NO20G02190, NO20G02190 (gene) Nannochloropsis oceanica

Overview
NameNO20G02190
Unique NameNO20G02190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1862
Alignment locationchr20:657094..658955 +

Link to JBrowse

Properties
Property NameValue
DescriptionRna binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:657094..658955 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO20G02190 vs. NCBI_GenBank
Match: EWM22019.1 (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 158.7 bits (400), Expect = 4.300e-35
Identity = 126/244 (51.64%), Postives = 145/244 (59.43%), Query Frame = 0 
Query:    1 MDKLDVSLDDLIKEDTSSRPAHKK-QGGGSXXXXXXXXXXXXXXXXXXXXXPMRTQQKFS-GVRYNPMSRGAPPAPSQQSPLMRQPQQPKQDLVMTMRASAPIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLNRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIRFGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKL 243
            MDKLDVSLD+L+KE +  R A ++      XXXXXXXXXXXXXXXXXXX  P+RTQ K +  +RYNP+SR A  APS   P       P + +V   R                                                       LL+RLGPK G  R GTKI +SNLL DVT+SEELRELFATVGEVL+AEI+FG DGRSTG+AEVYF K SEA+KAVEKFHTRTLDGVPMHVK+
Sbjct:   42 MDKLDVSLDELVKEGSKGRGAPRRXXXXXXXXXXXXXXXXXXXXXXXXXPGPIRTQHKGTPSMRYNPLSRNA--APSSFQPAAAPVSVPAKQVVSLNR----------------------------EMLSQNHAGVLGRSNGGQVKVGGGGRGLLDRLGPKAGQQRAGTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKM 255
[Close]
BLAST of NO20G02190 vs. NCBI_GenBank
Match: XP_008904774.1 (hypothetical protein PPTG_11249 [Phytophthora parasitica INRA-310] >ETI47749.1 hypothetical protein F443_08036 [Phytophthora parasitica P1569] >ETN09628.1 hypothetical protein PPTG_11249 [Phytophthora parasitica INRA-310] >ETP45630.1 hypothetical protein F442_07969 [Phytophthora parasitica P10297])

HSP 1 Score: 84.7 bits (208), Expect = 7.900e-13
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 0 
Query:  152 LLNRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIRFGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKL 243
            +L+RLG K      GTKILV NL  D+ + EE+RELF TVGEV  AEI +   GRS G A V+FA+ S+A KA++++  RTLDG PM + L
Sbjct:  143 ILSRLGGK-DAASPGTKILVKNLKFDILE-EEVRELFGTVGEVSKAEIVYDRSGRSKGIARVWFARRSDADKAIKQYDGRTLDGQPMQIAL 231
[Close]
BLAST of NO20G02190 vs. NCBI_GenBank
Match: ETK87726.1 (hypothetical protein L915_07862 [Phytophthora parasitica] >ETL41166.1 hypothetical protein L916_07787 [Phytophthora parasitica] >ETL94308.1 hypothetical protein L917_07676 [Phytophthora parasitica] >ETM47539.1 hypothetical protein L914_07748 [Phytophthora parasitica] >ETO76515.1 hypothetical protein F444_08075 [Phytophthora parasitica P1976] >ETP17599.1 hypothetical protein F441_08002 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 84.7 bits (208), Expect = 7.900e-13
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 0 
Query:  152 LLNRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIRFGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKL 243
            +L+RLG K      GTKILV NL  D+ + EE+RELF TVGEV  AEI +   GRS G A V+FA+ S+A KA++++  RTLDG PM + L
Sbjct:  143 ILSRLGGK-DAASPGTKILVKNLKFDILE-EEVRELFGTVGEVSKAEIVYDRSGRSKGIARVWFARRSDADKAIKQYDGRTLDGQPMQIAL 231
[Close]
BLAST of NO20G02190 vs. NCBI_GenBank
Match: KUF77767.1 (Aly/REF export factor 2 [Phytophthora nicotianae])

HSP 1 Score: 84.7 bits (208), Expect = 7.900e-13
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 0 
Query:  152 LLNRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIRFGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKL 243
            +L+RLG K      GTKILV NL  D+ + EE+RELF TVGEV  AEI +   GRS G A V+FA+ S+A KA++++  RTLDG PM + L
Sbjct:  105 ILSRLGGK-DAASPGTKILVKNLKFDILE-EEVRELFGTVGEVSKAEIVYDRSGRSKGIARVWFARRSDADKAIKQYDGRTLDGQPMQIAL 193
[Close]
BLAST of NO20G02190 vs. NCBI_GenBank
Match: XP_002895753.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY54717.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 83.2 bits (204), Expect = 2.300e-12
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 0 
Query:  152 LLNRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIRFGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKL 243
            +L+RLG K      GTKILV NL  D+ + EE+RELF TVGEV   EI +   GRS G A V+FA+ S+A KA++++  RTLDG PM + L
Sbjct:   38 ILSRLGGK-DAASPGTKILVKNLKFDILE-EEVRELFGTVGEVSKTEIVYDRSGRSKGIARVWFARRSDADKAIKQYDGRTLDGQPMQIAL 126
[Close]
BLAST of NO20G02190 vs. NCBI_GenBank
Match: POM75842.1 (RNA binding protein Mlo3 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 83.2 bits (204), Expect = 2.300e-12
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 0 
Query:  152 LLNRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIRFGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKL 243
            +L+RLG K      GTKILV NL  D+ + EE+RELF TVGEV  AEI +   GRS G A V+F + S+A KA++++  RTLDG PM + L
Sbjct:  105 ILSRLGGK-DAASPGTKILVKNLKFDILE-EEVRELFGTVGEVSKAEIVYDRSGRSKGIARVWFTRRSDADKAIKQYDGRTLDGQPMQIAL 193
[Close]
BLAST of NO20G02190 vs. NCBI_GenBank
Match: XP_009513788.1 (hypothetical protein PHYSODRAFT_470000 [Phytophthora sojae] >EGZ26513.1 hypothetical protein PHYSODRAFT_470000 [Phytophthora sojae])

