NO20G01860.1, NO20G01860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01860.1
Unique NameNO20G01860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1637
Alignment locationchr20:559947..561832 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:559947..561832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01860.1 vs.
Match: EWM22046.1 (swib complex baf60b domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 137.5 bits (345), Expect = 1.900e-29
Identity = 69/81 (85.19%), Postives = 73/81 (90.12%), Query Frame = 0 
Query:    1 MSGLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREILCDESLKAVFEKDSVTMFEMMKLMSKHITKP 82
            MSGLK VMRVSP LAKVLG ++M RTEAVKRIWSYIKDK LQNPSNKREI+CD SLKAVFEKDSVTMFEM KLMSKH +KP
Sbjct:   65 MSGLKTVMRVSPELAKVLGGDRMARTEAVKRIWSYIKDKKLQNPSNKREIVCDNSLKAVFEKDSVTMFEMNKLMSKHFSKP 145
The following BLAST results are available for this feature:
BLAST of NO20G01860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22046.11.900e-2985.19swib complex baf60b domain-containing protein [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01860NO20G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01860.1NO20G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01860.1.cds1NO20G01860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01860.1.cds2NO20G01860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01860.1 ID=NO20G01860.1|Name=NO20G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1637bp
GGGGCAAGGAGGTCTAGTCGGGCAATCAATGTCAACTCGATCCTTTTCCA
GGTACAGCTTGGTCAAGGCGTTCCCCTGTACTAGTAAGTAGTTTTGGGGT
ATCGTTTGCTTGTAGTGGCAAGTTCAGGGTGTGTTGTTAAGATCAATACA
TGTCTTAAACGCGCTAGCCAAGGCACGCAATGTGTATGGGTGTGTGGGCC
AATTAAGTGTTGATGGATGCCAACGCTTCGCATGCATGTTTATTCTTGCG
TCCCTTTCGCGTGCCCCATCTTTTGCTTTGCCTCGCCGCACACCGTATTA
GAGCGCTAGATCGTTTCCTGCGGGGGCAGGATGGTCGTACGGAAAGAGTG
GACGGTCAAATGGAAGTTTCTTGATAGTGTCCCGAGGCAGAGGAGGTCAC
GGAATGGGGTGGTGATCAATAATGCGCCGGCACATCGTTGATCATGCCAT
GCTGATATTGCGGCCGACATTCACGTCACCACATACCAACACCCCACCCT
CGTTTATATCGCATCCCAACACAGCTGCCAATTACTGAGAGTGCGGCGGC
CAGGAACGACTCGGTTGTCTTGAGGAGGTAAGAAGGATGGAGGCGCAGTT
CGCCTTGTCTGTACTGAATGCGCATGCCGACCCCGCCGCACCCTGCTTTT
TAATTTTGTTTCGTATGGGCACGTGAAGATGTGCATGTGCGGACAGTGTT
TGGAATGGTGGTACTCTTGCGTCATTGTGCTCGCATGCACTCCACCTTCC
ACCCCGGATCTAAAATACATCACCGCAACGCACTCTAGCTAGAGGGGAGT
ATTGGCCTTTTCATCGTGGCCTTGCTTCCTGTACATCGAACATACCAAGA
GATGCAAAAACAATCTGAGAGAACTAGAGTTGGAGGAAGGCTCTTTATCC
CAGGTCTCCCCCCGCTTCGTTGTCTTACATTTCCTACCCCACCTCCCACT
CCGCGTGCGTGTTTGTATCTCGCTTGCCCCCTAGACTGACATTCACATAT
TATGACTCACCATGCCCCATAATATAAACACGCAACACGAAACCAGATAT
GTCGGGGCTCAAGGCTGTCATGCGAGTCTCCCCTGCCCTTGCCAAAGTTC
TGGGCGACAACCAAATGCCCCGCACAGAAGCCGTCAAACGAATCTGGTCG
TATATCAAGGATAAGGACTTGCAAAACCCATCCAACAAGCGCGAGATTTT
GTGCGACGAGTCCCTCAAGGCCGTGTTCGAGAAAGATTCGGTCACCATGT
TTGAAATGATGAAACTCATGAGCAAGCACATAACCAAGCCGTGAACAAAG
CATAAGACAAGCGCTATCTGTTCTCAACATTGCTTCGGATATGAGACGGA
TGCGAGTGTGTGTGACGTTCAAGGAAACAAAGCATTAAGTACAGTCTCTG
AATTTAGAAGACACGGCCGTGTGTGATTTTAGTTGGAAAAATGGAAGCTC
TCCGTCATTTCTGATTTTGTATGTAGTGTGTGAAAGCTCAATGGAGGCAA
TTTTTAAAAATAGAAAACGAGATCGCCGTGTACAGGCACGAACAGGGGAC
CGATAAAAGCGAGGAAGCAGAGAGACCGCGTGTGAATACCACAAAGAAAG
AAACTCTCAGCCCACAAGTTAACTCCTCAACGTGTGC
