NO20G02140.1, NO20G02140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02140.1
Unique NameNO20G02140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2151
Alignment locationchr20:639103..641562 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:639103..641562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02140.1 vs.
Match: EWM22022.1 (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 217.2 bits (552), Expect = 5.500e-53
Identity = 114/154 (74.03%), Postives = 130/154 (84.42%), Query Frame = 0 
Query:    1 MALSRF---DPFGSMLTERDPFADFFSTGGGWLAPSGVGGGALTSGGMGRGQAIVPNLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKEEEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVKRMRGKKAE 152
            MALSR+   DP GS L ERDPFADFFSTGGGWL PS   GGAL++G   RGQ +VP+L+LDVKEKNNEF+VA+DAPGMKKEDFDVTF+NNVLRVACERKEEKEEEDARWHISERRWGS SRSVRLPR A  + I AEYD+GVLK+   + +++E
Sbjct:    1 MALSRYWRDDPLGSNLIERDPFADFFSTGGGWLTPSV--GGALSTG-TSRGQPVVPSLNLDVKEKNNEFQVAIDAPGMKKEDFDVTFDNNVLRVACERKEEKEEEDARWHISERRWGSSSRSVRLPRTANGDGITAEYDSGVLKIHVPKTQESE 151
The following BLAST results are available for this feature:
BLAST of NO20G02140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22022.15.500e-5374.03heat shock protein hsp20 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02140NO20G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02140.1NO20G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02140.1.cds1NO20G02140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02140.1.cds2NO20G02140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02140.1.cds3NO20G02140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02140.1 ID=NO20G02140.1|Name=NO20G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp
ACTCGGATTTGTTCGCTTCCCTTCCTTTGCCTTTGATTACTACTTTGTGT
CTTTTTTCCTTCTTTGTTATTGTCTTGTCAACCCGTCAACGAGAGTTTAT
TTAGCGTCTCCATCGCTAGATCCTTGGCCTGACTGAGGACCTCCTGAGTT
TTCTCGGTGGGCGTGATAGACATCGACATGCTGCTGCTTGGAAGGGGGGG
CTTGCGTAACGGAGAGGCAGGTGGTTGATGTGGTGTGCTCTTGGCTTGTC
TGTCTTGCCTATTCTAAGGCGTATGTTCACTGCATCGCGTGGTGAAGAGG
GAGAAAGGGGGTATAGATTATGCGTGGTTTGTATGCTGTGGTTGCGGAAA
GAGGGGCTGGCATGATGAACAAATTGGGAGGGAACAAAGTAGGAAAACAG
CGGGCAGAGCGGCTTGCTGCATGAGGTGCATCTGTTGGTTGCACAGTGCG
CCTACAAGCTTCTGCATCCACAGGACCAGGACAGGAGTCGAGCATCAACA
CCACGTAACCAAACCTTCGCCAGTGCCAGCCCAGTCCGACGACACCTGCC
ATCTATCTCCCTTGTTCGAGAAAGAGAAGCTACGCAGCAACTTGAAGTTG
GCCGTTGGCTAACATATGTTCTCCGCTTAGTTCCCTTTCTTTCCCAAAGA
CGGTGAATGTTTTCCATTTCTCGAACCCCGGGCGAGTAGTATCCCGTGCA
GGCACTTTTCTTTGATGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTG
TGAGTGTATGGCATGGCTTTCTTTCACCCCCGGGACCTTTAATGAAAGCA
CGACATAGTTTCTAATCTTTTTCCCCCAGACACCACATGACTGGGCACAC
ATTTTCCCAGCCTTTTCCTTCTGTCCTGGTGTGCCTATTCTGTGTATCTT
TTGGACCAACCGAATGTTCTGTTCTACATTGTGCATGTGTAGGCTGTCTC
ATTGACTTCGTGCTCCTCGCCACCCACACTCACGTCCTATACATTGTACC
