NO20G01900, NO20G01900 (gene) Nannochloropsis oceanica

Overview
NameNO20G01900
Unique NameNO20G01900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2049
Alignment locationchr20:570449..572632 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:570449..572632 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G01900 vs. NCBI_GenBank
Match: EWM22029.1 (hypothetical protein Naga_100052g20 [Nannochloropsis gaditana])

HSP 1 Score: 219.5 bits (558), Expect = 1.900e-53
Identity = 105/164 (64.02%), Postives = 131/164 (79.88%), Query Frame = 0 
Query:  214 PPSNRSPAAVTARKLADWDREHVPSLAAAEQLVEGIRQHLSYRYYPLKVFLDQIPDTVTARDLFQIFAGLSGNGEVEAVVVLEAMRARRRRQGTDDLQETGPRTAIIQLGDKATYDRALSDDVRMFGICWQRHLYKPTRGLGRNLFFTLSSGEYSVQDMAGKGL 378
            P S+ SPAA+   K+A WD  + PSLAAAE LVE +RQ+LSYRY+  KVFLD IPDT++ARD+  IFAGL G  +++AV++LEA+RAR RR   + ++E GPRTAIIQ G ++TYDR LS+DVR+FGICWQRH YKPTRG GRNLFFTL SGEY++ DMAGK +
Sbjct:  210 PISDYSPAALAGNKMAAWDIAYTPSLAAAEHLVEEVRQNLSYRYHAQKVFLDYIPDTISARDVGLIFAGLDGTRDIDAVIILEAIRARERRP-RNAVREGGPRTAIIQFGSRSTYDRVLSEDVRIFGICWQRHTYKPTRGPGRNLFFTLCSGEYTILDMAGKAV 372
The following BLAST results are available for this feature:
BLAST of NO20G01900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22029.11.900e-5364.02hypothetical protein Naga_100052g20 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002729NSK002729Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01900.2NO20G01900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G01900.1NO20G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|92716gene_6410Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100052g20gene8389Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01900.2NO20G01900.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G01900.1NO20G01900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01900 ID=NO20G01900|Name=NO20G01900|organism=Nannochloropsis oceanica|type=gene|length=2049bp
ATGTACCGGCTCGTCCACCGCACACACATCCCGTGGGCTCGAAGTATCCG
TCATGCTGCCAGTTCCGCTCCTGTCGCCCCCTCCTCCTCCTCGACATACT
CCGGCTTACCCAAGAAGTTATCAATTACATCATCTGGACGGCCATCATTT
CAATgtaggtttcgtattggatgtggcagggcgaaagtggctgagtttca
aaggaagaccacaaagacccacctgacgtcttcctcccttctaccctgca
cccaaagGCTTTTTGACACAAGAGAAACAAAGGCGAACTTTTGCAAGCGG
TCCAGCGTTTATTATCGACGATCTCACCCTTTCCTTGCCACCATTGCGAC
CGCCAGAGCTGTCCACTCCAAGCCGGCTTGCTGATACCGCAGCCCACGGT
GGATCCCCCAAGCATCGCCGTAGGAAAAAGGCGGCGCCGACTGATGAAGC
AGCTTCAGGTGTGGAAAATCCTACTTATGTCTCGCCATTGGATGCACCTC
CTAAAAAAACTCCGTCTTTGCGCCGGCGACGGAAAGTGTCGACAGCATCA
TCGCCATCCCCGGATGCCAGCGCCGTCCCTTGTCCTCCTCTTTCTCCTCT
ACCTTCTCGCCCACGGATCGACAATGTCAACGAAGAAGCCTACGTCACCA
CTACTGACTCTATATCCGAACCCACGTTGCTCGAAAATAGGAAGAAGCAA
AAGGAGAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAACTACCACCTTC
CAACCGTTCGCCCGCCGCCGTGACCGCCCGTAAATTGGCGGACTGGGACA
GGGAGCATGTGCCCAGCCTGGCGGCAGCTGAGCAGCTCGTAGAAGGGATT
CGGCAGCACTTGTCATACCGGTACTACCCACTCAAGGTCTTTCTAGATCA
AATCCCAGACACGGTCACAGCACGAGACCTGTTTCAGATATTCGCGGGTT
TGAGTGGGAATGGCGAGGTGGAGGCAGTGGTAGTGTTGGAGGCAATGCGA
GCAAGGAGAAGGCGACAAGGGACGGATGATTTGCAGGAAACAGGACCGAG
AACGGGTACGTTGCCATTGAAGGAATACATGCGCCCGTGATCAAGCTGCC
AAGAAAGGCCTGAACAGACTCTCACACGCGCATCACTCCTTTCACTCAAA
CACATAGCGATCATCCAGCTTGGTGACAAAGCCACCTACGACCGGGCCCT
GAGCGACGATGTACGGATGTTTGGCATCTGCTGGCAGgtaggcaacaggg
aactttacagggcgggtgatgaaaggaaggtgtgtctttagatcgattgg
gacataatgactcctctatgtaatacacacaccccacttcacagCGGCAT
CTTTATAAGCCCACGCGAGGACTGGGCCGGAATCTCTTCTTCACACTCTC
TTCGGGTGAGTACAGTGTCCAAGACATGGCTGGCAAGGGGCTGAGTGTGC
CACCACCACCGCCGCTTGAGGAACTGAGCATCTCCTTTTTGAAAGAGGTT
GGAGAAAGCTGTGACGAGGAAGGAGAGGAGGGCGGGACTGCCCAACACTA
GACTGGCGCTGATGCCCAACAAATGCTTGCACACGTGGTATTAAACCAAC
CAGCCGGTGAAGTGGGGGGACAGGGAAGAGGGTGGGCGAAGGCACGGGCA
AGGGAAAATTGAGGAAAGATTGTACTCGTCGAAAGAAAAAAAATAGAGCT
CAAAGCATGTGGATAACAACCAGATACTAGGGTGGAGAGGCGCGGGAATT
TCATGTTTTCTACCATCCAGTTTATTTGTTGTTGCCCGAGGATGAATCGA
TTTGTGGCATTGAGCCCGTAGTCTACGTATCGAGTGGCCGTGGCCGTTCT
ATGATACTTTCCTCCGGCACTGCAGGCACATCCATGCAACGCGATGTAAT
ATGTGACCATAGTCAGATTTGGTGTGCTAAAATAGGCGCATTTTCACCCT
GCATACACCTCCCACCGGACGTATTGCTGTACAGTTACAACACCATACTA
ACCAGAATGACAGCTGCTCACAACAGGCTCACAACGGCGGAATTCGCCG
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protein sequence of NO20G01900.2

