NO20G01860, NO20G01860 (gene) Nannochloropsis oceanica

Overview
NameNO20G01860
Unique NameNO20G01860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1886
Alignment locationchr20:559947..561832 +

Link to JBrowse

Properties
Property NameValue
DescriptionSwib complex baf60b domain-containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:559947..561832 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036885SWIB_MDM2_dom_sf
IPR003121SWIB_MDM2_domain
IPR019835SWIB_domain
Homology
[Close]
BLAST of NO20G01860 vs. NCBI_GenBank
Match: EWM22046.1 (swib complex baf60b domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 137.5 bits (345), Expect = 1.900e-29
Identity = 69/81 (85.19%), Postives = 73/81 (90.12%), Query Frame = 0 
Query:    1 MSGLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREILCDESLKAVFEKDSVTMFEMMKLMSKHITKP 82
            MSGLK VMRVSP LAKVLG ++M RTEAVKRIWSYIKDK LQNPSNKREI+CD SLKAVFEKDSVTMFEM KLMSKH +KP
Sbjct:   65 MSGLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFSKP 145
[Close]
BLAST of NO20G01860 vs. NCBI_GenBank
Match: SHO76014.1 (Similar to S.cerevisiae protein UAF30 (Subunit of UAF (upstream activation factor) complex) [Malassezia sympodialis ATCC 42132])

HSP 1 Score: 95.5 bits (236), Expect = 8.100e-17
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 0 
Query:    2 SGLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREILCDESLKAVFEKDSVTMFEMMKLMSKHITK 81
            S LK  M++S  +A+V GD++MPR E VKR+W YIKDK+LQN SNKR+ILCDE L  +F K ++  FEM KL+  H+TK
Sbjct:  117 SPLKRPMKLSAEMAEVCGDSEMPRYEVVKRLWVYIKDKNLQNDSNKRQILCDEKLTGLFGKSAIDSFEMAKLIGPHLTK 195
[Close]
BLAST of NO20G01860 vs. NCBI_GenBank
Match: EOY28886.1 (SWIB complex BAF60b domain-containing protein, putative isoform 1 [Theobroma cacao] >EOY28887.1 SWIB complex BAF60b domain-containing protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 94.7 bits (234), Expect = 1.400e-16
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:    3 GLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREILCDESLKAVFEKDSVTMFEMMKLMSKHIT 80
            GL  V  VSPAL  ++G+  +PRTE VK++W+YI+   LQ+PSNKR+I+CDE+L+ VFE D   MF+M KL++KHIT
Sbjct:  188 GLNKVCSVSPALQAIVGEPALPRTEIVKQLWAYIRKNSLQDPSNKRKIICDEALRLVFETDCTDMFKMNKLLAKHIT 264
[Close]
BLAST of NO20G01860 vs. NCBI_GenBank
Match: EOY28888.1 (SWIB complex BAF60b domain-containing protein, putative isoform 3 [Theobroma cacao])

HSP 1 Score: 94.7 bits (234), Expect = 1.400e-16
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:    3 GLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREILCDESLKAVFEKDSVTMFEMMKLMSKHIT 80
            GL  V  VSPAL  ++G+  +PRTE VK++W+YI+   LQ+PSNKR+I+CDE+L+ VFE D   MF+M KL++KHIT
Sbjct:  188 GLNKVCSVSPALQAIVGEPALPRTEIVKQLWAYIRKNSLQDPSNKRKIICDEALRLVFETDCTDMFKMNKLLAKHIT 264
[Close]
BLAST of NO20G01860 vs. NCBI_GenBank
Match: XP_007026265.2 (PREDICTED: uncharacterized protein LOC18597277 [Theobroma cacao])

HSP 1 Score: 94.7 bits (234), Expect = 1.400e-16
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:    3 GLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREILCDESLKAVFEKDSVTMFEMMKLMSKHIT 80
            GL  V  VSPAL  ++G+  +PRTE VK++W+YI+   LQ+PSNKR+I+CDE+L+ VFE D   MF+M KL++KHIT
Sbjct:  182 GLNKVCSVSPALQAIVGEPALPRTEIVKQLWAYIRKNSLQDPSNKRKIICDEALRLVFETDCTDMFKMNKLLAKHIT 258
[Close]
BLAST of NO20G01860 vs. NCBI_GenBank
Match: XP_021294085.1 (uncharacterized protein LOC110423967 [Herrania umbratica])

