NO20G02190.1, NO20G02190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02190.1
Unique NameNO20G02190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1356
Alignment locationchr20:657094..658955 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:657094..658955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02190.1 vs.
Match: EWM22019.1 (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 166.8 bits (421), Expect = 1.600e-37
Identity = 168/342 (49.12%), Postives = 195/342 (57.02%), Query Frame = 0 
Query:    1 MDKLDVSLDDLIKEDTSSRPAHKKQGGGSRGSRGGRGS--GGSGRNNGGGA--GPMRTQQKFS-GVRYNPMSRGAPPAPSQQSPLMRQPQQPKQDLVMTMRASAPIYHASSSSRSSTTTTTNNNHDGTGSMSISNIRRTIPNTMNNGNGSGGGGGGLLNRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIRFGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKLGPVGGSEGGREGGRGRSRSSERGRDGGAGGGRGRSEERGRGGGGFGGGERGGG--GGEGRGGGGGGGGGGGGGGESKATLFGSALREGPGGGGGR 336
            MDKLDVSLD+L+KE +  R A ++   GS G   GR +  G   + NGG    GP+RTQ K +  +RYNP+SR A  APS   P       P + +V   R      HA    RS+            G + +                 GGGG GLL+RLGPK G  R GTKI +SNLL DVT+SEELRELFATVGEVL+AEI+FG DGRSTG+AEVYF K SEA+KAVEKFHTRTLDGVPMHVK+ P    EGGREGGR      E G +GG GGGR               G+RGGG  GG+G G           GG  K  LFGSAL E  GGG GR
Sbjct:   42 MDKLDVSLDELVKEGSKGRGAPRR---GSAGKGLGRSATRGLPPKTNGGKGLPGPIRTQHKGTPSMRYNPLSRNA--APSSFQPAAAPVSVPAKQVVSLNREMLSQNHAGVLGRSN-----------GGQVKV-----------------GGGGRGLLDRLGPKAGQQRAGTKIEISNLLPDVTESEELRELFATVGEVLYAEIKFGRDGRSTGQAEVYFTKFSEALKAVEKFHTRTLDGVPMHVKMAP---REGGREGGR------EGGGEGGKGGGR--------------EGDRGGGREGGKGVGMARERSEERQAGGNVKMGLFGSALEE-EGGGDGR 326
The following BLAST results are available for this feature:
BLAST of NO20G02190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22019.11.600e-3749.12rna binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02190NO20G02190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02190.1NO20G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02190.1.cds1NO20G02190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02190.1.cds2NO20G02190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02190.1.cds3NO20G02190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02190.1.cds4NO20G02190.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02190.1 ID=NO20G02190.1|Name=NO20G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
ATGGACAAACTCGACGTGTCACTGGATGATCTGATCAAGGAGGATACCTC
GAGCCGGCCCGCGCACAAGAAGCAGGGAGGGGGCAGCAGGGGCAGCCGAG
GAGGCAGAGGCAGCGGTGGCAGTGGCCGTAACAATGGCGGTGGGGCGGGG
CCAATGCGCACGCAGCAGAAGTTCTCGGGGGTTCGTTATAACCCAATGAG
CCGTGGTGCTCCTCCCGCTCCTTCCCAACAGTCTCCATTGATGCGGCAGC
CGCAGCAGCCCAAGCAAGATTTGGTGATGACGATGCGCGCTTCTGCCCCC
ATCTACCACGCCAGCAGCAGCAGCCGCAGCAGCACCACCACCACCACCAA
CAACAACCACGACGGCACCGGCAGCATGAGCATAAGCAATATCCGCCGGA
CAATCCCCAACACGATGAACAACGGCAATGGCAGCGGTGGTGGTGGTGGA