>NO20G01900.2-protein ID=NO20G01900.2-protein|Name=NO20G01900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MYRLVHRTHIPWARSIRHAASSAPVAPSSSSTYSGLPKKLSITSSGRPSF
QCFLTQEKQRRTFASGPAFIIDDLTLSLPPLRPPELSTPSRLADTAAHGG
SPKHRRRKKAAPTDEAASGVENPTYVSPLDAPPKKTPSLRRRRKVSTASS
PSPDASAVPCPPLSPLPSRPRIDNVNEEAYVTTTDSISEPTLLENRKKQK
EKKEKKEKKEKKLPPSNRSPAAVTARKLADWDREHVPSLAAAEQLVEGIR
QHLSYRYYPLKVFLDQIPDTVTARDLFQIFAGLSGNGEVEAVVVLEAMRA
RRRRQGTDDLQETGPRTAIIQLGDKATYDRALSDDVRMFGICWQRHLYKP
TRGLGRNLFFTLSSGEYSVQDMAGKGLSVPPPPPLEELSISFLKEVGESC
DEEGEEGGTAQH*
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protein sequence of NO20G01900.1

>NO20G01900.1-protein ID=NO20G01900.1-protein|Name=NO20G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MYRLVHRTHIPWARSIRHAASSAPVAPSSSSTYSGLPKKLSITSSGRPSF
QCFLTQEKQRRTFASGPAFIIDDLTLSLPPLRPPELSTPSRLADTAAHGG
SPKHRRRKKAAPTDEAASGVENPTYVSPLDAPPKKTPSLRRRRKVSTASS
PSPDASAVPCPPLSPLPSRPRIDNVNEEAYVTTTDSISEPTLLENRKKQK
EKKEKKEKKEKKLPPSNRSPAAVTARKLADWDREHVPSLAAAEQLVEGIR
QHLSYRYYPLKVFLDQIPDTVTARDLFQIFAGLSGNGEVEAVVVLEAMRA
RRRRQGTDDLQETGPRTGTLPLKEYMRP*
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Synonyms
Publications