            MGQ  SS+   +  SS  +   + AV +  C RW+K +++ LMR MKALGARSGKPTLIYR DLE A+K+TGL  T E EIL
Sbjct:    1 MGQNQSSAPSQAEVSS--ALAVMEAVTQEDCPRWTKKKLKELMRAMKALGARSGKPTLIYRCDLEAALKKTGLQDTVEGEIL 80
The following BLAST results are available for this feature:
BLAST of NO20G02420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21987.12.900e-1154.88hypothetical protein Naga_101706g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02420NO20G02420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02420.1NO20G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02420.1.cds1NO20G02420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02420.1.cds2NO20G02420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02420.1.cds3NO20G02420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02420.1.cds4NO20G02420.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02420.1.cds5NO20G02420.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02420.1 ID=NO20G02420.1|Name=NO20G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1433bp
TCCCTCGCTCCAGCACGCCTGTTGAGTTTGGTGGGCAAATCAAGGAAGTG
TGAATAGGCGTGAAAGGAGGAGGATTGATCAGTAACGAGATGAGCGGGTC
ATTGATTGCCACATCTACAGTGGCGACAGTAGCAGGCTTGTGCCGTTGCG
CTCTCCCTCATCAAGTAATCCTCACGTTCGCCTGCTCCCCTTTCACTTCA
CTTCGCTAAAACCGACAAACAACGTCGGCGCATTGGGCCGGCGAGTGAGC
ATTGGGGGATGGGTGTAAGGAGGCCGTGTCAGTTGTGCCTGTGTGTTTGT
GTCTGGACATCCTCGGCAAATTTACGACAAGAGTCATAATACTCAATCTT
CCCCCTCCCTCCCCTCTCGTCTTTCTTATCTGCAACGAAACCCTCACACA
GGAGGCAAGCATGGGTCAGACACCCTCTTCCTCCCTTCCCTCCTCCTCCG
CCTCCTCCCCCGCCTCCTTCCTCGCCATCAACGCCGTGGCCGAGGGATGT
TGCCAGCGATGGAGCAAGGTGGAAATGCGTGGCTTGATGCGGAGAATGAA
GGCATTAGGAGCCCGCTCGGGGAAGCCGACACTTATCTACCGACGCGACC
TCGAGACGGCCGTAAAAGAGACGGGGTTGAGCGGGACCACCGAGGCCGAG
ATTTTGGACAAAGTCTACACTCTCCTCGACGACAAGGGCGAGGACCAAGT
GCCTTACCAGCAAATAATGATGAGCGTCGTTCTCCTTCTGCCCGGCGACG
ACGTGGTAGACAAATTGTCGTTTGCCCTTGAGCTTTACGAGGCTGGCCGA
CCCATTCAGAGGGAGGAGGAGGCAGAGGAGGAAGAAGGGGAGGAGGGACC
GCTTGGAACTACCCGGAGGAGGAGGAATAAGCAGGAGGAGAACGACGAGG
AAGGGAAGGAGGATGGGGCACTGTTTTCACGGGCGGACGTGCGGGTGATG
CTCAGGAGCATGAACATGATGGCCGCTTTCCTGGGCGACGAGCCTCTACC
TGATGAAGAGCTAGACACCCTCCTTTCTTCTGTCTTCCCTCTATCCTCCT
CCCCTTCCCCCTGCCTTTCCTCCTCCACCACCTCCTCCTCCACATCCCCA
GGCAACCCTTTCGAGGAGGAGGAAGAGAAAGAAGGGAGGGAGAAAGGGAG
GGGGGGAAGGAAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGG
GGGAGTGTGTCTACAAGACAGCGAACGAAATTTTGACAGGTCTAAAGAAA
CACGCCTTTGTGAGAGGGACAGCTGGGGCGGCGGTGAGCACCACCATCAC
TGCGTCAGGCGAGTGAGGAGGAGCGAGAGAAGGAAAAAGGGGGGGAGGAT
AGGTGACAACTGTATGTGATGGAAAATGAATAGAGTGATGACAGAAGTGA
AATTTGACTTGTTATCCGCCTTGTCTTTCAAAA
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protein sequence of NO20G02420.1

>NO20G02420.1-protein ID=NO20G02420.1-protein|Name=NO20G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MGQTPSSSLPSSSASSPASFLAINAVAEGCCQRWSKVEMRGLMRRMKALG
ARSGKPTLIYRRDLETAVKETGLSGTTEAEILDKVYTLLDDKGEDQVPYQ
QIMMSVVLLLPGDDVVDKLSFALELYEAGRPIQREEEAEEEEGEEGPLGT
TRRRRNKQEENDEEGKEDGALFSRADVRVMLRSMNMMAAFLGDEPLPDEE
LDTLLSSVFPLSSSPSPCLSSSTTSSSTSPGNPFEEEEEKEGREKGRGGR
KEEEEEEEEEEEEGECVYKTANEILTGLKKHAFVRGTAGAAVSTTITASG
E*
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mRNA from alignment at chr20:737307..739468+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02420.1 ID=NO20G02420.1|Name=NO20G02420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2162bp|location=Sequence derived from alignment at chr20:737307..739468+ (Nannochloropsis oceanica)
TCCCTCGCTCCAGCACGCCTGTTGAGTTTGGTGGGCAAATCAAGGAAGTG
TGAATAGGCGTGAAAGGAGGAGGATTGATCAGTAACGAGATGAGCGGGTC
ATTGATTGCCACATCTACAGTGGCGACAGTAGCAGGCTTGTGCCGTTGCG
CTCTCCCTCATCAAGTAATCCTCACGTTCGCCTGCTCCCCTTTCACTTCA
CTTCGCTAAAACCGACAAACAACGTCGGCGCATTGGGCCGGCGAGTGAGC
ATTGGGGGATGGGTGTAAGGAGGCCGTGTCAGTTGTGCCTGTGTGTTTGT
GTCTGGACATCCTCGGCAAATTTACGACAAGAGTCATAATACTCAATCTT
CCCCCTCCCTCCCCTCTCGTCTTTCTTATCTGCAACGAAACCCTCACACA
GGAGGCAAGCATGGGTCAGACACCCTCTTCCTCCCTTCCCTCCTCCTCCG
CCTCCTCCCCCGCCTCCTTCCTCGCCATCAACGCCGTGGCCGAGGGATGT
TGCCAGCGATGGAGCAAGGTGGAAATGCGTGGCTTGATGCGGAGAATGAA
GGCATTAGGAGCCCGCTCGGTAAGTAAGGAGAAGAGGAAAGGAAAGGAGA
GCAAAAAGAACAAGGAAGGGTCGCGAACGCGTAAATGCAAAACGGATTTT
TTGCTTATCTCTCCTGAAGTCCTGCGCTTTCTGCCCAGTGTCTGCTTTGC
TATTGGTAATCCTTCCGTTCCTTCCTCCCTCCCTCCCTCCCTTCATGCAG
GGGAAGCCGACACTTATCTACCGACGCGACCTCGAGACGGCCGTAAAAGA
GACGGGGTTGAGCGGGACCACCGAGGCCGAGATTTTGGGTGCGGCAGAAA
CAAGGAGGAAGAGGTGAAAGAACGTTGCCTGATCTTGCTCCTCATGCCCG
CCCCCTTCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTGTAGACAAAGTCTACACTCTCCTCGACGACAAGGGCGAGGACCAAG
TGCCTTACCAGCAAATAATGATGAGCGTCGTTCTCCTTCTGCCCGGCGAC
GACGGTATGCCTGCCCTTCCTCCCCCCCTTCCCTTCCCTCCTCCCTCCCC
CCTCCTTTCTTCCCTCCCGCCCTCATGTGCTCCCATCCCATGAATTTCCC
CCTTTTAACCCTTACCCTAACAGAGGGCGGCATGGAGCGAAAATACCATG