GGACTGCTAAACAGACTTGGACCCAAGGTGGGGGGGGGAAGGACCGGGAC
GAAGATCCTGGTCTCGAACCTGTTAACGGACGTAACGGACAGCGAGGAGT
TACGGGAGTTGTTCGCGACGGTGGGAGAGGTGTTGCATGCCGAGATAAGG
TTTGGCCATGACGGCCGCTCCACTGGCGAAGCAGAGGTGTATTTCGCCAA
GCACTCCGAGGCTGTGAAGGCGGTGGAAAAATTTCATACCCGGACTTTGG
ACGGCGTCCCAATGCACGTTAAGCTTGGGCCTGTGGGAGGGAGCGAGGGA
GGGAGAGAGGGAGGGAGGGGTAGGAGCCGGAGTTCGGAAAGAGGGAGGGA
TGGGGGCGCTGGCGGAGGAAGGGGCAGGAGTGAGGAGAGGGGTCGGGGTG
GTGGTGGGTTTGGTGGAGGAGAAAGAGGAGGAGGAGGAGGGGAAGGACGA
GGAGGTGGAGGAGGAGGTGGAGGAGGAGGTGGAGGAGGAGGGGAGAGTAA
GGCAACTTTGTTCGGCTCGGCGTTGCGCGAGGGCCCAGGAGGAGGAGGAG
GGAGGGAGAGGGGGTGGGGAGACGAGCCGACATTTTCGGTGATTCTTGAT
CAGAGAGGGGAAGGAGGAGAAGGAGGGAAAGGGGGAAGGATGATGGGTGA
AGCTCTCCCCGGGGGACGGGGAAGGGTGGGAGGAGGAGGAGGGGGGCCTG
GAGGGCAACAGAGCCGTGGTGGTGGGGGGTACGGGTATGAAGACCGAAGA
GGAGGAGGAGGAGGAGGGGGGGGGATAGGCGGCCGGTGCTGCAGCAGCCA
AGTAGAGGCCGTGGGGTTGGAGGAGGGCGAGGAGGTGGCGGAGGAGGAAG
TGGGGGAGGAAAGGGGGGAGGAAGGGGAGGAGGGAGGGAGACGCGCGCAC
CGGTGA
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protein sequence of NO20G02190.1

>NO20G02190.1-protein ID=NO20G02190.1-protein|Name=NO20G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MDKLDVSLDDLIKEDTSSRPAHKKQGGGSRGSRGGRGSGGSGRNNGGGAG
PMRTQQKFSGVRYNPMSRGAPPAPSQQSPLMRQPQQPKQDLVMTMRASAP
IYHASSSSRSSTTTTTNNNHDGTGSMSISNIRRTIPNTMNNGNGSGGGGG
GLLNRLGPKVGGGRTGTKILVSNLLTDVTDSEELRELFATVGEVLHAEIR
FGHDGRSTGEAEVYFAKHSEAVKAVEKFHTRTLDGVPMHVKLGPVGGSEG
GREGGRGRSRSSERGRDGGAGGGRGRSEERGRGGGGFGGGERGGGGGEGR
GGGGGGGGGGGGGGESKATLFGSALREGPGGGGGRERGWGDEPTFSVILD
QRGEGGEGGKGGRMMGEALPGGRGRVGGGGGGPGGQQSRGGGGYGYEDRR
GGGGGGGGIGGRCCSSQVEAVGLEEGEEVAEEEVGEERGEEGEEGGRRAH
R*
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mRNA from alignment at chr20:657094..658955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02190.1 ID=NO20G02190.1|Name=NO20G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1862bp|location=Sequence derived from alignment at chr20:657094..658955+ (Nannochloropsis oceanica)
ATGGACAAACTCGACGTGTCACTGGATGATCTGATCAAGGAGGATACCTC
GAGCCGGCCCGCGCACAAGAAGCAGGGAGGGGGCAGCAGGGGCAGCCGAG
GAGGCAGAGGCAGCGGTGGCAGTGGCCGTAACAATGGCGGTGGGGCGGGG
CCAATGCGCACGCAGCAGAAGTTCTCGGGGGTTCGTTATAACCCAATGAG
CCGTGGTGCTCCTCCCGCTCCTTCCCAACAGTCTCCATTGATGCGGCAGC
CGCAGCAGCCCAAGCAAGATTTGGTGATGACGATGCGCGGTACGTGATTT
TACTTTGTGCTTTCGAAGGAAACGCGCCTGCCAGTGCAGATTGACCAATG
TGTCTTTCAGTGGGCCGGTAGATATGGAAACGCGAGCCCCCTCCCTCCCC
CCCCTCCCACCTCTCACTTCCCAATTATCCCCAACCATCCTTCCACACAC
CCGCAGCTTCTGCCCCCATCTACCACGCCAGCAGCAGCAGCCGCAGCAGC
ACCACCACCACCACCAACAACAACCACGACGGCACCGGCAGCATGAGCAT
AAGCAATATCCGCCGGACAATCCCCAACACGATGAACAACGGCAATGGCA
GCGGTGGTGGTGGTGGAGGACTGCTAAACAGACTTGGACCCAAGGTGGGG
GGGGGAAGGACCGGGACGAAGATCCTGGTCTCGAACCTGTTAACGGACGT
AACGGACAGCGAGGAGTTACGGGAGTTGTTCGCGACGGTGGGAGAGGTGT
TGCATGCCGAGGTGAGGGTTAAGTGGAGGGAGGGAGGGAGGGAGGGAGGG
ATGGAGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAAGGAGGGGGTTGC
