NO20G02350, NO20G02350 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G02350 vs. NCBI_GenBank
Match: CEM35152.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 211.1 bits (536), Expect = 9.300e-51 Identity = 114/290 (39.31%), Postives = 152/290 (52.41%), Query Frame = 0 Query: 283 IDYGCLVGRCGKELGMALVDFRGMHELTCLVTCGPSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVPQRVEEE-----------------NKLPDPS------LLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQALVELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPGSVSSPPPSLR---------PSIVFDVSYQVSHDQ-GKEGPFLQTFTRNLQQHFTQDSLYPGLLHARAQGYLQQEDDWYILAADPERYMFVWYEGCNKAWCGFTGGVVFSRTP 540 +DY L+ +CG L A+ D RG+HE CL+ CG D+ACQMRCGD+Y+ DVL+ FH CAIS+HQ +PQR++ +LP S +V +L +L GEW++ +G+NP+ DCFPCQHH A V V +P P +R + FD+SY+V G + PF FTR+++Q F PG+L + YL Q DDWYIL+ADPERY V+Y GCN AWCG+ GGVV+SRTP Sbjct: 31 VDYYGLLTKCGGPLLRAMSDRRGLHEFVCLMKCGMDDIACQMRCGDLYEEDVLKEFHICAISEHQVIPQRIDRHAAEGRVRDDQGKSEQVARQLPGASEVDRRIPVVAALEPAALQGEWWVVYGLNPVFDCFPCQHHTASV-----------------------VKSAPGKTSEAVRSDDGAPHPIMRWKNGAWTAANGVRFDISYRVPVPHGGDKQPF---FTRHVEQVFFPHRSSPGVLRSHDPTYLHQSDDWYILSADPERYFIVYYMGCNDAWCGYDGGVVYSRTP 294
BLAST of NO20G02350 vs. NCBI_GenBank
Match: XP_019198311.1 (PREDICTED: violaxanthin de-epoxidase, chloroplastic [Ipomoea nil]) HSP 1 Score: 152.1 bits (383), Expect = 5.100e-33 Identity = 84/259 (32.43%), Postives = 129/259 (49.81%), Query Frame = 0 Query: 287 CLVGRCGKELGMALVDFRGMHELTCLVTCG--PSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVPQRVE-EENKLPDPSLLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQALVELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPGSVSSPPPSLRPSIVFDVSYQVSHDQGKEGPFLQTFTRNLQQHFTQDSLYPGLLHARAQGYLQQEDDWYILAA----DPERYMFVWYEGCNKAWCGFTGGVVFSRT 539 CL+ C EL + + + CL TC P + CQ++CGD+++ V+ F+ CA+S+ +CVP++ + E +PDPS+LV S + NG+WFIT G+NP D F CQ H+ VE +V ++S+++ + +G F FTR+ Q F QD YPG+L+ YL EDDWYIL++ P+ Y+FV+Y G N AW G+ G V+++R+ Sbjct: 145 CLLKECRLELAKCIANPSCAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGEFPVPDPSVLVKSFDMKDFNGKWFITRGLNPTFDTFDCQLHEFHVE---------------------------------------------DNKLVGNISWRI---RTPDGAF---FTRSALQKFVQDPQYPGILYNHGNEYLHYEDDWYILSSKVENTPDDYIFVYYRGKNDAWDGYGGAVLYTRS 352
BLAST of NO20G02350 vs. NCBI_GenBank
Match: KZV37303.1 (hypothetical protein F511_16452 [Dorcoceras hygrometricum]) HSP 1 Score: 147.1 bits (370), Expect = 1.600e-31 Identity = 79/260 (30.38%), Postives = 128/260 (49.23%), Query Frame = 0 Query: 287 CLVGRCGKELGMALVDFRGMHELTCLVTCG--PSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVPQRVE-EENKLPDPSLLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQALVELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPGSVSSPPPSLRPSIVFDVSYQVSHDQGKEGPFLQTFTRNLQQHFTQDSLYPGLLHARAQGYLQQEDDWYILAA----DPERYMFVWYEGCNKAWCGFTGGVVFSRTP 540 CL+ C EL + + + CL TC P + CQ++CGD+++ V+ F+ CA+S+ +CVP++ + E PDP++LV + ++ NG+WFIT G+NP D F CQ H+ E +V ++S+++ + P FTR+ Q F QD YPG+L+ +L +DDWYIL++ +P+ Y+FV+Y G N AW G+ G V+++R+P Sbjct: 127 CLLKECKLELAKCIANPSCAANIACLQTCNNRPDETECQIKCGDLFENSVVDEFNDCAVSRKKCVPRKSDVGEFPAPDPAVLVQNFNINDFNGKWFITSGLNPTFDTFDCQLHEFHTE---------------------------------------------SNKLVGNLSWRI------KTPDTGFFTRSAVQEFVQDPKYPGILYNHDNEFLHYQDDWYILSSKVLNEPDDYIFVYYRGRNDAWDGYGGAVLYTRSP 335
