NO20G01970.1, NO20G01970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01970.1
Unique NameNO20G01970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1704
Alignment locationchr20:584364..586067 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:584364..586067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01970.1 vs.
Match: EWM22061.1 (chaperone -domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 363.6 bits (932), Expect = 1.100e-96
Identity = 242/405 (59.75%), Postives = 288/405 (71.11%), Query Frame = 0 
Query:  177 KNHDME-IINEEDEEEHE--------AAERDSLEEIKAVIEAQAEEDRRLSEDAALDEARAHAAEREAVRQEAEEKRQTRIRAAEAHAGAASWGREPRQGDSRGSSSSSSNGDSGNISGSGNRGNAFAALSGGGSGGVFSRVGGLGRA-SHAGSSASSTPF-TRRGRVPPTDEHAQAEMMSAAFGGGAGGPGTISFEDMMTQQERSMHGGSGDESATVRARLAAKLVLETDALLYGGQGGSGGAGL---EIGDDDPEEEEGGMIEGKKAALLRDRTGKEIARILREGEKDDPNWYAVLGISRRASAQTVKDSFRRLVLLIHPDKTASRGAQEAFQLVQEAYESLSGPSERRAYDLYLVKLRTKHWKQRIRPLKDKLDELSDYYEPVLERKGKIALGAFLVWALVL 568
            +  D+E II  EDEEE E        AAE DS+ EI+ +IEAQAEE+RRL+E+AA DEARAHAAEREAVRQEAEEK +TR +A + +   A   ++  +  +R S S SS  D G   GSG+R +  +AL+G  S      V GLG+  S+ G+++  + F  +RGRVPPT + AQAEMMSAAFG   G     SFE+M +Q +      +G+E+ T RA LAAKLVLETDALLYGG GG  GA L   E GD+D E  EG    G K  L++DRT KEI RILREGE+++PNWY VLGISRRA AQ VKDSFRRLVLLIHPDKT+  GAQEAFQLVQEAYESLS P ER AYD YLVKLR K WKQR+RPL DK+DE SDYYEP+LERKG+IA  AFL+WALVL
Sbjct:  131 EQRDIEGIIRSEDEEEEEKIGSVMYNAAEEDSMAEIRGLIEAQAEEERRLAEEAAFDEARAHAAEREAVRQEAEEKVRTRRQARDDNLFEAFKEQQWAEPMAR-SRSGSSAADPGIDGGSGHR-DGVSALAGRTSHRPRGHVLGLGQGTSNRGTTSRFSSFHAQRGRVPPTSDEAQAEMMSAAFGSVRG---KASFEEMNSQHQGGTVDRTGEENGTARAHLAAKLVLETDALLYGGHGGPVGATLLEVEGGDEDWENGEGAGSAGMKNVLVKDRTSKEIQRILREGEREEPNWYVVLGISRRAQAQAVKDSFRRLVLLIHPDKTSHLGAQEAFQLVQEAYESLSSPIERLAYDQYLVKLRAKRWKQRLRPLVDKVDEFSDYYEPILERKGQIAAAAFLLWALVL 530
The following BLAST results are available for this feature:
BLAST of NO20G01970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22061.11.100e-9659.75chaperone -domain containing protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01970NO20G01970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01970.1NO20G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01970.1.cds1NO20G01970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01970.1 ID=NO20G01970.1|Name=NO20G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp
ATGGAGCAAGTAAAAGCAAGCCCAGCCTCTCCATTACATCTTACCCCGCA
GAGCGTAACAAACGCTACTATCCTGCAGGTGAATGAGACACTGCCACTCC
ACCAACAGGAGAAGAATGAGGAGGACCATAATGTGCTGTTAGAAGCAAGC
GAGGTGCAGGATCTTGCGGAGGAGGTCATCCTATCGCAAAGAGAGCAAAA
AGAAGACCTGCACGAGCCGCAAGAGCACGATGTGGAGCAAGAGCCGCGAA
GGAAGGGGCAGAAAGAGCAGCAGCCACCACACGAGGTACAAGGGGCTAAA
ATCCAAGAAGAGCAGCAACCGCCATGGCAGCAGAAGCTTTCGCAAGAGCA
GCAACCGCCGCCCACAGAACTAGAGGCGCAGGATGCACAAGTGGAAGGTA
CGCTGCAGCAGCATGATGTCCCGTTTGAGGAGGGTTCTGTCATCTTTGAG
GAAGGCGTGTCAATGCAGATCAGTGAAGAAGCCGTGAAGGAGGCGGGTTT
GAAGGAGGAGGAGAACCCACACAAGGAGAAGAACCATGACATGGAAATTA
TAAATGAGGAGGATGAGGAGGAGCACGAGGCGGCAGAGCGAGACTCGCTA
GAGGAAATCAAGGCCGTCATCGAAGCGCAAGCCGAGGAAGATCGTCGGTT
GTCTGAAGATGCGGCATTAGATGAAGCCCGGGCGCACGCGGCGGAGCGAG
AGGCGGTGCGACAAGAGGCAGAAGAGAAACGGCAGACGCGAATAAGGGCC
GCTGAAGCCCATGCGGGCGCCGCGAGCTGGGGCCGCGAGCCAAGACAAGG
GGACAGCCGCGGCAGCAGCAGCAGCAGCAGCAATGGAGATTCAGGCAATA
TCAGTGGCAGTGGGAATCGGGGGAATGCTTTCGCTGCCTTGTCTGGCGGC
GGTTCTGGTGGAGTCTTTTCGAGGGTGGGTGGATTGGGCCGGGCCTCTCA
TGCAGGCTCCTCCGCCTCCTCCACCCCTTTCACACGCCGCGGCCGCGTCC
CACCCACCGATGAGCATGCTCAAGCGGAAATGATGAGTGCTGCGTTTGGT
GGTGGGGCGGGCGGGCCTGGAACGATATCCTTTGAGGATATGATGACGCA
GCAAGAGAGAAGCATGCACGGGGGCAGTGGGGACGAGAGTGCGACAGTGC
GGGCTCGGCTAGCGGCTAAATTGGTGTTGGAGACGGACGCACTTCTTTAT
GGTGGGCAAGGCGGGTCTGGGGGCGCTGGGTTGGAGATAGGTGATGACGA
CCCGGAGGAGGAAGAGGGAGGGATGATTGAGGGGAAGAAGGCAGCGCTGT
TGCGGGACCGGACGGGCAAGGAAATTGCACGGATCCTGCGAGAAGGGGAG
AAGGATGACCCGAATTGGTATGCCGTACTGGGCATCTCTCGGCGAGCATC
GGCACAGACTGTTAAGGACAGCTTCCGACGGCTGGTGTTGCTCATTCATC
CGGACAAGACAGCGAGCCGCGGGGCACAGGAGGCGTTCCAGCTGGTGCAA
GAAGCCTATGAGAGCCTTTCTGGCCCAAGCGAGCGCCGGGCCTACGACTT
GTACCTGGTCAAGTTGCGGACCAAGCACTGGAAGCAGCGTATCCGTCCTC
TCAAAGACAAGCTGGACGAGCTCTCAGATTACTACGAGCCGGTCCTCGAG
CGGAAAGGCAAGATTGCCCTCGGTGCATTCTTAGTGTGGGCCTTGGTTTT
GTAG
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protein sequence of NO20G01970.1

>NO20G01970.1-protein ID=NO20G01970.1-protein|Name=NO20G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MEQVKASPASPLHLTPQSVTNATILQVNETLPLHQQEKNEEDHNVLLEAS
EVQDLAEEVILSQREQKEDLHEPQEHDVEQEPRRKGQKEQQPPHEVQGAK
IQEEQQPPWQQKLSQEQQPPPTELEAQDAQVEGTLQQHDVPFEEGSVIFE
EGVSMQISEEAVKEAGLKEEENPHKEKNHDMEIINEEDEEEHEAAERDSL