ATCGCGCCATAGCACCGCCCCCCGTTTGTTGGGCTTTTGTCGCAAGACGG
AGACAGACACGATTTTACTCCCACAAGCCATTATGGCTCCAGAAATACCC
CCACACCACACGGGTGTGTCTTCTCACTGGACGTCCACAGCACCCACGGG
CGTCTCATTTCTTCCCTTTCCCTCCCTTTCATTTCCCGTGCACATGCCCA
TGCCCACCACAGCAGAACCCGAAGTCTCAAGACTCAAGAACAAATCAACC
AAGCCTACAACCCAACAACCATGGCTCTCTCTCGCTTCGACCCCTTTGGA
TCCATGCTCACCGAGCGCGACCCGTTTGCCGACTTCTTTAGCACCGGAGG
CGGGTGGCTTGCCCCCAGCGGCGTGGGAGGCGGGGCTTTGACCAGTGGTG
GCATGGGCCGCGGACAAGCTATCGTGCCCAACCTGAGCCTGGATGTGAAG
GAGAAAAACAACGAGTTTGAGGTCGCTGTTGATGCGCCGGGCATGAAGAA
GGAAGACTTCGATGTGACGTTCGAGAACAACGTTCTGCGTGTGGCGTGTG
AGCGCAAGGAGGAGAAGGAGGAAGAGGACGCACGTTGGCACATTTCCGAG
CGGCGCTGGGGCTCTTGCTCCCGCTCTGTTCGCCTTCCTCGTGCCGCTGG
CTGCGAGAACATCAAGGCCGAATACGACGCGGGCGTTCTTAAGGTAAAGA
GGATGAGAGGGAAGAAGGCAGAGAGGGAGGGAGGGAAGAAGGGAGAGAGA
CAGGATGAAGCCTTTGATTCTCACACCACTTTCGAATTCTTTCCTCCCAT
TCCCTCTTTCCCCCCCTCTAGATCCACGTGCCTAAGACGCAGAAGAGCGA
GACCCGCAAGGCCATTCGTGTGGAGTAGAGAAGAGAATGAGAGAAGAGAG
AGAGAGAGAGGGGAGAGAGAGAAAGAGAGAGGGAGAGGGAGAGGGCGCAG
GGGGAAGGGAGAAGAAAAATCTTCGAGTTCCCAGTCCAGAGAGTGTGCAG
TGTAAAACTCGTGGCCTAGATTTGTAAAACCCCTCCAAAAAGTGAAGGAA
AATATTACATAGTCCTCCTTGTACGTAGTGAGCGAGAAGAAAAGAGTTCA
ATCGGGGAAGTAGAAGTAACAGCAGGAGAAGTAATAGGCGTGCAAGTTGC
A
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protein sequence of NO20G02140.1

>NO20G02140.1-protein ID=NO20G02140.1-protein|Name=NO20G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MALSRFDPFGSMLTERDPFADFFSTGGGWLAPSGVGGGALTSGGMGRGQA
IVPNLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKE
EEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKVKRMRGKKA
EREGGKKGERQDEAFDSHTTFEFFPPIPSFPPSRSTCLRRRRARPARPFV
WSREENERRERERGEREKERGRGRGRRGKGEEKSSSSQSRECAV*
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mRNA from alignment at chr20:639103..641562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02140.1 ID=NO20G02140.1|Name=NO20G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp|location=Sequence derived from alignment at chr20:639103..641562+ (Nannochloropsis oceanica)
ACTCGGATTTGTTCGCTTCCCTTCCTTTGCCTTTGATTACTACTTTGTGT
CTTTTTTCCTTCTTTGTTATTGTCTTGTCAACCCGTCAACGAGAGTTTAT
TTAGCGTCTCCATCGCTAGATCCTTGGCCTGACTGAGGACCTCCTGAGTT
TTCTCGGTGGGCGTGATAGACATCGACATGCTGCTGCTTGGAAGGGGGGG
CTTGCGTAACGGAGAGGCAGGTGGTTGATGTGGTGTGCTCTTGGCTTGTC
TGTCTTGCCTATTCTAAGGCGTATGTTCACTGCATCGCGTGGTGAAGAGG
GAGAAAGGGGGTATAGATTATGCGTGGTTTGTATGCTGTGGTTGCGGAAA
GAGGGGCTGGCATGATGAACAAATTGGGAGGGAACAAAGTAGGAAAACAG
CGGGCAGAGCGGCTTGCTGCATGAGGTGCATCTGTTGGTTGCACAGTGCG
CCTACAAGCTTCTGCATCCACAGGACCAGGACAGGAGTCGAGCATCAACA
CCACGTAACCAAACCTTCGCCAGTGCCAGCCCAGTCCGACGACACCTGCC
ATCTATCTCCCTTGTTCGAGAAAGAGAAGCTACGCAGCAACTTGAAGTTG
GCCGTTGGCTAACATATGTTCTCCGCTTAGTTCCCTTTCTTTCCCAAAGA
CGGTGAATGTTTTCCATTTCTCGAACCCCGGGCGAGTAGTATCCCGTGCA
GGCACTTTTCTTTGATGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTG
TGAGTGTATGGCATGGCTTTCTTTCACCCCCGGGACCTTTAATGAAAGCA