BLAST of NO20G02350 vs. NCBI_GenBank
Match: ANT70525.1 (violaxanthin de-epoxidase [Nannochloropsis oceanica]) HSP 1 Score: 146.4 bits (368), Expect = 2.800e-31 Identity = 79/258 (30.62%), Postives = 127/258 (49.22%), Query Frame = 0 Query: 287 CLVGRCGKELGMALVDFRGMHELTCLVTCG--PSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVPQRVEEENKLPDP--SLLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQALVELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPGSVSSPPPSLRPSIVFDVSYQVSHDQGKEGPFLQTFTRNLQQHFTQDSLYPGLLHARAQGYLQQEDDWYILAADPERYMFVWYEGCNKAWCGFTGGVVFSRTPS 541 CL+ C EL ++D + + + CL TC ++ CQ+ CGD+++ +V+ F+ CA+S+ QCVP R E++ P P S LVPS + S G+W+I+ G+NP+ D F CQ H V+ + ++++++ G + FTR+ Q F QD +PG L+ YL +DDWYIL +P++++ ++Y G N AW G+ GGVV++R PS Sbjct: 115 CLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVP-RKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQ---------------------------------------------GDKLYGKLNWRITEPDG------EFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYILDHEPDQFIAIFYRGQNDAWTGYGGGVVYTRGPS 320
BLAST of NO20G02350 vs. NCBI_GenBank
Match: XP_009767570.1 (PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana sylvestris] >XP_009767571.1 PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana sylvestris] >XP_016456547.1 PREDICTED: violaxanthin de-epoxidase, chloroplastic-like [Nicotiana tabacum] >XP_016456554.1 PREDICTED: violaxanthin de-epoxidase, chloroplastic-like [Nicotiana tabacum]) HSP 1 Score: 146.0 bits (367), Expect = 3.700e-31 Identity = 80/259 (30.89%), Postives = 128/259 (49.42%), Query Frame = 0 Query: 287 CLVGRCGKELGMALVDFRGMHELTCLVTCG--PSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVPQRVE-EENKLPDPSLLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQALVELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPGSVSSPPPSLRPSIVFDVSYQVSHDQGKEGPFLQTFTRNLQQHFTQDSLYPGLLHARAQGYLQQEDDWYILAA----DPERYMFVWYEGCNKAWCGFTGGVVFSRT 539 CL+ C EL + + + CL TC P + CQ++CGD+++ V+ F+ CA+S+ +CVP++ + + +PDPS+LV + +G+WFIT G+NP D F CQ H+ E +V ++S+++ + +G F FTR+ Q F QD YPG+L+ YL +DDWYIL++ PE Y+FV+Y+G N AW G+ G V+++R+ Sbjct: 143 CLLKECRLELAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGDFPVPDPSVLVQKFDMKDFSGKWFITRGLNPTFDAFDCQLHEFHTE---------------------------------------------ENKLVGNLSWRI---RTPDGGF---FTRSAVQKFVQDPKYPGILYNHDNEYLHYQDDWYILSSKVENSPEDYIFVYYKGRNDAWDGYGGSVLYTRS 350
BLAST of NO20G02350 vs. NCBI_GenBank
