NO20G01970, NO20G01970 (gene) Nannochloropsis oceanica

Overview
NameNO20G01970
Unique NameNO20G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1704
Alignment locationchr20:584364..586067 -

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Properties
Property NameValue
DescriptionChaperone-domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:584364..586067 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036869J_dom_sf
IPR001623DnaJ_domain
Homology
BLAST of NO20G01970 vs. NCBI_GenBank
Match: EWM22061.1 (chaperone -domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 301.2 bits (770), Expect = 6.700e-78
Identity = 165/256 (64.45%), Postives = 189/256 (73.83%), Query Frame = 0
Query:  316 SHAGSSASSTPF-TRRGRVPPTDEHAQAEMMSAAFGGGAGGPGTISFEDMMTQQERSMHGGSGDESATVRARLAAKLVLETDALLYGGQGGSGGAGL---EIGDXXXXXXXXXMIEGKKAALLRDRTGKEIARILREGEKDDPNWYAVLGISRRASAQTVKDSFRRLVLLIHPDKTASRGAQEAFQLVQEAYESLSGPSERRAYDLYLVKLRTKHWKQRIRPLKDKLDELSDYYEPVLERKGKIALGAFLVWALVL 568
            S+ G+++  + F  +RGRVPPT + AQAEMMSAAFG      G  SFE+M +Q +      +G+E+ T RA LAAKLVLETDALLYGG GG  GA L   E GD            G K  L++DRT KEI RILREGE+++PNWY VLGISRRA AQ VKDSFRRLVLLIHPDKT+  GAQEAFQLVQEAYESLS P ER AYD YLVKLR K WKQR+RPL DK+DE SDYYEP+LERKG+IA  AFL+WALVL
Sbjct:  278 SNRGTTSRFSSFHAQRGRVPPTSDEAQAEMMSAAFGSVR---GKASFEEMNSQHQGGTVDRTGEENGTARAHLAAKLVLETDALLYGGHGGPVGATLLEVEGGDEDWENGEGAGSAGMKNVLVKDRTSKEIQRILREGEREEPNWYVVLGISRRAQAQAVKDSFRRLVLLIHPDKTSHLGAQEAFQLVQEAYESLSSPIERLAYDQYLVKLRAKRWKQRLRPLVDKVDEFSDYYEPILERKGQIAAAAFLLWALVL 530          
BLAST of NO20G01970 vs. NCBI_GenBank
Match: EOY30211.1 (Uncharacterized protein TCM_037493 [Theobroma cacao])

HSP 1 Score: 73.6 bits (179), Expect = 2.300e-9
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 0
Query:  447 REGEKDDPNWYAVLGI-SRRASAQTVKDSFRRLVLLIHPDKTASRGAQEAFQLVQEAYESLSGPSERRAYD 517
            +E     P+WYAVLGI  R A A+ +K++F++  L +HPDK +S  A +AF+LV EA+  LS PS R+AYD
Sbjct:   50 QEKTNGGPDWYAVLGIRDRNADAEAIKNAFKKRALKVHPDKNSSAAADDAFKLVSEAWRVLSEPSSRQAYD 120          
BLAST of NO20G01970 vs. NCBI_GenBank
Match: EYU33449.1 (hypothetical protein MIMGU_mgv1a002004mg [Erythranthe guttata])

HSP 1 Score: 72.8 bits (177), Expect = 3.900e-9
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0
Query:  453 DPNWYAVLGISRRASAQTVKDSFRRLVLLIHPDKTASRGAQEAFQLVQEAYESLSGPSERRAYDL 518
            + NWY VLG++  A  +T++  +R+L LL+HPDK  S GA+ AFQLV +A+  LS  S+R AYDL
Sbjct:   65 ESNWYGVLGLTPLADDETIRKQYRKLALLLHPDKNRSIGAEGAFQLVSQAWSLLSDKSKRAAYDL 129          
BLAST of NO20G01970 vs. NCBI_GenBank
Match: XP_012842141.1 (PREDICTED: uncharacterized protein LOC105962385 [Erythranthe guttata])

