NO20G01900.2, NO20G01900.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01900.2
Unique NameNO20G01900.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1872
Alignment locationchr20:570449..572632 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:570449..572632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO20G01900.2 vs.
Match: EWM22029.1 (hypothetical protein Naga_100052g20 [Nannochloropsis gaditana])

HSP 1 Score: 220.7 bits (561), Expect = 8.400e-54
Identity = 152/333 (45.65%), Postives = 206/333 (61.86%), Query Frame = 0 
Query:   59 QRRTFASGPAFIIDDLTLSLPPLR---PPELST--PSRLADTAAHGGSP----KHRRRKKAAPTDEAASGVENPTYVSPLDAPPKKTPSLRRRRKVSTASSPSPDASAVPCPPLSPL--PSRPRIDNVNEEAYVTTTDSISEPT--LLENRKKQKEKKEKKEKK-EKKLPPSNRSPAAVTARKLADWDREHVPSLAAAEQLVEGIRQHLSYRYYPLKVFLDQIPDTVTARDLFQIFAGLSGNGEVEAVVVLEAMRARRRRQGTDDLQETGPRTAIIQLGDKATYDRALSDDVRMFGICWQRHLYKPTRGLGRNLFFTLSSGEYSVQDMAGKGL 378
            Q R  AS P  + D++   +PP+R    P +S+  PS  A  A     P    K  RR K A   E    VE     S     P+ T   +R+ +     +P   ++AV    L PL  P+    + ++ E  ++ ++++ +      +  K + EKKEK  +K EKKLP S+ SPAA+   K+A WD  + PSLAAAE LVE +RQ+LSYRY+  KVFLD IPDT++ARD+  IFAGL G  +++AV++LEA+RAR RR   + ++E GPRTAIIQ G ++TYDR LS+DVR+FGICWQRH YKPTRG GRNLFFTL SGEY++ DMAGK +
Sbjct:   57 QLRCLASLPEGVQDNI---IPPVRYTAAPRVSSSLPSGGALIADGKDQPQATQKKGRRGKGAIDRELEDIVEG----SDSQMTPQSTHGQKRKSR-----APVKASNAV----LEPLYHPTLRMSEELSTEGKLSGSETMRKGRRKAKDEEKSRGEKKEKNGRKNEKKLPISDYSPAALAGNKMAAWDIAYTPSLAAAEHLVEEVRQNLSYRYHAQKVFLDYIPDTISARDVGLIFAGLDGTRDIDAVIILEAIRARERRP-RNAVREGGPRTAIIQFGSRSTYDRVLSEDVRIFGICWQRHTYKPTRGPGRNLFFTLCSGEYTILDMAGKAV 372
The following BLAST results are available for this feature:
BLAST of NO20G01900.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22029.18.400e-5445.65hypothetical protein Naga_100052g20 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01900NO20G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01900.2NO20G01900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01900.2.cds1NO20G01900.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01900.2.cds2NO20G01900.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01900.2.cds3NO20G01900.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01900.2.cds4NO20G01900.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01900.2 ID=NO20G01900.2|Name=NO20G01900.2|organism=Nannochloropsis oceanica|type=mRNA|length=1872bp