Match: XP_010247237.1 (PREDICTED: violaxanthin de-epoxidase, chloroplastic isoform X1 [Nelumbo nucifera]) HSP 1 Score: 146.0 bits (367), Expect = 3.700e-31 Identity = 81/260 (31.15%), Postives = 131/260 (50.38%), Query Frame = 0 Query: 286 GCLVGRCGKELGMALVDFRGMHELTCLVTCG--PSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVPQRVE-EENKLPDPSLLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQALVELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPGSVSSPPPSLRPSIVFDVSYQVSHDQGKEGPFLQTFTRNLQQHFTQDSLYPGLLHARAQGYLQQEDDWYILAA----DPERYMFVWYEGCNKAWCGFTGGVVFSRT 539 GCL+ C EL + + + CL TC P + CQ++CGD+++ +V+ F+ CA+S+ +CVP++ + E +PDP+ LV S ++ +G+W+IT G+NP D F CQ H+ +E +V ++S+++ + +G F FTR+ Q F QDS PG+L+ YL +DDWYIL++ P+ Y+FV+Y G N AW G+ G VV++R+ Sbjct: 149 GCLLKECRVELAKCIANPSCAANIACLQTCNNRPDETECQIKCGDLFENNVVDEFNECAVSRKKCVPRKSDVGEFPIPDPAALVKSFNIADFSGKWYITSGLNPTFDTFDCQLHEFHME---------------------------------------------SNKLVGNLSWRI---RTPDGGF---FTRSTVQRFVQDSNQPGVLYNHDNEYLHYQDDWYILSSRVENRPDDYIFVYYRGRNDAWDGYGGAVVYTRS 357
BLAST of NO20G02350 vs. NCBI_GenBank
Match: XP_010247238.1 (PREDICTED: violaxanthin de-epoxidase, chloroplastic isoform X2 [Nelumbo nucifera]) HSP 1 Score: 146.0 bits (367), Expect = 3.700e-31 Identity = 81/260 (31.15%), Postives = 131/260 (50.38%), Query Frame = 0 Query: 286 GCLVGRCGKELGMALVDFRGMHELTCLVTCG--PSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVPQRVE-EENKLPDPSLLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQALVELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPGSVSSPPPSLRPSIVFDVSYQVSHDQGKEGPFLQTFTRNLQQHFTQDSLYPGLLHARAQGYLQQEDDWYILAA----DPERYMFVWYEGCNKAWCGFTGGVVFSRT 539 GCL+ C EL + + + CL TC P + CQ++CGD+++ +V+ F+ CA+S+ +CVP++ + E +PDP+ LV S ++ +G+W+IT G+NP D F CQ H+ +E +V ++S+++ + +G F FTR+ Q F QDS PG+L+ YL +DDWYIL++ P+ Y+FV+Y G N AW G+ G VV++R+ Sbjct: 70 GCLLKECRVELAKCIANPSCAANIACLQTCNNRPDETECQIKCGDLFENNVVDEFNECAVSRKKCVPRKSDVGEFPIPDPAALVKSFNIADFSGKWYITSGLNPTFDTFDCQLHEFHME---------------------------------------------SNKLVGNLSWRI---RTPDGGF---FTRSTVQRFVQDSNQPGVLYNHDNEYLHYQDDWYILSSRVENRPDDYIFVYYRGRNDAWDGYGGAVVYTRS 278
BLAST of NO20G02350 vs. NCBI_GenBank
Match: XP_019231506.1 (PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana attenuata] >XP_019231507.1 PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana attenuata] >OIT28698.1 violaxanthin de-epoxidase, chloroplastic [Nicotiana attenuata]) HSP 1 Score: 146.0 bits (367), Expect = 3.700e-31 Identity = 80/259 (30.89%), Postives = 128/259 (49.42%), Query Frame = 0 Query: 287 CLVGRCGKELGMALVDFRGMHELTCLVTCG--PSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVPQRVE-EENKLPDPSLLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQALVELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPGSVSSPPPSLRPSIVFDVSYQVSHDQGKEGPFLQTFTRNLQQHFTQDSLYPGLLHARAQGYLQQEDDWYILAA----DPERYMFVWYEGCNKAWCGFTGGVVFSRT 539 CL+ C EL + + + CL TC P + CQ++CGD+++ V+ F+ CA+S+ +CVP++ + + +PDPS+LV + +G+WFIT G+NP D F CQ H+ E +V ++S+++ + +G F FTR+ Q F QD YPG+L+ YL +DDWYIL++ PE Y+FV+Y+G N AW G+ G V+++R+ Sbjct: 143 CLLKECRLELAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGDFPVPDPSVLVQKFDMKDFSGKWFITRGLNPTFDAFDCQLHEFHTE---------------------------------------------ENKLVGNLSWRI---RTPDGGF---FTRSAVQKFVQDPKYPGILYNHDNEYLHYQDDWYILSSKVENSPEDYIFVYYKGRNDAWDGYGGAVLYTRS 350
