NO20G02350.1, NO20G02350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02350.1
Unique NameNO20G02350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2108
Alignment locationchr20:707259..710658 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:707259..710658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02350.1 vs.
Match: CEM35152.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 228.4 bits (581), Expect = 5.600e-56
Identity = 126/322 (39.13%), Postives = 174/322 (54.04%), Query Frame = 0 
Query:  280 KTGIDYGCLVGRCGKELGMALVDFRGMHELTCLVTCGPSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVPQRVEEE-----------------NKLPDPS------LLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQA-LVELPPSSPILLHSSSTTKQQQSHQPLSSQQEGGKGVPGSVSSPPPSLRPSIVFDVSYQVSHDQ-GKEGPFLQTFTRNLQQHFTQDSLYPGLLHARAQGYLQQEDDWYILAADPERYMFVWYEGCNKAWCGFTGGVVFSRTPSLPPSLYPSLEETARKVGVKGGIEGMCKVDNTQCNLK 577
            ++ +DY  L+ +CG  L  A+ D RG+HE  CL+ CG  D+ACQMRCGD+Y+ DVL+ FH CAIS+HQ +PQR++                    +LP  S       +V +L   +L GEW++ +G+NP+ DCFPCQHH A +V+  P       S +      +  P+   + G       V            FD+SY+V     G + PF   FTR+++Q F      PG+L +    YL Q DDWYIL+ADPERY  V+Y GCN AWCG+ GGVV+SRTP    +    + E  R  G+   I  MC VDN  C+L+
Sbjct:   28 RSSVDYYGLLTKCGGPLLRAMSDRRGLHEFVCLMKCGMDDIACQMRCGDLYEEDVLKEFHICAISEHQVIPQRIDRHAAEGRVRDDQGKSEQVARQLPGASEVDRRIPVVAALEPAALQGEWWVVYGLNPVFDCFPCQHHTASVVKSAPGKT----SEAVRSDDGAPHPIMRWKNGAWTAANGVR-----------FDISYRVPVPHGGDKQPF---FTRHVEQVFFPHRSSPGVLRSHDPTYLHQSDDWYILSADPERYFIVYYMGCNDAWCGYDGGVVYSRTPEPSQATIDDVREALRCAGL--SIVSMCPVDNA-CSLQ 328
The following BLAST results are available for this feature:
BLAST of NO20G02350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CEM35152.15.600e-5639.13unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02350NO20G02350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02350.1NO20G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02350.1.cds1NO20G02350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02350.1.cds2NO20G02350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02350.1.cds3NO20G02350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02350.1.cds4NO20G02350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02350.1.cds5NO20G02350.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02350.1.cds6NO20G02350.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02350.1.cds7NO20G02350.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02350.1 ID=NO20G02350.1|Name=NO20G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2108bp