AGCAACAGCAAGGAACGTAGGACAAAGGCGTCTCTTTTCCTGTTTTCCTC
TTAATTTTCGATTTCCGCTAACTTTTCTCTTGAAAAACTCTTCCAACTTT
TTCGTCCTTACTCTCCTCTTCCTCCTTCTTGGATCCATTACAGATAAGGT
TTGGCCATGACGGCCGCTCCACTGGCGAAGCAGAGGTACGTCCCTCCCTC
CCTCCCTCCCTCCCTTCCTCCTTCCTCCCTCCCTTCTTCAATCTTTCCGA
TACCGTCCACCCACTTTTTCCGTTTGGTTTTCCCTCGCTCAGGTGTATTT
CGCCAAGCACTCCGAGGCTGTGAAGGCGGTGGAAAAATTTCATACCCGGA
CTTTGGACGGCGTCCCAATGCACGTTAAGCTTGGGCCTGTGGGAGGGAGC
GAGGGAGGGAGAGAGGGAGGGAGGGGTAGGAGCCGGAGTTCGGAAAGAGG
GAGGGATGGGGGCGCTGGCGGAGGAAGGGGCAGGAGTGAGGAGAGGGGTC
GGGGTGGTGGTGGGTTTGGTGGAGGAGAAAGAGGAGGAGGAGGAGGGGAA
GGACGAGGAGGTGGAGGAGGAGGTGGAGGAGGAGGTGGAGGAGGAGGGGA
GAGTAAGGCAACTTTGTTCGGCTCGGCGTTGCGCGAGGGCCCAGGAGGAG
GAGGAGGGAGGGAGAGGGGGTGGGGAGACGAGCCGACATTTTCGGTGATT
CTTGATCAGAGAGGGGAAGGAGGAGAAGGAGGGAAAGGGGGAAGGATGAT
GGGTGAAGCTCTCCCCGGGGGACGGGGAAGGGTGGGAGGAGGAGGAGGGG
GGCCTGGAGGGCAACAGAGCCGTGGTGGTGGGGGGTACGGGTATGAAGAC
CGAAGAGGAGGAGGAGGAGGAGGGGGGGGGATAGGCGGCCGGTGCTGCAG
CAGCCAAGTAGAGGCCGTGGGGTTGGAGGAGGGCGAGGAGGTGGCGGAGG
AGGAAGTGGGGGAGGAAAGGGGGGAGGAAGGGGAGGAGGGAGGGAGACGC
GCGCACCGGTGA
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Coding sequence (CDS) from alignment at chr20:657094..658955+

>NO20G02190.1 ID=NO20G02190.1|Name=NO20G02190.1|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at chr20:657094..658955+ (Nannochloropsis oceanica)
ATGGACAAACTCGACGTGTCACTGGATGATCTGATCAAGGAGGATACCTC
GAGCCGGCCCGCGCACAAGAAGCAGGGAGGGGGCAGCAGGGGCAGCCGAG
GAGGCAGAGGCAGCGGTGGCAGTGGCCGTAACAATGGCGGTGGGGCGGGG
CCAATGCGCACGCAGCAGAAGTTCTCGGGGGTTCGTTATAACCCAATGAG
CCGTGGTGCTCCTCCCGCTCCTTCCCAACAGTCTCCATTGATGCGGCAGC
CGCAGCAGCCCAAGCAAGATTTGGTGATGACGATGCGCGCTTCTGCCCCC
ATCTACCACGCCAGCAGCAGCAGCCGCAGCAGCACCACCACCACCACCAA
CAACAACCACGACGGCACCGGCAGCATGAGCATAAGCAATATCCGCCGGA
CAATCCCCAACACGATGAACAACGGCAATGGCAGCGGTGGTGGTGGTGGA
GGACTGCTAAACAGACTTGGACCCAAGGTGGGGGGGGGAAGGACCGGGAC
GAAGATCCTGGTCTCGAACCTGTTAACGGACGTAACGGACAGCGAGGAGT
TACGGGAGTTGTTCGCGACGGTGGGAGAGGTGTTGCATGCCGAGATAAGG
TTTGGCCATGACGGCCGCTCCACTGGCGAAGCAGAGGTGTATTTCGCCAA
GCACTCCGAGGCTGTGAAGGCGGTGGAAAAATTTCATACCCGGACTTTGG
ACGGCGTCCCAATGCACGTTAAGCTTGGGCCTGTGGGAGGGAGCGAGGGA
GGGAGAGAGGGAGGGAGGGGTAGGAGCCGGAGTTCGGAAAGAGGGAGGGA
TGGGGGCGCTGGCGGAGGAAGGGGCAGGAGTGAGGAGAGGGGTCGGGGTG
GTGGTGGGTTTGGTGGAGGAGAAAGAGGAGGAGGAGGAGGGGAAGGACGA
GGAGGTGGAGGAGGAGGTGGAGGAGGAGGTGGAGGAGGAGGGGAGAGTAA
GGCAACTTTGTTCGGCTCGGCGTTGCGCGAGGGCCCAGGAGGAGGAGGAG
GGAGGGAGAGGGGGTGGGGAGACGAGCCGACATTTTCGGTGATTCTTGAT
CAGAGAGGGGAAGGAGGAGAAGGAGGGAAAGGGGGAAGGATGATGGGTGA
AGCTCTCCCCGGGGGACGGGGAAGGGTGGGAGGAGGAGGAGGGGGGCCTG
GAGGGCAACAGAGCCGTGGTGGTGGGGGGTACGGGTATGAAGACCGAAGA
GGAGGAGGAGGAGGAGGGGGGGGGATAGGCGGCCGGTGCTGCAGCAGCCA
AGTAGAGGCCGTGGGGTTGGAGGAGGGCGAGGAGGTGGCGGAGGAGGAAG
TGGGGGAGGAAAGGGGGGAGGAAGGGGAGGAGGGAGGGAGACGCGCGCAC
CGGTGA
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Synonyms
Publications