NO20G02140, NO20G02140 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G02140 vs. NCBI_GenBank
Match: EWM22022.1 (heat shock protein hsp20 [Nannochloropsis gaditana]) HSP 1 Score: 165.2 bits (417), Expect = 2.500e-37 Identity = 91/154 (59.09%), Postives = 105/154 (68.18%), Query Frame = 0 Query: 1 MALSRF---DPFGSMLTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAIVPNLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVKRMRGKKAE 152 MALSR+ DP GS L ER Q +VP+L+LDVKEKNNEF+VA+DAPGMKKEDFDVTF+NNVLRVACERKEEKEEEDARWHISERRWGS SRSVRLPR A + I AEYD+GVLK+ + +++E Sbjct: 1 MALSRYWRDDPLGSNLIER---DPFADFFSTGGGWLTPSVGGALSTGTSRGQPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESE 151
BLAST of NO20G02140 vs. NCBI_GenBank
Match: EWM28800.1 (heat shock protein hsp20 [Nannochloropsis gaditana]) HSP 1 Score: 90.1 bits (222), Expect = 1.000e-14 Identity = 43/113 (38.05%), Postives = 72/113 (63.72%), Query Frame = 0 Query: 53 PNLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVKRMRGKKAEREGXXXXXXQDEAF 166 P++ +D+ E + EF + VD PG KKED D++ ++++L V ER+EE E+ +H+ ERR G RS+RLPR+A ++++A+Y GVL++ KKAE+ D+++ Sbjct: 33 PSMQMDISETDREFRIQVDLPGHKKEDIDISVDDDILTVQTERREEHSEDTENFHVKERRVGKAKRSIRLPRSADTDSVRAQYADGVLRI--CVEKKAEKGQSKSIKITDQSY 143
BLAST of NO20G02140 vs. NCBI_GenBank
Match: OGO72027.1 (heat-shock protein Hsp20 [Chloroflexi bacterium RBG_19FT_COMBO_56_12]) HSP 1 Score: 84.0 bits (206), Expect = 7.300e-13 Identity = 40/98 (40.82%), Postives = 63/98 (64.29%), Query Frame = 0 Query: 54 NLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVKRMRGKKAE 152 +L+LDV E +EF V PG+ +D ++TF NN L + E KEEK+ E A +H+ ERR+GS +RS+ LP + I+A Y+ GVLK++ + ++ + Sbjct: 39 DLALDVTESEDEFTVKASLPGINPDDLEITFTNNTLTIKGETKEEKDVEKAHYHLRERRYGSFARSITLPAGIETDKIQANYEVGVLKLRLPKAEEVK 136
BLAST of NO20G02140 vs. NCBI_GenBank
Match: OQY88376.1 (hypothetical protein B6D39_11330 [Anaerolineae bacterium UTCFX2]) HSP 1 Score: 83.6 bits (205), Expect = 9.500e-13 Identity = 39/102 (38.24%), Postives = 69/102 (67.65%), Query Frame = 0 Query: 49 QAIVPNLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVKRMRGKKA 151 Q + NL+LDV E ++E+ V+ PG+ +D ++T+++NVL + E +E++E ++ R+H+ ERR+GS SRS+ LP + + IKA+Y GVL + + ++A Sbjct: 36 QPMTWNLALDVAETDDEYRVSASLPGIDPDDLEITYDSNVLTIKGEMREDQEVKEERYHMRERRYGSFSRSISLPTSVKADKIKADYSKGVLTLHLPKSEEA 137
BLAST of NO20G02140 vs. NCBI_GenBank
Match: PKL36239.1 (hypothetical protein CVV44_18670 [Spirochaetae bacterium HGW-Spirochaetae-1]) HSP 1 Score: 83.6 bits (205), Expect = 9.500e-13 Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 0 Query: 57 LDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVKRMRGKKAE 152 LDV+E V + PG+ ++D DVT ENNVL +A E+K EKEE+D R+ ISERR+GS SRS+ LP + IKA + GVL V R + A+ Sbjct: 47 LDVQEDAKAITVKAEIPGIDEKDLDVTLENNVLTIAGEKKLEKEEKDKRYTISERRFGSFSRSISLPEGVSPDRIKAAFKNGVLSVTIPRDESAQ 141
BLAST of NO20G02140 vs. NCBI_GenBank