CACAGGCACACAAGCGTGCAGGCAACATGTGTGCAGGGACAAGGGTAAAG
GTGGCGAGCGTCTTTTCCCTTCCTCCCTCTTTAGCAGTATCAGCACCACC
ACCATCCTCCTTCTCCTCCTCAACGGGATTGGACACCACGGCCAGCAGCT
TTTCGCCCTCTTCCACAAGGCAAATTAAACCACGGAGGGCGCGCAAGCAG
CACAAAAATCACACACTTGTCCTAGCAACGGTGGCAGCACTCGTTGGAGG
GAGAGATAGAGGCGTCGATGGCGCCTTTATTGGAGTAGGAAGTGGCGTGG
TGTGTGGGGGGAGGAGACGAGGAGGGGAGGAGCTAGGTCCATGGCAGTCA
GCCACGCCTACCTCTCTCAATGACGATGGTGGGTCTGCCGAAATATGCCT
AAGCACGACGACAAGCAAGTGGCGGAGACGAGGAAGGATGGCCACGGCAG
TGGCATCATCATCACCACCACCACGATCTTCTTGTTCCTCCTCCATTCGG
CCAGATTCGGCTACCGCCACCCCGTCTTTTTCATCGTCATCATCCTCCTC
CTCCCGTCCCTCCTCATCTCCCTTTCCTTCCTCCTCCACGTCCTCCTGTT
GGGCCTGGCCACTAATCCTTCCCCCTCTCTCCCTCCCCTCCCTCCCTCGC
CGGCTTCTCCCCCTCCTTGCCGCCTATCTCCCCTCCTTCCTCGCTCCCTC
CTTCCCTTTCTCCTTCTCATTATCCTCCTCCTCCTTTTCCTCCTCCATTG
TTGCTGCTGCTGCCGGTGGAGGTGGAGGTGGTGGTGGAGGACAGGAGCGA
GAGGCCGTGAGTCTAGAATATCTCCATCGTCGAAGCGGGAGGGAGGGAGG
GAGGGCGGGAGGGAAGACGGGCATCGATTACGGCTGCCTGGTAGGTCGTT
GTGGGAAGGAGCTTGGGATGGCATTGGTGGATTTCCGGGGGATGCATGAA
TTGACTTGCCTCGTAACATGCGGTCCTTCCGACTTGGCCTGTCAGATGCG
GTGCGGCGACATGTACAAGATGGACGTCCTTCAAAACTTCCACACGTGTG
CCATCAGCCAGCACCAATGCGTGCCGCAACGAGTGGAAGAAGAAAATAAG
CTCCCCGACCCCTCCCTCCTTGTTCCCTCCCTCTCCCTCCCCTCCCTCAA
CGGCGAGTGGTTCATCACCCACGGCATTAACCCCATCATGGACTGTTTTC
CCTGTCAGCACCATCAGGCGCTGGTCGAGCTCCCTCCCTCTTCTCCTATC
CTCCTCCACTCCTCCAGCACCACCAAGCAGCAGCAATCACATCAACCTCT
ATCATCGCAACAAGAAGGAGGCAAAGGGGTTCCAGGCAGTGTCTCTTCCC
CCCCTCCCTCCCTCCGTCCCTCCATCGTTTTTGACGTTTCCTATCAGGTG
TCTCATGACCAGGGGAAGGAAGGTCCTTTTCTTCAAACGTTCACACGGAA
TCTCCAGCAGCATTTCACGCAGGATTCTCTTTACCCCGGCCTCCTCCACG
CTCGAGCTCAAGGCTATCTCCAACAAGAAGACGATTGGTACATTCTGGCT
GCTGATCCCGAACGCTACATGTTTGTCTGGTATGAGGGTTGCAACAAGGC
CTGGTGTGGTTTTACCGGTGGCGTCGTTTTTTCCCGCACCCCCTCCCTTC
CTCCTTCCCTCTACCCTTCCCTCGAGGAGACGGCGCGCAAGGTGGGGGTG
AAGGGAGGGATCGAGGGCATGTGCAAAGTGGACAACACTCAGTGTAATTT
GAAGTAAAGGGTGCAAACTCTCCCTCTCTCCCTTCCTCCCTCCTCTTCTT
CCTTGCGTGAGCGGGGAGGAGGATGGAGAAGAGGGCGAGGAGAAGTAGGA
GAAGGAGGAGAGGAACGAGGAATAGGAAGACGGTGACGACGTTGATGGTG
GTCCTTCTGTGAAGAGGATTAATAGAAAAGTAGATGAAAGAAGTGGAGAA
AAGTGATTTGGCGGGGAGAAGAGAATGAGGAGGGGGGGGGTAAAGGGTGT