HSP 1 Score: 94.7 bits (234), Expect = 1.400e-16
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:    3 GLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREILCDESLKAVFEKDSVTMFEMMKLMSKHIT 80
            GL  V  VSPAL  ++G+  +PRTE VK++W+YI+   LQ+PSNKR+I+CDE+L+ VFE D   MF+M KL++KHIT
Sbjct:  184 GLNKVCSVSPALQAIVGEPALPRTEIVKQLWAYIRKNSLQDPSNKRKIICDEALRLVFETDCTDMFKMNKLLAKHIT 260
[Close]
BLAST of NO20G01860 vs. NCBI_GenBank
Match: WP_082474710.1 (hypothetical protein [Sphingomonas sp. Leaf343])

HSP 1 Score: 94.4 bits (233), Expect = 1.800e-16
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:    2 SGLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREILCDESLKAVFEKDSVTMFEMMKLMSKHI 79
            +G+ A ++ SP L  V+G++++PR+E + ++W+YIK  DLQNP NKREIL DE+LK VF KD VTMFEM K +S H+
Sbjct:   22 TGIHAPVQPSPELGAVVGNDRLPRSEVISKVWAYIKSNDLQNPENKREILADENLKKVFGKDKVTMFEMNKYISAHV 98
[Close]
BLAST of NO20G01860 vs. NCBI_GenBank
Match: XP_017638914.1 (PREDICTED: uncharacterized protein LOC108480426 [Gossypium arboreum] >KHG15356.1 Upstream activation factor subunit spp27 [Gossypium arboreum])

HSP 1 Score: 94.0 bits (232), Expect = 2.400e-16
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:    3 GLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREILCDESLKAVFEKDSVTMFEMMKLMSKHIT 80
            GL  V  VSPAL  ++G+  +PRTE VK++W+YI+   LQ+PSNKR+I+CD++L+ VFE D   MF+M KL++KHIT
Sbjct:  188 GLNKVCSVSPALQAIVGEPALPRTEIVKQLWAYIRKNSLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHIT 264
[Close]
BLAST of NO20G01860 vs. NCBI_GenBank
Match: XP_012448943.1 (PREDICTED: uncharacterized protein LOC105772179 [Gossypium raimondii] >KJB68546.1 hypothetical protein B456_010G249800 [Gossypium raimondii] >KJB68548.1 hypothetical protein B456_010G249800 [Gossypium raimondii] >KJB68549.1 hypothetical protein B456_010G249800 [Gossypium raimondii])

HSP 1 Score: 94.0 bits (232), Expect = 2.400e-16
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:    3 GLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREILCDESLKAVFEKDSVTMFEMMKLMSKHIT 80
            GL  V  VSPAL  ++G+  +PRTE VK++W+YI+   LQ+PSNKR+I+CD++L+ VFE D   MF+M KL++KHIT
Sbjct:  188 GLNKVCSVSPALQAIVGEPALPRTEIVKQLWAYIRKNSLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHIT 264
[Close]
BLAST of NO20G01860 vs. NCBI_GenBank
Match: WP_051242621.1 (hypothetical protein [Azohydromonas australica])