HSP 1 Score: 72.8 bits (177), Expect = 3.900e-9
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0
Query:  453 DPNWYAVLGISRRASAQTVKDSFRRLVLLIHPDKTASRGAQEAFQLVQEAYESLSGPSERRAYDL 518
            + NWY VLG++  A  +T++  +R+L LL+HPDK  S GA+ AFQLV +A+  LS  S+R AYDL
Sbjct:   65 ESNWYGVLGLTPLADDETIRKQYRKLALLLHPDKNRSIGAEGAFQLVSQAWSLLSDKSKRAAYDL 129          
BLAST of NO20G01970 vs. NCBI_GenBank
Match: XP_020589495.1 (uncharacterized protein LOC110030878 [Phalaenopsis equestris] >XP_020589496.1 uncharacterized protein LOC110030878 [Phalaenopsis equestris])

HSP 1 Score: 72.8 bits (177), Expect = 3.900e-9
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 0
Query:  449 GEKDDPNWYAVLGISRRASAQTVKDSFRRLVLLIHPDKTASRGAQEAFQLVQEAYESLSGPSERRAYDL 518
            GEKD   WY +L ++  A  +TVK+ +R+L L++HPDK  S GA+ AFQLV EA+  LS  +++ AYDL
Sbjct:   63 GEKD---WYGILRVNASADEETVKNHYRKLALMLHPDKNKSAGAEGAFQLVSEAWSVLSNKNQKMAYDL 128          
BLAST of NO20G01970 vs. NCBI_GenBank
Match: PSN49798.1 (DnaJ subfamily B member 9 [Blattella germanica])

HSP 1 Score: 72.0 bits (175), Expect = 6.600e-9
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 0
Query:  447 REGEKDDPNWYAVLGISRRASAQTVKDSFRRLVLLIHPDKTASRGAQEAFQLVQEAYESLSGPSERRAYDLY 519
            RE +KD   +YA+LG+SR+A+ + +K SFR+L +  HPDK   +GA++ FQ + EAYE LS P +R+ YD +
Sbjct:   22 REEKKD---YYALLGVSRKATDREIKKSFRKLAIKYHPDKNKEKGAEKKFQELAEAYEVLSDPDKRKKYDQF 90          
BLAST of NO20G01970 vs. NCBI_GenBank
Match: XP_007781841.1 (hypothetical protein W97_05769 [Coniosporium apollinis CBS 100218] >EON66524.1 hypothetical protein W97_05769 [Coniosporium apollinis CBS 100218])

HSP 1 Score: 71.6 bits (174), Expect = 8.700e-9
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 0
Query:  455 NWYAVLGISRRASAQTVKDSFRRLVLLIHPDKTASRG-AQEAFQLVQEAYESLSGPSERRAYDLYLVKLRTKHWKQR 531
            ++YAVL +S  A  +T+K SFRRL  L+HPDK   +  A  +FQL+Q AYE +S P +RR YD     +R + W Q+
Sbjct:    9 DYYAVLEVSNSADNETIKKSFRRLARLLHPDKNPGKATATASFQLLQRAYEIVSDPEQRRVYDTVWESIRDRLWAQQ 85          
BLAST of NO20G01970 vs. NCBI_GenBank
Match: KXS18462.1 (hypothetical protein M427DRAFT_53842 [Gonapodya prolifera JEL478])

HSP 1 Score: 71.6 bits (174), Expect = 8.700e-9
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0
Query:  434 LRDRTGKEIARILREGEKDDPNWYAVLGISRRASAQTVKDSFRRLVLLIHPDK----TASRGAQEAFQLVQEAYESLSGPSERRAYDLY 519
            L DR  +EIA          PN+YA+L + + AS Q V+D+++RL ++ HPDK     A   AQ  FQ +Q AY+ LS  ++R AYD+Y
Sbjct:   47 LEDRLDEEIA----GANTSSPNYYAILNLDKNASDQDVRDAYKRLSMIFHPDKHRDTAAKEAAQRKFQTIQRAYDVLSEGAKRTAYDMY 131          
BLAST of NO20G01970 vs. NCBI_GenBank
Match: XP_007199347.1 (uncharacterized protein LOC18767133 [Prunus persica] >XP_020425393.1 uncharacterized protein LOC18767133 [Prunus persica] >XP_020425394.1 uncharacterized protein LOC18767133 [Prunus persica] >XP_020425395.1 uncharacterized protein LOC18767133 [Prunus persica] >ONH91881.1 hypothetical protein PRUPE_8G141600 [Prunus persica] >ONH91882.1 hypothetical protein PRUPE_8G141600 [Prunus persica] >ONH91883.1 hypothetical protein PRUPE_8G141600 [Prunus persica] >ONH91884.1 hypothetical protein PRUPE_8G141600 [Prunus persica] >ONH91885.1 hypothetical protein PRUPE_8G141600 [Prunus persica] >ONH91886.1 hypothetical protein PRUPE_8G141600 [Prunus persica])