ACAAGGAAAAGAAAGGAAGCAAGACATTGCCAGTAGCATAGAAGCATGCA
AATATAGGTTAGAAAAATGAATCAACGACCCCTTACTTTGGACACCTGCG
TGTAAATC
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protein sequence of NO20G02350.1

>NO20G02350.1-protein ID=NO20G02350.1-protein|Name=NO20G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=577bp
MCAGTRVKVASVFSLPPSLAVSAPPPSSFSSSTGLDTTASSFSPSSTRQI
KPRRARKQHKNHTLVLATVAALVGGRDRGVDGAFIGVGSGVVCGGRRRGG
EELGPWQSATPTSLNDDGGSAEICLSTTTSKWRRRGRMATAVASSSPPPR
SSCSSSIRPDSATATPSFSSSSSSSSRPSSSPFPSSSTSSCWAWPLILPP
LSLPSLPRRLLPLLAAYLPSFLAPSFPFSFSLSSSSFSSSIVAAAAGGGG
GGGGGQEREAVSLEYLHRRSGREGGRAGGKTGIDYGCLVGRCGKELGMAL
VDFRGMHELTCLVTCGPSDLACQMRCGDMYKMDVLQNFHTCAISQHQCVP
QRVEEENKLPDPSLLVPSLSLPSLNGEWFITHGINPIMDCFPCQHHQALV
ELPPSSPILLHSSSTTKQQQSHQPLSSQQEGGKGVPGSVSSPPPSLRPSI
VFDVSYQVSHDQGKEGPFLQTFTRNLQQHFTQDSLYPGLLHARAQGYLQQ
EDDWYILAADPERYMFVWYEGCNKAWCGFTGGVVFSRTPSLPPSLYPSLE
ETARKVGVKGGIEGMCKVDNTQCNLK*
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mRNA from alignment at chr20:707259..710658+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02350.1 ID=NO20G02350.1|Name=NO20G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=3400bp|location=Sequence derived from alignment at chr20:707259..710658+ (Nannochloropsis oceanica)
CACAGGCACACAAGCGTGCAGGCAACATGTGTGCAGGGACAAGGGTAAAG
GTGGCGAGCGTCTTTTCCCTTCCTCCCTCTTTAGCAGTATCAGCACCACC
ACCATCCTCCTTCTCCTCCTCAACGGGATTGGACACCACGGCCAGCAGCT
TTTCGCCCTCTTCCACAAGGCAAATTAAACCACGGAGGGCGCGCAAGCAG
CACAAAAATCACACACTTGTCCTAGCAACGGTGGCAGCACTCGTTGGAGG
GAGAGATAGAGGCGTCGATGGCGCCTTTATTGGAGTAGGAAGTGGCGTGG
TGTGTGGGGGGAGGAGACGAGGAGGGGAGGAGCTAGGTCCATGGCAGTCA
GCCACGCCTACCTCTCTCAATGACGATGGTGGGTCTGCCGAAATATGCCT
AAGCACGACGACAAGCAAGTGGCGGAGACGAGGAAGGATGGCCACGGCAG
TGGCATCATCATCACCACCACCACGATCTTCTTGTTCCTCCTCCATTCGG
CCAGATTCGGCTACCGCCACCCCGTCTTTTTCATCGTCATCATCCTCCTC
CTCCCGTCCCTCCTCATCTCCCTTTCCTTCCTCCTCCACGTCCTCCTGTT
GGGCCTGGCCACTAATCCTTCCCCCTCTCTCCCTCCCCTCCCTCCCTCGC
CGGCTTCTCCCCCTCCTTGCCGCCTATCTCCCCTCCTTCCTCGCTCCCTC
CTTCCCTTTCTCCTTCTCATTATCCTCCTCCTCCTTTTCCTCCTCCATTG
TTGCTGCTGCTGCCGGTGGAGGTGGAGGTGGTGGTGGAGGACAGGAGCGA
GAGGCCGTGAGTCTAGAATATCTCCATCGTCGAAGCGGGAGGGAGGGAGG
GAGGGCGGGAGGGAAGACGGGCATCGATTACGGCTGCCTGGTAGGTCGTT
GTGGGAAGGAGCTTGGGATGGCATTGGTGGATTTCCGGTAAGGAGGGGAG
GAAGGGAGGGAGGGAGGGAGGGAGGGTCTTTTTTCAATTCCGACGTAAGT
CATGTGGCACATGTAATCATTTTTCCTCCCTCCTCTTCCTTCCTTTCCTT