CGACATAGTTTCTAATCTTTTTCCCCCAGACACCACATGACTGGGCACAC
ATTTTCCCAGCCTTTTCCTTCTGTCCTGGTGTGCCTATTCTGTGTATCTT
TTGGACCAACCGAATGTTCTGTTCTACATTGTGCATGTGTAGGCTGTCTC
ATTGACTTCGTGCTCCTCGCCACCCACACTCACGTCCTATACATTGTACC
ATCGCGCCATAGCACCGCCCCCCGTTTGTTGGGCTTTTGTCGCAAGACGG
AGACAGACACGATTTTACTCCCACAAGCCATTATGGCTCCAGAAATACCC
CCACACCACACGGGTGTGTCTTCTCACTGGACGTCCACAGCACCCACGGG
CGTCTCATTTCTTCCCTTTCCCTCCCTTTCATTTCCCGTGCACATGCCCA
TGCCCACCACAGCAGAACCCGAAGTCTCAAGACTCAAGAACAAATCAACC
AAGCCTACAACCCAACAACCATGGCTCTCTCTCGCTTCGACCCCTTTGGA
TCCATGCTCACCGAGCGCGACCCGTTTGCCGACTTCTTTAGCACCGGAGG
TAAGTATTCAGGAGGGAAGGAAGGTGGAAGTGGAGAGGAGGCGGCGGTAG
ACAGGGATGGATGGCGGGAGGAAGATCTTGAAACTGAAGGAAGAGGTCAC
CTTTCTTTCTATAGCTGACCAGGCACCGGCCTCACATCCATCTTCCACCT
CTCCTACACCCACCTACCCTCTCTTTCTACACAGGCGGGTGGCTTGCCCC
CAGCGGCGTGGGAGGCGGGGCTTTGACCAGTGGTGGCATGGGCCGCGGAC
AAGCTATCGTGCCCAACCTGAGCCTGGATGTGAAGGAGAAAAACAACGAG
TTTGAGGTCGCTGTTGATGCGCCGGGCATGAAGAAGGAAGGTATGTTGGC
GTTGTGGCTGAAGGGAGTGGTGAGGATGCTGTCTTGCCTGTTGTCTTCCT
TCTGTCGTTCTTTCCTTATATCCTTACACCCACCCTCGCTTTCTCCCTTC
CACTCTGCTTCCAGACTTCGATGTGACGTTCGAGAACAACGTTCTGCGTG
TGGCGTGTGAGCGCAAGGAGGAGAAGGAGGAAGAGGACGCACGTTGGCAC
ATTTCCGAGCGGCGCTGGGGCTCTTGCTCCCGCTCTGTTCGCCTTCCTCG
TGCCGCTGGCTGCGAGAACATCAAGGCCGAATACGACGCGGGCGTTCTTA
AGGTAAAGAGGATGAGAGGGAAGAAGGCAGAGAGGGAGGGAGGGAAGAAG
GGAGAGAGACAGGATGAAGCCTTTGATTCTCACACCACTTTCGAATTCTT
TCCTCCCATTCCCTCTTTCCCCCCCTCTAGATCCACGTGCCTAAGACGCA
GAAGAGCGAGACCCGCAAGGCCATTCGTGTGGAGTAGAGAAGAGAATGAG
AGAAGAGAGAGAGAGAGAGGGGAGAGAGAGAAAGAGAGAGGGAGAGGGAG
AGGGCGCAGGGGGAAGGGAGAAGAAAAATCTTCGAGTTCCCAGTCCAGAG
AGTGTGCAGTGTAAAACTCGTGGCCTAGATTTGTAAAACCCCTCCAAAAA
GTGAAGGAAAATATTACATAGTCCTCCTTGTACGTAGTGAGCGAGAAGAA
AAGAGTTCAATCGGGGAAGTAGAAGTAACAGCAGGAGAAGTAATAGGCGT
GCAAGTTGCA
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Coding sequence (CDS) from alignment at chr20:639103..641562+

>NO20G02140.1 ID=NO20G02140.1|Name=NO20G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr20:639103..641562+ (Nannochloropsis oceanica)
ATGGCTCTCTCTCGCTTCGACCCCTTTGGATCCATGCTCACCGAGCGCGA
CCCGTTTGCCGACTTCTTTAGCACCGGAGGCGGGTGGCTTGCCCCCAGCG
GCGTGGGAGGCGGGGCTTTGACCAGTGGTGGCATGGGCCGCGGACAAGCT
ATCGTGCCCAACCTGAGCCTGGATGTGAAGGAGAAAAACAACGAGTTTGA
GGTCGCTGTTGATGCGCCGGGCATGAAGAAGGAAGACTTCGATGTGACGT
TCGAGAACAACGTTCTGCGTGTGGCGTGTGAGCGCAAGGAGGAGAAGGAG
GAAGAGGACGCACGTTGGCACATTTCCGAGCGGCGCTGGGGCTCTTGCTC
CCGCTCTGTTCGCCTTCCTCGTGCCGCTGGCTGCGAGAACATCAAGGCCG
AATACGACGCGGGCGTTCTTAAGGTAAAGAGGATGAGAGGGAAGAAGGCA
GAGAGGGAGGGAGGGAAGAAGGGAGAGAGACAGGATGAAGCCTTTGATTC
TCACACCACTTTCGAATTCTTTCCTCCCATTCCCTCTTTCCCCCCCTCTA
GATCCACGTGCCTAAGACGCAGAAGAGCGAGACCCGCAAGGCCATTCGTG
TGGAGTAGAGAAGAGAATGAGAGAAGAGAGAGAGAGAGAGGGGAGAGAGA
GAAAGAGAGAGGGAGAGGGAGAGGGCGCAGGGGGAAGGGAGAAGAAAAAT
CTTCGAGTTCCCAGTCCAGAGAGTGTGCAGTGTAA
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Synonyms
Publications