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-8
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 0
Query:  444 RILREGEK-DDPNWYAVLGISRRASAQTVKDSFRRLVLLIHPDKTASRGAQEAFQLVQEAYESLSGPSERRAYDLYL 520
            +ILR   K  DPNWY +L +   A   T+K ++++L  L+HPDK    G++EAF+LV EA+  LS   +R+ YD+ L
Sbjct:   54 KILRTASKTPDPNWYKILQVEPFAHTNTIKKNYKKLAFLLHPDKNPHAGSEEAFKLVSEAFRFLSDKLKRKEYDMRL 130          
BLAST of NO20G01970 vs. NCBI_GenBank
Match: XP_004975834.1 (uncharacterized protein LOC101771020 isoform X1 [Setaria italica])

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-8
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  449 GEKDDPNWYAVLGISRRASAQTVKDSFRRLVLLIHPDKTASRGAQEAFQLVQEAYESLSGPSERRAYD 517
            GEKD   WY++L ++  A  +T+K  +R+LVLL+HPDK    GA+ AFQ+V+EAY  LS  ++R  YD
Sbjct:   63 GEKD---WYSILSVTTAADDETIKKQYRKLVLLLHPDKNKQVGAEGAFQMVKEAYTVLSDKTKRAVYD 127          
The following BLAST results are available for this feature:
BLAST of NO20G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22061.16.700e-7864.45chaperone -domain containing protein [Nannochlorop... [more]
EOY30211.12.300e-949.30Uncharacterized protein TCM_037493 [Theobroma caca... [more]
EYU33449.13.900e-950.77hypothetical protein MIMGU_mgv1a002004mg [Erythran... [more]
XP_012842141.13.900e-950.77PREDICTED: uncharacterized protein LOC105962385 [E... [more]
XP_020589495.13.900e-949.28uncharacterized protein LOC110030878 [Phalaenopsis... [more]
PSN49798.16.600e-947.22DnaJ subfamily B member 9 [Blattella germanica][more]
XP_007781841.18.700e-945.45hypothetical protein W97_05769 [Coniosporium apoll... [more]
KXS18462.18.700e-941.57hypothetical protein M427DRAFT_53842 [Gonapodya pr... [more]
XP_007199347.11.100e-842.86uncharacterized protein LOC18767133 [Prunus persic... [more]
XP_004975834.11.100e-848.53uncharacterized protein LOC101771020 isoform X1 [S... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002736NSK002736Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01970.1NO20G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594951gene_6417Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100052g27gene8396Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01970.1NO20G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01970 ID=NO20G01970|Name=NO20G01970|organism=Nannochloropsis oceanica|type=gene|length=1704bp
ATGGAGCAAGTAAAAGCAAGCCCAGCCTCTCCATTACATCTTACCCCGCA
GAGCGTAACAAACGCTACTATCCTGCAGGTGAATGAGACACTGCCACTCC
ACCAACAGGAGAAGAATGAGGAGGACCATAATGTGCTGTTAGAAGCAAGC
GAGGTGCAGGATCTTGCGGAGGAGGTCATCCTATCGCAAAGAGAGCAAAA
AGAAGACCTGCACGAGCCGCAAGAGCACGATGTGGAGCAAGAGCCGCGAA
GGAAGGGGCAGAAAGAGCAGCAGCCACCACACGAGGTACAAGGGGCTAAA
ATCCAAGAAGAGCAGCAACCGCCATGGCAGCAGAAGCTTTCGCAAGAGCA
GCAACCGCCGCCCACAGAACTAGAGGCGCAGGATGCACAAGTGGAAGGTA
CGCTGCAGCAGCATGATGTCCCGTTTGAGGAGGGTTCTGTCATCTTTGAG
GAAGGCGTGTCAATGCAGATCAGTGAAGAAGCCGTGAAGGAGGCGGGTTT
GAAGGAGGAGGAGAACCCACACAAGGAGAAGAACCATGACATGGAAATTA
TAAATGAGGAGGATGAGGAGGAGCACGAGGCGGCAGAGCGAGACTCGCTA
GAGGAAATCAAGGCCGTCATCGAAGCGCAAGCCGAGGAAGATCGTCGGTT
GTCTGAAGATGCGGCATTAGATGAAGCCCGGGCGCACGCGGCGGAGCGAG
AGGCGGTGCGACAAGAGGCAGAAGAGAAACGGCAGACGCGAATAAGGGCC
GCTGAAGCCCATGCGGGCGCCGCGAGCTGGGGCCGCGAGCCAAGACAAGG
GGACAGCCGCGGCAGCAGCAGCAGCAGCAGCAATGGAGATTCAGGCAATA
TCAGTGGCAGTGGGAATCGGGGGAATGCTTTCGCTGCCTTGTCTGGCGGC
GGTTCTGGTGGAGTCTTTTCGAGGGTGGGTGGATTGGGCCGGGCCTCTCA
TGCAGGCTCCTCCGCCTCCTCCACCCCTTTCACACGCCGCGGCCGCGTCC
CACCCACCGATGAGCATGCTCAAGCGGAAATGATGAGTGCTGCGTTTGGT
GGTGGGGCGGGCGGGCCTGGAACGATATCCTTTGAGGATATGATGACGCA
GCAAGAGAGAAGCATGCACGGGGGCAGTGGGGACGAGAGTGCGACAGTGC
GGGCTCGGCTAGCGGCTAAATTGGTGTTGGAGACGGACGCACTTCTTTAT
GGTGGGCAAGGCGGGTCTGGGGGCGCTGGGTTGGAGATAGGTGATGACGA
CCCGGAGGAGGAAGAGGGAGGGATGATTGAGGGGAAGAAGGCAGCGCTGT
TGCGGGACCGGACGGGCAAGGAAATTGCACGGATCCTGCGAGAAGGGGAG
AAGGATGACCCGAATTGGTATGCCGTACTGGGCATCTCTCGGCGAGCATC
GGCACAGACTGTTAAGGACAGCTTCCGACGGCTGGTGTTGCTCATTCATC
CGGACAAGACAGCGAGCCGCGGGGCACAGGAGGCGTTCCAGCTGGTGCAA
GAAGCCTATGAGAGCCTTTCTGGCCCAAGCGAGCGCCGGGCCTACGACTT
GTACCTGGTCAAGTTGCGGACCAAGCACTGGAAGCAGCGTATCCGTCCTC
TCAAAGACAAGCTGGACGAGCTCTCAGATTACTACGAGCCGGTCCTCGAG
CGGAAAGGCAAGATTGCCCTCGGTGCATTCTTAGTGTGGGCCTTGGTTTT
GTAG
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protein sequence of NO20G01970.1