HSP 1 Score: 82.8 bits (203), Expect = 3.000e-12
Identity = 47/89 (52.81%), Postives = 60/89 (67.42%), Query Frame = 0 
Query:  154 NRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIRFGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKL 243
            +RLG K      GTKILV NL  D+ + EE+RELF TVGEV  AEI +   GRS G A V+FA+ S+A KA++++  RTLDG PM + L
Sbjct:   41 SRLGGK-DAASPGTKILVKNLKFDILE-EEVRELFGTVGEVSKAEIVYDRSGRSKGIARVWFARRSDADKAIKQYDGRTLDGQPMQISL 127
[Close]
BLAST of NO20G02190 vs. NCBI_GenBank
Match: OWZ14193.1 (hypothetical protein PHMEG_00012370 [Phytophthora megakarya])

HSP 1 Score: 82.4 bits (202), Expect = 3.900e-12
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 0 
Query:  152 LLNRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIRFGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKL 243
            +L+RLG K      GTKILV NL  D+ + EE+RELF TVGEV  AEI +   GRS G A V+F + S+A KA++++  RTLDG PM + L
Sbjct:   37 ILSRLGGK-DAPSPGTKILVKNLKFDILE-EEVRELFGTVGEVSKAEIVYDRSGRSKGIARVWFTRRSDADKAIKQYDGRTLDGQPMQIAL 125
[Close]
BLAST of NO20G02190 vs. NCBI_GenBank
Match: POM75164.1 (RNA binding protein Mlo3 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 82.4 bits (202), Expect = 3.900e-12
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 0 
Query:  153 LNRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIRFGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKL 243
            L+RLG K      GTKILV NL  D+ + EE+RELF TVGEV  AEI +   GRS G A V+F + S+A KA++++  RTLDG PM + L
Sbjct:   39 LSRLGGK-DAASPGTKILVKNLKFDILE-EEVRELFGTVGEVSKAEIVYDRSGRSKGIARVWFTRRSDADKAIKQYDGRTLDGQPMQIAL 126
[Close]
BLAST of NO20G02190 vs. NCBI_GenBank
Match: XP_024573049.1 (tho complex subunit 4-like [Plasmopara halstedii] >CEG36680.1 tho complex subunit 4-like [Plasmopara halstedii])