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protein sequence of NO20G01860.1

>NO20G01860.1-protein ID=NO20G01860.1-protein|Name=NO20G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MSGLKAVMRVSPALAKVLGDNQMPRTEAVKRIWSYIKDKDLQNPSNKREI
LCDESLKAVFEKDSVTMFEMMKLMSKHITKP*
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mRNA from alignment at chr20:559947..561832+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01860.1 ID=NO20G01860.1|Name=NO20G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1886bp|location=Sequence derived from alignment at chr20:559947..561832+ (Nannochloropsis oceanica)
GGGGCAAGGAGGTCTAGTCGGGCAATCAATGTCAACTCGATCCTTTTCCA
GGTACAGCTTGGTCAAGGCGTTCCCCTGTACTAGTAAGTAGTTTTGGGGT
ATCGTTTGCTTGTAGTGGCAAGTTCAGGGTGTGTTGTTAAGATCAATACA
TGTCTTAAACGCGCTAGCCAAGGCACGCAATGTGTATGGGTGTGTGGGCC
AATTAAGTGTTGATGGATGCCAACGCTTCGCATGCATGTTTATTCTTGCG
TCCCTTTCGCGTGCCCCATCTTTTGCTTTGCCTCGCCGCACACCGTATTA
GAGCGCTAGATCGTTTCCTGCGGGGGCAGGATGGTCGTACGGAAAGAGTG
GACGGTCAAATGGAAGTTTCTTGATAGTGTCCCGAGGCAGAGGAGGTCAC
GGAATGGGGTGGTGATCAATAATGCGCCGGCACATCGTTGATCATGCCAT
GCTGATATTGCGGCCGACATTCACGTCACCACATACCAACACCCCACCCT
CGTTTATATCGCATCCCAACACAGCTGCCAATTACTGAGAGTGCGGCGGC
CAGGAACGACTCGGTTGTCTTGAGGAGGTAAGAAGGATGGAGGCGCAGTT
CGCCTTGTCTGTACTGAATGCGCATGCCGACCCCGCCGCACCCTGCTTTT
TAATTTTGTTTCGTATGGGCACGTGAAGATGTGCATGTGCGGACAGTGTT
TGGAATGGTGGTACTCTTGCGTCATTGTGCTCGCATGCACTCCACCTTCC
ACCCCGGATCTAAAATACATCACCGCAACGCACTCTAGCTAGAGGGGAGT
ATTGGCCTTTTCATCGTGGCCTTGCTTCCTGTACATCGAACATACCAAGA
GATGCAAAAACAATCTGAGAGAACTAGAGTTGGAGGAAGGCTCTTTATCC
CAGGTCTCCCCCCGCTTCGTTGTCTTACATTTCCTACCCCACCTCCCACT
CCGCGTGCGTGTTTGTATCTCGCTTGCCCCCTAGACTGACATTCACATAT
TATGACTCACCATGCCCCATAATATAAACACGCAACACGAAACCAGATAT
GTCGGGGCTCAAGGCTGTCATGCGAGTCTCCCCTGCCCTTGCCAAAGTTC
TGGGCGACAACCAAATGCCCCGCACAGAAGCCGTCAAACGAATGTAGGTC
GCAGCGTGATTCCGCCACGAGGACATCTATATTCGGCTCTCTTTCCTTTC
CCTGCGAAGTGTTGCGTAATGCTCTTATTTTTTGCATTTGTGAAATTCTT
TCCAATTAGATGTCCCAGCATTGGCTTTGGAAAGGCTTGGGCGCAGTTTC
CTTTTCTACTTGCCTGCCCGATGCACCTTCTTACACTCCTCTCCTTCCGC
TTCCATTCTCTCTCCCCCGACACTCACCGATTCTCTATCCAGCTGGTCGT
ATATCAAGGATAAGGACTTGCAAAACCCATCCAACAAGCGCGAGATTTTG
TGCGACGAGTCCCTCAAGGCCGTGTTCGAGAAAGATTCGGTCACCATGTT
TGAAATGATGAAACTCATGAGCAAGCACATAACCAAGCCGTGAACAAAGC
ATAAGACAAGCGCTATCTGTTCTCAACATTGCTTCGGATATGAGACGGAT
GCGAGTGTGTGTGACGTTCAAGGAAACAAAGCATTAAGTACAGTCTCTGA
ATTTAGAAGACACGGCCGTGTGTGATTTTAGTTGGAAAAATGGAAGCTCT
CCGTCATTTCTGATTTTGTATGTAGTGTGTGAAAGCTCAATGGAGGCAAT
TTTTAAAAATAGAAAACGAGATCGCCGTGTACAGGCACGAACAGGGGACC
GATAAAAGCGAGGAAGCAGAGAGACCGCGTGTGAATACCACAAAGAAAGA
AACTCTCAGCCCACAAGTTAACTCCTCAACGTGTGC
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Coding sequence (CDS) from alignment at chr20:559947..561832+

>NO20G01860.1 ID=NO20G01860.1|Name=NO20G01860.1|organism=Nannochloropsis oceanica|type=CDS|length=246bp|location=Sequence derived from alignment at chr20:559947..561832+ (Nannochloropsis oceanica)
ATGTCGGGGCTCAAGGCTGTCATGCGAGTCTCCCCTGCCCTTGCCAAAGT
TCTGGGCGACAACCAAATGCCCCGCACAGAAGCCGTCAAACGAATCTGGT
CGTATATCAAGGATAAGGACTTGCAAAACCCATCCAACAAGCGCGAGATT
TTGTGCGACGAGTCCCTCAAGGCCGTGTTCGAGAAAGATTCGGTCACCAT
GTTTGAAATGATGAAACTCATGAGCAAGCACATAACCAAGCCGTGA
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Synonyms
Publications