CGGGCTTGTTCGACGGCTCCCGGGCTCTCTCCCCCTATTAATCCTATTTT
GAGTTCTTCTTTAACTCAAGACCCTCATCTGAAAACATAGTTAAGCAACA
TGTTCCTGTGAGACCTGTTTATTTTCTTCACCTCCATGTACCGGCTCGTC
CACCGCACACACATCCCGTGGGCTCGAAGTATCCGTCATGCTGCCAGTTC
CGCTCCTGTCGCCCCCTCCTCCTCCTCGACATACTCCGGCTTACCCAAGA
AGTTATCAATTACATCATCTGGACGGCCATCATTTCAATGCTTTTTGACA
CAAGAGAAACAAAGGCGAACTTTTGCAAGCGGTCCAGCGTTTATTATCGA
CGATCTCACCCTTTCCTTGCCACCATTGCGACCGCCAGAGCTGTCCACTC
CAAGCCGGCTTGCTGATACCGCAGCCCACGGTGGATCCCCCAAGCATCGC
CGTAGGAAAAAGGCGGCGCCGACTGATGAAGCAGCTTCAGGTGTGGAAAA
TCCTACTTATGTCTCGCCATTGGATGCACCTCCTAAAAAAACTCCGTCTT
TGCGCCGGCGACGGAAAGTGTCGACAGCATCATCGCCATCCCCGGATGCC
AGCGCCGTCCCTTGTCCTCCTCTTTCTCCTCTACCTTCTCGCCCACGGAT
CGACAATGTCAACGAAGAAGCCTACGTCACCACTACTGACTCTATATCCG
AACCCACGTTGCTCGAAAATAGGAAGAAGCAAAAGGAGAAGAAGGAGAAG
AAGGAGAAGAAGGAGAAGAAACTACCACCTTCCAACCGTTCGCCCGCCGC
CGTGACCGCCCGTAAATTGGCGGACTGGGACAGGGAGCATGTGCCCAGCC
TGGCGGCAGCTGAGCAGCTCGTAGAAGGGATTCGGCAGCACTTGTCATAC
CGGTACTACCCACTCAAGGTCTTTCTAGATCAAATCCCAGACACGGTCAC
AGCACGAGACCTGTTTCAGATATTCGCGGGTTTGAGTGGGAATGGCGAGG
TGGAGGCAGTGGTAGTGTTGGAGGCAATGCGAGCAAGGAGAAGGCGACAA
GGGACGGATGATTTGCAGGAAACAGGACCGAGAACGGCGATCATCCAGCT
TGGTGACAAAGCCACCTACGACCGGGCCCTGAGCGACGATGTACGGATGT
TTGGCATCTGCTGGCAGCGGCATCTTTATAAGCCCACGCGAGGACTGGGC
CGGAATCTCTTCTTCACACTCTCTTCGGGTGAGTACAGTGTCCAAGACAT
GGCTGGCAAGGGGCTGAGTGTGCCACCACCACCGCCGCTTGAGGAACTGA
GCATCTCCTTTTTGAAAGAGGTTGGAGAAAGCTGTGACGAGGAAGGAGAG
GAGGGCGGGACTGCCCAACACTAGACTGGCGCTGATGCCCAACAAATGCT
TGCACACGTGGTATTAAACCAACCAGCCGGTGAAGTGGGGGGACAGGGAA
GAGGGTGGGCGAAGGCACGGGCAAGGGAAAATTGAGGAAAGATTGTACTC
GTCGAAAGAAAAAAAATAGAGCTCAAAGCATGTGGATAACAACCAGATAC
TAGGGTGGAGAGGCGCGGGAATTTCATGTTTTCTACCATCCAGTTTATTT
GTTGTTGCCCGAGGATGAATCGATTTGTGGCATTGAGCCCGTAGTCTACG
TATCGAGTGGCCGTGGCCGTTCTATGATACTTTCCTCCGGCACTGCAGGC
ACATCCATGCAACGCGATGTAATATGTGACCATAGTCAGATTTGGTGTGC
TAAAATAGGCGCATTTTCACCCTGCATACACCTCCCACCGGACGTATTGC
TGTACAGTTACAACACCATACTAACCAGAATGACAGCTGCTCACAACAGG
CTCACAACGGCGGAATTCGCCG
back to top

protein sequence of NO20G01900.2

>NO20G01900.2-protein ID=NO20G01900.2-protein|Name=NO20G01900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MYRLVHRTHIPWARSIRHAASSAPVAPSSSSTYSGLPKKLSITSSGRPSF