BLAST of NO20G02350 vs. NCBI_GenBank
Match: XP_021623226.1 (violaxanthin de-epoxidase, chloroplastic isoform X1 [Manihot esculenta] >OAY41983.1 hypothetical protein MANES_09G144600 [Manihot esculenta]) HSP 1 Score: 145.6 bits (366), Expect = 4.800e-31 Identity = 80/259 (30.89%), Postives = 126/259 (48.65%), Query Frame = 0 Query: 287 CLVGRCGKELGMALVDFRGMHELTCLVTCG--PSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVPQRVE-EENKLPDPSLLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQALVELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPGSVSSPPPSLRPSIVFDVSYQVSHDQGKEGPFLQTFTRNLQQHFTQDSLYPGLLHARAQGYLQQEDDWYILAADPER----YMFVWYEGCNKAWCGFTGGVVFSRT 539 CL+ C EL + + + CL TC P + CQ++CGD+++ V+ F+ CA+S+ +CVP++ + E +PDP++LV S ++ NG+W+IT G+NP D F CQ H+ VE +V ++S+++ P FTR+ Q F QD + PG+L+ YL +DDWYIL++ E Y+FV+Y G N AW G+ G VV++R+ Sbjct: 148 CLLKECRLELAKCIANPACAANIACLQTCNNRPDETECQIKCGDLFENTVVDEFNECAVSRKKCVPKKSDVGEFPVPDPAVLVKSFNIADFNGKWYITRGLNPTFDTFDCQLHEFHVE---------------------------------------------SNKLVGNISWRI------RTPDSGFFTRSTVQRFVQDPMQPGILYNHDNEYLHYQDDWYILSSKVENKSDDYIFVYYRGRNDAWDGYGGAVVYTRS 355
BLAST of NO20G02350 vs. NCBI_GenBank
Match: XP_021623227.1 (violaxanthin de-epoxidase, chloroplastic isoform X2 [Manihot esculenta]) HSP 1 Score: 145.6 bits (366), Expect = 4.800e-31 Identity = 80/259 (30.89%), Postives = 126/259 (48.65%), Query Frame = 0 Query: 287 CLVGRCGKELGMALVDFRGMHELTCLVTCG--PSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVPQRVE-EENKLPDPSLLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQALVELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPGSVSSPPPSLRPSIVFDVSYQVSHDQGKEGPFLQTFTRNLQQHFTQDSLYPGLLHARAQGYLQQEDDWYILAADPER----YMFVWYEGCNKAWCGFTGGVVFSRT 539 CL+ C EL + + + CL TC P + CQ++CGD+++ V+ F+ CA+S+ +CVP++ + E +PDP++LV S ++ NG+W+IT G+NP D F CQ H+ VE +V ++S+++ P FTR+ Q F QD + PG+L+ YL +DDWYIL++ E Y+FV+Y G N AW G+ G VV++R+ Sbjct: 142 CLLKECRLELAKCIANPACAANIACLQTCNNRPDETECQIKCGDLFENTVVDEFNECAVSRKKCVPKKSDVGEFPVPDPAVLVKSFNIADFNGKWYITRGLNPTFDTFDCQLHEFHVE---------------------------------------------SNKLVGNISWRI------RTPDSGFFTRSTVQRFVQDPMQPGILYNHDNEYLHYQDDWYILSSKVENKSDDYIFVYYRGRNDAWDGYGGAVVYTRS 349 The following BLAST results are available for this feature:
BLAST of NO20G02350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G02350 ID=NO20G02350|Name=NO20G02350|organism=Nannochloropsis oceanica|type=gene|length=3400bpback to top protein sequence of NO20G02350.1 >NO20G02350.1-protein ID=NO20G02350.1-protein|Name=NO20G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=577bpback to top Synonyms
Publications
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