HSP 1 Score: 94.0 bits (232), Expect = 2.400e-16
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 0 
Query:    8 MRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREILCDESLKAVFEKDSVTMFEMMKLMSKHIT 80
            ++ SP LA ++G   +PRTEA KR+W YIK ++LQNP+NKR ILCD +LKAV  KD VTMFEM  L+SKH++
Sbjct:    4 LKPSPELAAIIGAEPLPRTEATKRLWDYIKQRNLQNPANKRNILCDGALKAVMGKDEVTMFEMTGLVSKHMS 75
The following BLAST results are available for this feature:
BLAST of NO20G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22046.11.900e-2985.19swib complex baf60b domain-containing protein [Nan... [more]
SHO76014.18.100e-1756.96Similar to S.cerevisiae protein UAF30 (Subunit of ... [more]
EOY28886.11.400e-1655.84SWIB complex BAF60b domain-containing protein, put... [more]
EOY28888.11.400e-1655.84SWIB complex BAF60b domain-containing protein, put... [more]
XP_007026265.21.400e-1655.84PREDICTED: uncharacterized protein LOC18597277 [Th... [more]
XP_021294085.11.400e-1655.84uncharacterized protein LOC110423967 [Herrania umb... [more]
WP_082474710.11.800e-1654.55hypothetical protein [Sphingomonas sp. Leaf343][more]
XP_017638914.12.400e-1654.55PREDICTED: uncharacterized protein LOC108480426 [G... [more]
XP_012448943.12.400e-1654.55PREDICTED: uncharacterized protein LOC105772179 [G... [more]
WP_051242621.12.400e-1659.72hypothetical protein [Azohydromonas australica][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002726NSK002726Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01860.1NO20G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G01860.2NO20G01860.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594918gene_6405Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100052g17gene8386Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01860.1NO20G01860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G01860.2NO20G01860.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01860 ID=NO20G01860|Name=NO20G01860|organism=Nannochloropsis oceanica|type=gene|length=1886bp
GGGGCAAGGAGGTCTAGTCGGGCAATCAATGTCAACTCGATCCTTTTCCA
GGTACAGCTTGGTCAAGGCGTTCCCCTGTACTAGTAAGTAGTTTTGGGGT
ATCGTTTGCTTGTAGTGGCAAGTTCAGGGTGTGTTGTTAAGATCAATACA
TGTCTTAAACGCGCTAGCCAAGGCACGCAATGTGTATGGGTGTGTGGGCC
AATTAAGTGTTGATGGATGCCAACGCTTCGCATGCATGTTTATTCTTGCG
TCCCTTTCGCGTGCCCCATCTTTTGCTTTGCCTCGCCGCACACCGTATTA
GAGCGCTAGATCGTTTCCTGCGGGGGCAGGATGGTCGTACGGAAAGAGTG
GACGGTCAAATGGAAGTTTCTTGATAGTGTCCCGAGGCAGAGGAGGTCAC
GGAATGGGGTGGTGATCAATAATGCGCCGGCACATCGTTGATCATGCCAT
GCTGATATTGCGGCCGACATTCACGTCACCACATACCAACACCCCACCCT
CGTTTATATCGCATCCCAACACAGCTGCCAATTACTGAGAGTGCGGCGGC
CAGGAACGACTCGGTTGTCTTGAGGAGGTAAGAAGGATGGAGGCGCAGTT
CGCCTTGTCTGTACTGAATGCGCATGCCGACCCCGCCGCACCCTGCTTTT
TAATTTTGTTTCGTATGGGCACGTGAAGATGTGCATGTGCGGACAGTGTT
TGGAATGGTGGTACTCTTGCGTCATTGTGCTCGCATGCACTCCACCTTCC
ACCCCGGATCTAAAATACATCACCGCAACGCACTCTAGCTAGAGGGGAGT
ATTGGCCTTTTCATCGTGGCCTTGCTTCCTGTACATCGAACATACCAAGA
GATGCAAAAACAATCTGAGAGAACTAGAGTTGGAGGAAGGCTCTTTATCC
CAGGTCTCCCCCCGCTTCGTTGTCTTACATTTCCTACCCCACCTCCCACT
CCGCGTGCGTGTTTGTATCTCGCTTGCCCCCTAGACTGACATTCACATAT
TATGACTCACCATGCCCCATAATATAAACACGCAACACGAAACCAGATAT
GTCGGGGCTCAAGGCTGTCATGCGAGTCTCCCCTGCCCTTGCCAAAGTTC
TGGGCGACAACCAAATGCCCCGCACAGAAGCCGTCAAACGAATgtaggtc
gcagcgtgattccgccacgaggacatctatattcggctctctttcctttc
cctgcgaagtgttgcgtaatgctcttattttttgcatttgtgaaattctt
tccaattagatgtcccagcattggctttggaaaggcttgggcgcagtttc
cttttctacttgcctgcccgatgcaccttcttacactcctctccttccgc
ttccattctctctcccccgacactcaccgattctctatccagCTGGTCGT
ATATCAAGGATAAGGACTTGCAAAACCCATCCAACAAGCGCGAGATTTTG
TGCGACGAGTCCCTCAAGGCCGTGTTCGAGAAAGATTCGGTCACCATGTT
TGAAATGATGAAACTCATGAGCAAGCACATAACCAAGCCGTGAACAAAGC
ATAAGACAAGCGCTATCTGTTCTCAACATTGCTTCGGATATGAGACGGAT
GCGAGTGTGTGTGACGTTCAAGGAAACAAAGCATTAAGTACAGTCTCTGA
ATTTAGAAGACACGGCCGTGTGTGATTTTAGTTGGAAAAATGGAAGCTCT
CCGTCATTTCTGATTTTGTATGTAGTGTGTGAAAGCTCAATGGAGGCAAT
TTTTAAAAATAGAAAACGAGATCGCCGTGTACAGGCACGAACAGGGGACC
GATAAAAGCGAGGAAGCAGAGAGACCGCGTGTGAATACCACAAAGAAAGA
AACTCTCAGCCCACAAGTTAACTCCTCAACGTGTGC
back to top

protein sequence of NO20G01860.1

>NO20G01860.1-protein ID=NO20G01860.1-protein|Name=NO20G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MSGLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREI
LCDESLKAVFEKDSVTMFEMMKLMSKHITKP*
back to top

protein sequence of NO20G01860.2

>NO20G01860.2-protein ID=NO20G01860.2-protein|Name=NO20G01860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MSGLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREI
LCDESLKAVFEKDSVTMFEMMKLMSKHITKP*
back to top
Synonyms
Publications