EEIKAVIEAQAEEDRRLSEDAALDEARAHAAEREAVRQEAEEKRQTRIRA
AEAHAGAASWGREPRQGDSRGSSSSSSNGDSGNISGSGNRGNAFAALSGG
GSGGVFSRVGGLGRASHAGSSASSTPFTRRGRVPPTDEHAQAEMMSAAFG
GGAGGPGTISFEDMMTQQERSMHGGSGDESATVRARLAAKLVLETDALLY
GGQGGSGGAGLEIGDDDPEEEEGGMIEGKKAALLRDRTGKEIARILREGE
KDDPNWYAVLGISRRASAQTVKDSFRRLVLLIHPDKTASRGAQEAFQLVQ
EAYESLSGPSERRAYDLYLVKLRTKHWKQRIRPLKDKLDELSDYYEPVLE
RKGKIALGAFLVWALVL*
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mRNA from alignment at chr20:584364..586067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01970.1 ID=NO20G01970.1|Name=NO20G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at chr20:584364..586067- (Nannochloropsis oceanica)
ATGGAGCAAGTAAAAGCAAGCCCAGCCTCTCCATTACATCTTACCCCGCA
GAGCGTAACAAACGCTACTATCCTGCAGGTGAATGAGACACTGCCACTCC
ACCAACAGGAGAAGAATGAGGAGGACCATAATGTGCTGTTAGAAGCAAGC
GAGGTGCAGGATCTTGCGGAGGAGGTCATCCTATCGCAAAGAGAGCAAAA
AGAAGACCTGCACGAGCCGCAAGAGCACGATGTGGAGCAAGAGCCGCGAA
GGAAGGGGCAGAAAGAGCAGCAGCCACCACACGAGGTACAAGGGGCTAAA
ATCCAAGAAGAGCAGCAACCGCCATGGCAGCAGAAGCTTTCGCAAGAGCA
GCAACCGCCGCCCACAGAACTAGAGGCGCAGGATGCACAAGTGGAAGGTA
CGCTGCAGCAGCATGATGTCCCGTTTGAGGAGGGTTCTGTCATCTTTGAG
GAAGGCGTGTCAATGCAGATCAGTGAAGAAGCCGTGAAGGAGGCGGGTTT
GAAGGAGGAGGAGAACCCACACAAGGAGAAGAACCATGACATGGAAATTA
TAAATGAGGAGGATGAGGAGGAGCACGAGGCGGCAGAGCGAGACTCGCTA
GAGGAAATCAAGGCCGTCATCGAAGCGCAAGCCGAGGAAGATCGTCGGTT
GTCTGAAGATGCGGCATTAGATGAAGCCCGGGCGCACGCGGCGGAGCGAG
AGGCGGTGCGACAAGAGGCAGAAGAGAAACGGCAGACGCGAATAAGGGCC
GCTGAAGCCCATGCGGGCGCCGCGAGCTGGGGCCGCGAGCCAAGACAAGG
GGACAGCCGCGGCAGCAGCAGCAGCAGCAGCAATGGAGATTCAGGCAATA
TCAGTGGCAGTGGGAATCGGGGGAATGCTTTCGCTGCCTTGTCTGGCGGC
GGTTCTGGTGGAGTCTTTTCGAGGGTGGGTGGATTGGGCCGGGCCTCTCA
TGCAGGCTCCTCCGCCTCCTCCACCCCTTTCACACGCCGCGGCCGCGTCC
CACCCACCGATGAGCATGCTCAAGCGGAAATGATGAGTGCTGCGTTTGGT
GGTGGGGCGGGCGGGCCTGGAACGATATCCTTTGAGGATATGATGACGCA
GCAAGAGAGAAGCATGCACGGGGGCAGTGGGGACGAGAGTGCGACAGTGC
GGGCTCGGCTAGCGGCTAAATTGGTGTTGGAGACGGACGCACTTCTTTAT
GGTGGGCAAGGCGGGTCTGGGGGCGCTGGGTTGGAGATAGGTGATGACGA
CCCGGAGGAGGAAGAGGGAGGGATGATTGAGGGGAAGAAGGCAGCGCTGT
TGCGGGACCGGACGGGCAAGGAAATTGCACGGATCCTGCGAGAAGGGGAG
AAGGATGACCCGAATTGGTATGCCGTACTGGGCATCTCTCGGCGAGCATC
GGCACAGACTGTTAAGGACAGCTTCCGACGGCTGGTGTTGCTCATTCATC
CGGACAAGACAGCGAGCCGCGGGGCACAGGAGGCGTTCCAGCTGGTGCAA
GAAGCCTATGAGAGCCTTTCTGGCCCAAGCGAGCGCCGGGCCTACGACTT