TTCTTTCCTTCCTCCCTTCTCTTTTTCTTCCTCTTTCCTTCAACCTCACG
TGAACGCACGCACGCATGTATCTCACACCCACCCCCACGCCCACAGGGGG
ATGCATGAATTGACTTGCCTCGTAACATGCGGTCCTTCCGACTTGGCCTG
TCAGGTACATAGGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCTCTATCAATCTTGCCGCTTTCCCTCTTTCTCTCCCTCCCTCTCAAA
TCTCCCTCCGTATGTCCTCAGTCTCCGTCCGGACCTTCCCCCCATTCCTC
CTTCCACATCACCCAACCCTCCCTCCTCCCTCCCTCCCTCCTCCCTCCCT
CCCTCCCTCCCCCCCTCGCTAGATGCGGTGCGGCGACATGTACAAGATGG
ACGTCCTTCAAAACTTCCACACGTGTGCCATCAGCCAGCACCAATGCGTG
CCGCAACGAGTGGAAGAAGAAAATAAGGCAAGCCCTCCCTCCCTCCCTCC
CTCCTTCCCTCCCTCCCTTCCTCCCTCCCTCCCCTTCTTCCGCCGTGTTA
GATCACCTGCTTTCCTGCTTGTATTCTAAAGAACATTCAGATTTTGAATA
CCATCTCACATCCCTCCCTCCCTCCCTCTCGCCCGCCCGCCCTCTATGGC
AGCTCCCCGACCCCTCCCTCCTTGTTCCCTCCCTCTCCCTCCCCTCCCTC
AACGGCGAGTGGTTCATCACCCACGGCATTAACCCCATCATGGACTGTTT
TCCCTGTCAGCACCATCAGGTGGGTGGGTAGGTCGGGAGGTAGGGAGGTA
GGAAGGTATAGAGAGACTGAGAGGCGCACGCCCTGCCTGCATTCTTTTCC
CTCCTTTCTTCCCTCCGTCACTCCCTCCCTCCCTCCCTCCCTCTCTCCCT
CTCTCCATTTGCCATGACGAGGGTACTTTTCGCAAAAGCTGATCTTCTAA
GCCTTGCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCGCCCGCCCGCCCGC
CCGCCCTCCCACCTTCCTCCCCTCCTTCAGGCGCTGGTCGAGCTCCCTCC
CTCTTCTCCTATCCTCCTCCACTCCTCCAGCACCACCAAGCAGCAGCAAT
CACATCAACCTCTATCATCGCAACAAGAAGGAGGCAAAGGGGTTCCAGGC
AGTGTCTCTTCCCCCCCTCCCTCCCTCCGTCCCTCCATCGTTTTTGACGT
TTCCTATCAGGTGTCTCATGACCAGGGGAAGGAAGGTCCTTTTCTTCAAA
CGTTCACACGGAATCTCCAGCAGCATTTCACGCAGGTACGCCCTCCCTCC
CTCCTTCCTTCCCTTCCTTCCATCTCTTCCTTCCGTCCTCCTCACCCCTC
TATCCCCCTCCTCTTTCCTCCTTCCTTCCCTCCCTCCCTTTCCTCTTCCC
CCCCCCTTGCTCACCCCCCTCCTCTTCCCTCCCTCCCTCCCTCCCTCCCT
CCCCTTCTTCTTTTCTATTCCTCCCACCCCCTTCCTCTTTCTTCCTTTCC
TCCCTCTCTTCTTCCCTCCTCTCCATCCCTCTCACTCCCCTCCTCTTTCT
TCCCTCCCCTCCTCCCTCCCTTCCTCCCTCCCCCAGGATTCTCTTTACCC
CGGCCTCCTCCACGCTCGAGCTCAAGGCTATCTCCAACAAGAAGACGATT
GGTACATTCTGGCTGCTGATCCCGAACGGTAAGTCTCCCTCCCTTCCTCC
CTCCCTCCTTCCCTCTATGCCTGCCTGCCTGTCGTGCATTGATTCTTTCC
AAATTCTCACGTTCCTCCCTCTCTCCTTCCCCCCCTTCCCTCCCTCCCTC
TCTCAGCTACATGTTTGTCTGGTATGAGGGTTGCAACAAGGCCTGGTGTG
GTTTTACCGGTGGCGTCGTTTTTTCCCGCACCCCCTCCCTTCCTCCTTCC
CTCTACCCTTCCCTCGAGGAGACGGCGCGCAAGGTGGGGGTGAAGGGAGG
GATCGAGGGCATGTGCAAAGTGGACAACACTCAGTGTAATTTGAAGTAAA
GGGTGCAAACTCTCCCTCTCTCCCTTCCTCCCTCCTCTTCTTCCTTGCGT
GAGCGGGGAGGAGGATGGAGAAGAGGGCGAGGAGAAGTAGGAGAAGGAGG
AGAGGAACGAGGAATAGGAAGACGGTGACGACGTTGATGGTGGTCCTTCT
GTGAAGAGGATTAATAGAAAAGTAGATGAAAGAAGTGGAGAAAAGTGATT