Match: OGP94089.1 (molecular chaperone [Deltaproteobacteria bacterium RBG_16_47_11]) HSP 1 Score: 82.4 bits (202), Expect = 2.100e-12 Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 0 Query: 56 SLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVKRMRGKKAERE 154 SLDV E + V + PGM + D++F + +L V E K+EKEE+D +H+ ERR+GS SRSVRLP + IKA Y GVLK+ + ++A+++ Sbjct: 45 SLDVSETKDNIMVKAELPGMDPKKIDISFADGILTVKGENKQEKEEKDENYHMVERRYGSFSRSVRLPHEVKSDKIKANYKEGVLKITLPKSEEAKKK 142
BLAST of NO20G02140 vs. NCBI_GenBank
Match: EPZ32380.1 (Alpha crystallin/Hsp20 domain-containing protein [Rozella allomycis CSF55]) HSP 1 Score: 81.6 bits (200), Expect = 3.600e-12 Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = 0 Query: 51 IVPNLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVKRMRGKKAER 153 I P L+LD+ E +N + + D PG+ KED V E+NVL V ER+++++E + H++ER +G RSVRLP E +A D GVLK++ + + AE+ Sbjct: 40 IKPQLALDISELDNAYVIQADLPGIAKEDISVNLEDNVLTVETERRDQRDENNGTIHLTERFYGKMKRSVRLPAQVDPEKTEATLDNGVLKLRVAKSEAAEK 141
BLAST of NO20G02140 vs. NCBI_GenBank
Match: WP_015897492.1 (Hsp20/alpha crystallin family protein [Acidobacterium capsulatum] >ACO34416.1 heat shock protein, Hsp20 family [Acidobacterium capsulatum ATCC 51196]) HSP 1 Score: 80.9 bits (198), Expect = 6.200e-12 Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 0 Query: 57 LDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVK 144 +D+ E + + ++ PGMK+EDFD+ ENN L + ERK EKEE++ +H ERR+G+ RS +P E +KA YDAGVL+++ Sbjct: 44 VDIYEDEHRIVLKLEVPGMKQEDFDIQLENNTLTIRGERKFEKEEKEENFHRIERRYGTFFRSFAVPNTVNTEQVKAGYDAGVLRIE 130
BLAST of NO20G02140 vs. NCBI_GenBank
Match: KDD76497.1 (hypothetical protein H632_c205p1 [Helicosporidium sp. ATCC 50920]) HSP 1 Score: 80.5 bits (197), Expect = 8.000e-12 Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 0 Query: 50 AIVPNLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKEE--EDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKV 143 A+ +++DV E + F+V D PG+K++D VT ++VLR+ E EEKEE ED WH ER SRS+RLPR A E+IKA+Y GVL + Sbjct: 27 ALTRGMAVDVTESKDAFQVQADVPGVKRDDIHVTVHDDVLRLNVESTEEKEEQAEDKTWHRYERSGTWASRSIRLPRNADLEHIKAKYAEGVLSL 121
BLAST of NO20G02140 vs. NCBI_GenBank
Match: WP_050058308.1 (Hsp20/alpha crystallin family protein [Silvibacterium bohemicum]) HSP 1 Score: 80.5 bits (197), Expect = 8.000e-12 Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 0 Query: 50 AIVPNLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVKRMRGKKAE 152 A VP +D+ E ++ + ++ PG+K+EDFD+ ENN L V ERK EKEE++ +H ERR+GS RS +P E +KA YDAGVL+++ + +A+ Sbjct: 40 AFVP--PVDIYEDQHKIVLKLEVPGLKQEDFDIQLENNTLTVRGERKFEKEEKEENFHRIERRYGSFFRSFTVPTTVNHEGVKAGYDAGVLRIELEKRAEAK 139 The following BLAST results are available for this feature:
BLAST of NO20G02140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G02140 ID=NO20G02140|Name=NO20G02140|organism=Nannochloropsis oceanica|type=gene|length=2460bpback to top protein sequence of NO20G02140.1 >NO20G02140.1-protein ID=NO20G02140.1-protein|Name=NO20G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bpback to top Synonyms
Publications
|