HSP 1 Score: 80.9 bits (198), Expect = 1.100e-11
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 0 
Query:  152 LLNRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIRFGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKL 243
            +L+RLG +      GTKILV NL  D+ + EE+RELF TVG+V  AEI +   GRS G A V+F + S+A KA++++  RTLDG PM + L
Sbjct:  135 ILSRLGGR-DAANPGTKILVKNLKFDILE-EEVRELFGTVGDVSKAEIVYDRSGRSKGIARVWFTRRSDADKAIKQYDGRTLDGQPMQILL 223
The following BLAST results are available for this feature:
BLAST of NO20G02190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22019.14.300e-3551.64rna binding protein [Nannochloropsis gaditana][more]
XP_008904774.17.900e-1352.75hypothetical protein PPTG_11249 [Phytophthora para... [more]
ETK87726.17.900e-1352.75hypothetical protein L915_07862 [Phytophthora para... [more]
KUF77767.17.900e-1352.75Aly/REF export factor 2 [Phytophthora nicotianae][more]
XP_002895753.12.300e-1251.65conserved hypothetical protein [Phytophthora infes... [more]
POM75842.12.300e-1251.65RNA binding protein Mlo3 [Phytophthora palmivora v... [more]
XP_009513788.13.000e-1252.81hypothetical protein PHYSODRAFT_470000 [Phytophtho... [more]
OWZ14193.13.900e-1251.65hypothetical protein PHMEG_00012370 [Phytophthora ... [more]
POM75164.13.900e-1252.22RNA binding protein Mlo3 [Phytophthora palmivora v... [more]
XP_024573049.11.100e-1149.45tho complex subunit 4-like [Plasmopara halstedii] ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002763NSK002763Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G02190.1NO20G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100361g5gene8419Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G02190.1NO20G02190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G02190 ID=NO20G02190|Name=NO20G02190|organism=Nannochloropsis oceanica|type=gene|length=1862bp
ATGGACAAACTCGACGTGTCACTGGATGATCTGATCAAGGAGGATACCTC
GAGCCGGCCCGCGCACAAGAAGCAGGGAGGGGGCAGCAGGGGCAGCCGAG
GAGGCAGAGGCAGCGGTGGCAGTGGCCGTAACAATGGCGGTGGGGCGGGG
CCAATGCGCACGCAGCAGAAGTTCTCGGGGGTTCGTTATAACCCAATGAG
CCGTGGTGCTCCTCCCGCTCCTTCCCAACAGTCTCCATTGATGCGGCAGC
CGCAGCAGCCCAAGCAAGATTTGGTGATGACGATGCGCGgtacgtgattt
tactttgtgctttcgaaggaaacgcgcctgccagtgcagattgaccaatg
tgtctttcagtgggccggtagatatggaaacgcgagccccctccctcccc
cccctcccacctctcacttcccaattatccccaaccatccttccacacac
ccgcagCTTCTGCCCCCATCTACCACGCCAGCAGCAGCAGCCGCAGCAGC
ACCACCACCACCACCAACAACAACCACGACGGCACCGGCAGCATGAGCAT
AAGCAATATCCGCCGGACAATCCCCAACACGATGAACAACGGCAATGGCA
GCGGTGGTGGTGGTGGAGGACTGCTAAACAGACTTGGACCCAAGGTGGGG
GGGGGAAGGACCGGGACGAAGATCCTGGTCTCGAACCTGTTAACGGACGT
AACGGACAGCGAGGAGTTACGGGAGTTGTTCGCGACGGTGGGAGAGGTGT
TGCATGCCGAGgtgagggttaagtggagggagggagggagggagggaggg
atggaggaagggagggaggaagggagggaggaagggaaggagggggttgc
agcaacagcaaggaacgtaggacaaaggcgtctcttttcctgttttcctc
ttaattttcgatttccgctaacttttctcttgaaaaactcttccaacttt
ttcgtccttactctcctcttcctccttcttggatccattacagATAAGGT
TTGGCCATGACGGCCGCTCCACTGGCGAAGCAGAGgtacgtccctccctc
cctccctccctcccttcctccttcctccctcccttcttcaatctttccga
taccgtccacccactttttccgtttggttttccctcgctcagGTGTATTT
CGCCAAGCACTCCGAGGCTGTGAAGGCGGTGGAAAAATTTCATACCCGGA
CTTTGGACGGCGTCCCAATGCACGTTAAGCTTGGGCCTGTGGGAGGGAGC
GAGGGAGGGAGAGAGGGAGGGAGGGGTAGGAGCCGGAGTTCGGAAAGAGG
GAGGGATGGGGGCGCTGGCGGAGGAAGGGGCAGGAGTGAGGAGAGGGGTC
GGGGTGGTGGTGGGTTTGGTGGAGGAGAAAGAGGAGGAGGAGGAGGGGAA
GGACGAGGAGGTGGAGGAGGAGGTGGAGGAGGAGGTGGAGGAGGAGGGGA
GAGTAAGGCAACTTTGTTCGGCTCGGCGTTGCGCGAGGGCCCAGGAGGAG
GAGGAGGGAGGGAGAGGGGGTGGGGAGACGAGCCGACATTTTCGGTGATT
CTTGATCAGAGAGGGGAAGGAGGAGAAGGAGGGAAAGGGGGAAGGATGAT
GGGTGAAGCTCTCCCCGGGGGACGGGGAAGGGTGGGAGGAGGAGGAGGGG
GGCCTGGAGGGCAACAGAGCCGTGGTGGTGGGGGGTACGGGTATGAAGAC
CGAAGAGGAGGAGGAGGAGGAGGGGGGGGGATAGGCGGCCGGTGCTGCAG
CAGCCAAGTAGAGGCCGTGGGGTTGGAGGAGGGCGAGGAGGTGGCGGAGG
AGGAAGTGGGGGAGGAAAGGGGGGAGGAAGGGGAGGAGGGAGGGAGACGC
GCGCACCGGTGA
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protein sequence of NO20G02190.1

>NO20G02190.1-protein ID=NO20G02190.1-protein|Name=NO20G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MDKLDVSLDDLIKEDTSSRPAHKKQGGGSRGSRGGRGSGGSGRNNGGGAG
PMRTQQKFSGVRYNPMSRGAPPAPSQQSPLMRQPQQPKQDLVMTMRASAP
IYHASSSSRSSTTTTTNNNHDGTGSMSISNIRRTIPNTMNNGNGSGGGGG
GLLNRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIR
FGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKLGPVGGSEG
GREGGRGRSRSSERGRDGGAGGGRGRSEERGRGGGGFGGGERGGGGGEGR
GGGGGGGGGGGGGGESKATLFGSALREGPGGGGGRERGWGDEPTFSVILD
QRGEGGEGGKGGRMMGEALPGGRGRVGGGGGGPGGQQSRGGGGYGYEDRR
GGGGGGGGIGGRCCSSQVEAVGLEEGEEVAEEEVGEERGEEGEEGGRRAH
R*
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Synonyms
Publications