GTACCTGGTCAAGTTGCGGACCAAGCACTGGAAGCAGCGTATCCGTCCTC
TCAAAGACAAGCTGGACGAGCTCTCAGATTACTACGAGCCGGTCCTCGAG
CGGAAAGGCAAGATTGCCCTCGGTGCATTCTTAGTGTGGGCCTTGGTTTT
GTAG
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Coding sequence (CDS) from alignment at chr20:584364..586067-

>NO20G01970.1 ID=NO20G01970.1|Name=NO20G01970.1|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at chr20:584364..586067- (Nannochloropsis oceanica)
ATGGAGCAAGTAAAAGCAAGCCCAGCCTCTCCATTACATCTTACCCCGCA
GAGCGTAACAAACGCTACTATCCTGCAGGTGAATGAGACACTGCCACTCC
ACCAACAGGAGAAGAATGAGGAGGACCATAATGTGCTGTTAGAAGCAAGC
GAGGTGCAGGATCTTGCGGAGGAGGTCATCCTATCGCAAAGAGAGCAAAA
AGAAGACCTGCACGAGCCGCAAGAGCACGATGTGGAGCAAGAGCCGCGAA
GGAAGGGGCAGAAAGAGCAGCAGCCACCACACGAGGTACAAGGGGCTAAA
ATCCAAGAAGAGCAGCAACCGCCATGGCAGCAGAAGCTTTCGCAAGAGCA
GCAACCGCCGCCCACAGAACTAGAGGCGCAGGATGCACAAGTGGAAGGTA
CGCTGCAGCAGCATGATGTCCCGTTTGAGGAGGGTTCTGTCATCTTTGAG
GAAGGCGTGTCAATGCAGATCAGTGAAGAAGCCGTGAAGGAGGCGGGTTT
GAAGGAGGAGGAGAACCCACACAAGGAGAAGAACCATGACATGGAAATTA
TAAATGAGGAGGATGAGGAGGAGCACGAGGCGGCAGAGCGAGACTCGCTA
GAGGAAATCAAGGCCGTCATCGAAGCGCAAGCCGAGGAAGATCGTCGGTT
GTCTGAAGATGCGGCATTAGATGAAGCCCGGGCGCACGCGGCGGAGCGAG
AGGCGGTGCGACAAGAGGCAGAAGAGAAACGGCAGACGCGAATAAGGGCC
GCTGAAGCCCATGCGGGCGCCGCGAGCTGGGGCCGCGAGCCAAGACAAGG
GGACAGCCGCGGCAGCAGCAGCAGCAGCAGCAATGGAGATTCAGGCAATA
TCAGTGGCAGTGGGAATCGGGGGAATGCTTTCGCTGCCTTGTCTGGCGGC
GGTTCTGGTGGAGTCTTTTCGAGGGTGGGTGGATTGGGCCGGGCCTCTCA
TGCAGGCTCCTCCGCCTCCTCCACCCCTTTCACACGCCGCGGCCGCGTCC
CACCCACCGATGAGCATGCTCAAGCGGAAATGATGAGTGCTGCGTTTGGT
GGTGGGGCGGGCGGGCCTGGAACGATATCCTTTGAGGATATGATGACGCA
GCAAGAGAGAAGCATGCACGGGGGCAGTGGGGACGAGAGTGCGACAGTGC
GGGCTCGGCTAGCGGCTAAATTGGTGTTGGAGACGGACGCACTTCTTTAT
GGTGGGCAAGGCGGGTCTGGGGGCGCTGGGTTGGAGATAGGTGATGACGA
CCCGGAGGAGGAAGAGGGAGGGATGATTGAGGGGAAGAAGGCAGCGCTGT
TGCGGGACCGGACGGGCAAGGAAATTGCACGGATCCTGCGAGAAGGGGAG
AAGGATGACCCGAATTGGTATGCCGTACTGGGCATCTCTCGGCGAGCATC
GGCACAGACTGTTAAGGACAGCTTCCGACGGCTGGTGTTGCTCATTCATC
CGGACAAGACAGCGAGCCGCGGGGCACAGGAGGCGTTCCAGCTGGTGCAA
GAAGCCTATGAGAGCCTTTCTGGCCCAAGCGAGCGCCGGGCCTACGACTT
GTACCTGGTCAAGTTGCGGACCAAGCACTGGAAGCAGCGTATCCGTCCTC
TCAAAGACAAGCTGGACGAGCTCTCAGATTACTACGAGCCGGTCCTCGAG
CGGAAAGGCAAGATTGCCCTCGGTGCATTCTTAGTGTGGGCCTTGGTTTT
GTAG
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Synonyms
Publications