>NO20G01970.1-protein ID=NO20G01970.1-protein|Name=NO20G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MEQVKASPASPLHLTPQSVTNATILQVNETLPLHQQEKNEEDHNVLLEAS
EVQDLAEEVILSQREQKEDLHEPQEHDVEQEPRRKGQKEQQPPHEVQGAK
IQEEQQPPWQQKLSQEQQPPPTELEAQDAQVEGTLQQHDVPFEEGSVIFE
EGVSMQISEEAVKEAGLKEEENPHKEKNHDMEIINEEDEEEHEAAERDSL
EEIKAVIEAQAEEDRRLSEDAALDEARAHAAEREAVRQEAEEKRQTRIRA
AEAHAGAASWGREPRQGDSRGSSSSSSNGDSGNISGSGNRGNAFAALSGG
GSGGVFSRVGGLGRASHAGSSASSTPFTRRGRVPPTDEHAQAEMMSAAFG
GGAGGPGTISFEDMMTQQERSMHGGSGDESATVRARLAAKLVLETDALLY
GGQGGSGGAGLEIGDDDPEEEEGGMIEGKKAALLRDRTGKEIARILREGE
KDDPNWYAVLGISRRASAQTVKDSFRRLVLLIHPDKTASRGAQEAFQLVQ
EAYESLSGPSERRAYDLYLVKLRTKHWKQRIRPLKDKLDELSDYYEPVLE
RKGKIALGAFLVWALVL*
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Synonyms
Publications