TGGCGGGGAGAAGAGAATGAGGAGGGGGGGGGTAAAGGGTGTACAAGGAA
AAGAAAGGAAGCAAGACATTGCCAGTAGCATAGAAGCATGCAAATATAGG
TTAGAAAAATGAATCAACGACCCCTTACTTTGGACACCTGCGTGTAAATC
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Coding sequence (CDS) from alignment at chr20:707259..710658+

>NO20G02350.1 ID=NO20G02350.1|Name=NO20G02350.1|organism=Nannochloropsis oceanica|type=CDS|length=1731bp|location=Sequence derived from alignment at chr20:707259..710658+ (Nannochloropsis oceanica)
ATGTGTGCAGGGACAAGGGTAAAGGTGGCGAGCGTCTTTTCCCTTCCTCC
CTCTTTAGCAGTATCAGCACCACCACCATCCTCCTTCTCCTCCTCAACGG
GATTGGACACCACGGCCAGCAGCTTTTCGCCCTCTTCCACAAGGCAAATT
AAACCACGGAGGGCGCGCAAGCAGCACAAAAATCACACACTTGTCCTAGC
AACGGTGGCAGCACTCGTTGGAGGGAGAGATAGAGGCGTCGATGGCGCCT
TTATTGGAGTAGGAAGTGGCGTGGTGTGTGGGGGGAGGAGACGAGGAGGG
GAGGAGCTAGGTCCATGGCAGTCAGCCACGCCTACCTCTCTCAATGACGA
TGGTGGGTCTGCCGAAATATGCCTAAGCACGACGACAAGCAAGTGGCGGA
GACGAGGAAGGATGGCCACGGCAGTGGCATCATCATCACCACCACCACGA
TCTTCTTGTTCCTCCTCCATTCGGCCAGATTCGGCTACCGCCACCCCGTC
TTTTTCATCGTCATCATCCTCCTCCTCCCGTCCCTCCTCATCTCCCTTTC
CTTCCTCCTCCACGTCCTCCTGTTGGGCCTGGCCACTAATCCTTCCCCCT
CTCTCCCTCCCCTCCCTCCCTCGCCGGCTTCTCCCCCTCCTTGCCGCCTA
TCTCCCCTCCTTCCTCGCTCCCTCCTTCCCTTTCTCCTTCTCATTATCCT
CCTCCTCCTTTTCCTCCTCCATTGTTGCTGCTGCTGCCGGTGGAGGTGGA
GGTGGTGGTGGAGGACAGGAGCGAGAGGCCGTGAGTCTAGAATATCTCCA
TCGTCGAAGCGGGAGGGAGGGAGGGAGGGCGGGAGGGAAGACGGGCATCG
ATTACGGCTGCCTGGTAGGTCGTTGTGGGAAGGAGCTTGGGATGGCATTG
GTGGATTTCCGGGGGATGCATGAATTGACTTGCCTCGTAACATGCGGTCC
TTCCGACTTGGCCTGTCAGATGCGGTGCGGCGACATGTACAAGATGGACG
TCCTTCAAAACTTCCACACGTGTGCCATCAGCCAGCACCAATGCGTGCCG
CAACGAGTGGAAGAAGAAAATAAGCTCCCCGACCCCTCCCTCCTTGTTCC
CTCCCTCTCCCTCCCCTCCCTCAACGGCGAGTGGTTCATCACCCACGGCA
TTAACCCCATCATGGACTGTTTTCCCTGTCAGCACCATCAGGCGCTGGTC
GAGCTCCCTCCCTCTTCTCCTATCCTCCTCCACTCCTCCAGCACCACCAA
GCAGCAGCAATCACATCAACCTCTATCATCGCAACAAGAAGGAGGCAAAG
GGGTTCCAGGCAGTGTCTCTTCCCCCCCTCCCTCCCTCCGTCCCTCCATC
GTTTTTGACGTTTCCTATCAGGTGTCTCATGACCAGGGGAAGGAAGGTCC
TTTTCTTCAAACGTTCACACGGAATCTCCAGCAGCATTTCACGCAGGATT
CTCTTTACCCCGGCCTCCTCCACGCTCGAGCTCAAGGCTATCTCCAACAA
GAAGACGATTGGTACATTCTGGCTGCTGATCCCGAACGCTACATGTTTGT
CTGGTATGAGGGTTGCAACAAGGCCTGGTGTGGTTTTACCGGTGGCGTCG
TTTTTTCCCGCACCCCCTCCCTTCCTCCTTCCCTCTACCCTTCCCTCGAG
GAGACGGCGCGCAAGGTGGGGGTGAAGGGAGGGATCGAGGGCATGTGCAA
AGTGGACAACACTCAGTGTAATTTGAAGTAA
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Synonyms
Publications