AGAAACGATGATTTTCACATGAGCATCCATCCATCGTGAAGAACAGTCGA
GCCAATAACAACCTCAATTTCATTCTTCCCTCCCTCCCTCCATCCCTCCC
TCCCTCCCTTCCTCCCTCCCTCTCTCCTCCCTCAGTGGTAGACAAATTGT
CGTTTGCCCTTGAGCTTTACGAGGCTGGCCGACCCATTCAGAGGGAGGAG
GAGGCAGAGGAGGAAGAAGGGGAGGAGGGACCGCTTGGAACTACCCGGAG
GAGGAGGAATAAGCAGGAGGAGAACGACGAGGAAGGGAAGGAGGATGGGG
CACTGTTTTCACGGGCGGACGTGCGGGTGATGCTCAGGAGCATGAACATG
GTAAGAAAGAGAGGGAGGGGGGGAAGGGCACGGTACGGGAGGATGTGATG
GAAAAGGCGCATTAATTGAAAGTAGTATGAAATCATCTTCGCCGTGATCC
CTCGGACCAACGCCCTCCCCTCCCTCTGTCCCTCTCTCCCTCCTCAGATG
GCCGCTTTCCTGGGCGACGAGCCTCTACCTGATGAAGAGCTAGACACCCT
CCTTTCTTCTGTCTTCCCTCTATCCTCCTCCCCTTCCCCCTGCCTTTCCT
CCTCCACCACCTCCTCCTCCACATCCCCAGGCAACCCTTTCGAGGAGGAG
GAAGAGAAAGAAGGGAGGGAGAAAGGGAGGGGGGGAAGGAAGGAGGAGGA
AGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGAGTGTGTCTACAAGACAG
CGAACGAAATTTTGACAGGTCTAAAGAAACACGCCTTTGTGAGAGGGACA
GCTGGGGCGGCGGTGAGCACCACCATCACTGCGTCAGGCGAGTGAGGAGG
AGCGAGAGAAGGAAAAAGGGGGGGAGGATAGGTGACAACTGTATGTGATG
GAAAATGAATAGAGTGATGACAGAAGTGAAATTTGACTTGTTATCCGCCT
TGTCTTTCAAAA
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Coding sequence (CDS) from alignment at chr20:737307..739468+

>NO20G02420.1 ID=NO20G02420.1|Name=NO20G02420.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr20:737307..739468+ (Nannochloropsis oceanica)
ATGGGTCAGACACCCTCTTCCTCCCTTCCCTCCTCCTCCGCCTCCTCCCC
CGCCTCCTTCCTCGCCATCAACGCCGTGGCCGAGGGATGTTGCCAGCGAT
GGAGCAAGGTGGAAATGCGTGGCTTGATGCGGAGAATGAAGGCATTAGGA
GCCCGCTCGGGGAAGCCGACACTTATCTACCGACGCGACCTCGAGACGGC
CGTAAAAGAGACGGGGTTGAGCGGGACCACCGAGGCCGAGATTTTGGACA
AAGTCTACACTCTCCTCGACGACAAGGGCGAGGACCAAGTGCCTTACCAG
CAAATAATGATGAGCGTCGTTCTCCTTCTGCCCGGCGACGACGTGGTAGA
CAAATTGTCGTTTGCCCTTGAGCTTTACGAGGCTGGCCGACCCATTCAGA
GGGAGGAGGAGGCAGAGGAGGAAGAAGGGGAGGAGGGACCGCTTGGAACT
ACCCGGAGGAGGAGGAATAAGCAGGAGGAGAACGACGAGGAAGGGAAGGA
GGATGGGGCACTGTTTTCACGGGCGGACGTGCGGGTGATGCTCAGGAGCA
TGAACATGATGGCCGCTTTCCTGGGCGACGAGCCTCTACCTGATGAAGAG
CTAGACACCCTCCTTTCTTCTGTCTTCCCTCTATCCTCCTCCCCTTCCCC
CTGCCTTTCCTCCTCCACCACCTCCTCCTCCACATCCCCAGGCAACCCTT
TCGAGGAGGAGGAAGAGAAAGAAGGGAGGGAGAAAGGGAGGGGGGGAAGG
AAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGAGTGTGT
CTACAAGACAGCGAACGAAATTTTGACAGGTCTAAAGAAACACGCCTTTG
TGAGAGGGACAGCTGGGGCGGCGGTGAGCACCACCATCACTGCGTCAGGC
GAGTGA
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Synonyms
Publications