QCFLTQEKQRRTFASGPAFIIDDLTLSLPPLRPPELSTPSRLADTAAHGG
SPKHRRRKKAAPTDEAASGVENPTYVSPLDAPPKKTPSLRRRRKVSTASS
PSPDASAVPCPPLSPLPSRPRIDNVNEEAYVTTTDSISEPTLLENRKKQK
EKKEKKEKKEKKLPPSNRSPAAVTARKLADWDREHVPSLAAAEQLVEGIR
QHLSYRYYPLKVFLDQIPDTVTARDLFQIFAGLSGNGEVEAVVVLEAMRA
RRRRQGTDDLQETGPRTAIIQLGDKATYDRALSDDVRMFGICWQRHLYKP
TRGLGRNLFFTLSSGEYSVQDMAGKGLSVPPPPPLEELSISFLKEVGESC
DEEGEEGGTAQH*
back to top

mRNA from alignment at chr20:570449..572632-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01900.2 ID=NO20G01900.2|Name=NO20G01900.2|organism=Nannochloropsis oceanica|type=mRNA|length=2184bp|location=Sequence derived from alignment at chr20:570449..572632- (Nannochloropsis oceanica)
CGGGCTTGTTCGACGGCTCCCGGGCTCTCTCCCCCTATTAATCCTATTTT
GAGTTCTTCTTTAACTCAAGACCCTCATCTGAAAACATAGTTAAGCAACA
TGTTCCTGTGAGACCTGTTTATTTTCTTCACCTCCATGTACCGGCTCGTC
CACCGCACACACATCCCGTGGGCTCGAAGTATCCGTCATGCTGCCAGTTC
CGCTCCTGTCGCCCCCTCCTCCTCCTCGACATACTCCGGCTTACCCAAGA
AGTTATCAATTACATCATCTGGACGGCCATCATTTCAATGTAGGTTTCGT
ATTGGATGTGGCAGGGCGAAAGTGGCTGAGTTTCAAAGGAAGACCACAAA
GACCCACCTGACGTCTTCCTCCCTTCTACCCTGCACCCAAAGGCTTTTTG
ACACAAGAGAAACAAAGGCGAACTTTTGCAAGCGGTCCAGCGTTTATTAT
CGACGATCTCACCCTTTCCTTGCCACCATTGCGACCGCCAGAGCTGTCCA
CTCCAAGCCGGCTTGCTGATACCGCAGCCCACGGTGGATCCCCCAAGCAT
CGCCGTAGGAAAAAGGCGGCGCCGACTGATGAAGCAGCTTCAGGTGTGGA
AAATCCTACTTATGTCTCGCCATTGGATGCACCTCCTAAAAAAACTCCGT
CTTTGCGCCGGCGACGGAAAGTGTCGACAGCATCATCGCCATCCCCGGAT
GCCAGCGCCGTCCCTTGTCCTCCTCTTTCTCCTCTACCTTCTCGCCCACG
GATCGACAATGTCAACGAAGAAGCCTACGTCACCACTACTGACTCTATAT
CCGAACCCACGTTGCTCGAAAATAGGAAGAAGCAAAAGGAGAAGAAGGAG
AAGAAGGAGAAGAAGGAGAAGAAACTACCACCTTCCAACCGTTCGCCCGC
CGCCGTGACCGCCCGTAAATTGGCGGACTGGGACAGGGAGCATGTGCCCA
GCCTGGCGGCAGCTGAGCAGCTCGTAGAAGGGATTCGGCAGCACTTGTCA
TACCGGTACTACCCACTCAAGGTCTTTCTAGATCAAATCCCAGACACGGT
CACAGCACGAGACCTGTTTCAGATATTCGCGGGTTTGAGTGGGAATGGCG
AGGTGGAGGCAGTGGTAGTGTTGGAGGCAATGCGAGCAAGGAGAAGGCGA
CAAGGGACGGATGATTTGCAGGAAACAGGACCGAGAACGGGTACGTTGCC
ATTGAAGGAATACATGCGCCCGTGATCAAGCTGCCAAGAAAGGCCTGAAC
AGACTCTCACACGCGCATCACTCCTTTCACTCAAACACATAGCGATCATC
CAGCTTGGTGACAAAGCCACCTACGACCGGGCCCTGAGCGACGATGTACG
GATGTTTGGCATCTGCTGGCAGGTAGGCAACAGGGAACTTTACAGGGCGG
GTGATGAAAGGAAGGTGTGTCTTTAGATCGATTGGGACATAATGACTCCT
CTATGTAATACACACACCCCACTTCACAGCGGCATCTTTATAAGCCCACG
CGAGGACTGGGCCGGAATCTCTTCTTCACACTCTCTTCGGGTGAGTACAG
TGTCCAAGACATGGCTGGCAAGGGGCTGAGTGTGCCACCACCACCGCCGC
TTGAGGAACTGAGCATCTCCTTTTTGAAAGAGGTTGGAGAAAGCTGTGAC
GAGGAAGGAGAGGAGGGCGGGACTGCCCAACACTAGACTGGCGCTGATGC
CCAACAAATGCTTGCACACGTGGTATTAAACCAACCAGCCGGTGAAGTGG
GGGGACAGGGAAGAGGGTGGGCGAAGGCACGGGCAAGGGAAAATTGAGGA
AAGATTGTACTCGTCGAAAGAAAAAAAATAGAGCTCAAAGCATGTGGATA
ACAACCAGATACTAGGGTGGAGAGGCGCGGGAATTTCATGTTTTCTACCA
TCCAGTTTATTTGTTGTTGCCCGAGGATGAATCGATTTGTGGCATTGAGC
CCGTAGTCTACGTATCGAGTGGCCGTGGCCGTTCTATGATACTTTCCTCC
GGCACTGCAGGCACATCCATGCAACGCGATGTAATATGTGACCATAGTCA
GATTTGGTGTGCTAAAATAGGCGCATTTTCACCCTGCATACACCTCCCAC
CGGACGTATTGCTGTACAGTTACAACACCATACTAACCAGAATGACAGCT
GCTCACAACAGGCTCACAACGGCGGAATTCGCCG
back to top

Coding sequence (CDS) from alignment at chr20:570449..572632-

>NO20G01900.2 ID=NO20G01900.2|Name=NO20G01900.2|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr20:570449..572632- (Nannochloropsis oceanica)
ATGTACCGGCTCGTCCACCGCACACACATCCCGTGGGCTCGAAGTATCCG
TCATGCTGCCAGTTCCGCTCCTGTCGCCCCCTCCTCCTCCTCGACATACT
CCGGCTTACCCAAGAAGTTATCAATTACATCATCTGGACGGCCATCATTT
CAATGCTTTTTGACACAAGAGAAACAAAGGCGAACTTTTGCAAGCGGTCC
AGCGTTTATTATCGACGATCTCACCCTTTCCTTGCCACCATTGCGACCGC
CAGAGCTGTCCACTCCAAGCCGGCTTGCTGATACCGCAGCCCACGGTGGA
TCCCCCAAGCATCGCCGTAGGAAAAAGGCGGCGCCGACTGATGAAGCAGC
TTCAGGTGTGGAAAATCCTACTTATGTCTCGCCATTGGATGCACCTCCTA
AAAAAACTCCGTCTTTGCGCCGGCGACGGAAAGTGTCGACAGCATCATCG
CCATCCCCGGATGCCAGCGCCGTCCCTTGTCCTCCTCTTTCTCCTCTACC
TTCTCGCCCACGGATCGACAATGTCAACGAAGAAGCCTACGTCACCACTA
CTGACTCTATATCCGAACCCACGTTGCTCGAAAATAGGAAGAAGCAAAAG
GAGAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAACTACCACCTTCCAA
CCGTTCGCCCGCCGCCGTGACCGCCCGTAAATTGGCGGACTGGGACAGGG
AGCATGTGCCCAGCCTGGCGGCAGCTGAGCAGCTCGTAGAAGGGATTCGG
CAGCACTTGTCATACCGGTACTACCCACTCAAGGTCTTTCTAGATCAAAT
CCCAGACACGGTCACAGCACGAGACCTGTTTCAGATATTCGCGGGTTTGA
GTGGGAATGGCGAGGTGGAGGCAGTGGTAGTGTTGGAGGCAATGCGAGCA
AGGAGAAGGCGACAAGGGACGGATGATTTGCAGGAAACAGGACCGAGAAC
GGCGATCATCCAGCTTGGTGACAAAGCCACCTACGACCGGGCCCTGAGCG
ACGATGTACGGATGTTTGGCATCTGCTGGCAGCGGCATCTTTATAAGCCC
ACGCGAGGACTGGGCCGGAATCTCTTCTTCACACTCTCTTCGGGTGAGTA
CAGTGTCCAAGACATGGCTGGCAAGGGGCTGAGTGTGCCACCACCACCGC
CGCTTGAGGAACTGAGCATCTCCTTTTTGAAAGAGGTTGGAGAAAGCTGT
GACGAGGAAGGAGAGGAGGGCGGGACTGCCCAACACTAG
back to top
Synonyms
Publications