NO20G01790, NO20G01790 (gene) Nannochloropsis oceanica

Overview
NameNO20G01790
Unique NameNO20G01790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1096
Alignment locationchr20:540052..541147 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:540052..541147 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO20G01790 vs. NCBI_GenBank
Match: EWM22043.1 (hypothetical protein Naga_100052g8 [Nannochloropsis gaditana])

HSP 1 Score: 339.3 bits (869), Expect = 1.000e-89
Identity = 198/261 (75.86%), Postives = 219/261 (83.91%), Query Frame = 0
Query:    1 MRFFLAGVLLLMLPFLALGFVPRLSKKGLAIKIGSPALKARLAGVTSLSAXXXXXXXXXXXXXXXXXXXXXMRGMFNADGKAYAPWMMNQIDVEASARXXXXXXXXXXXXXXXVDTGDVFDPQGKEASVGLKYRVINERDVELGWLTGEEKDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVEPGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVLAFFGALVLGGVVASFLYEPLQ 262
            M   LA  L L LP L LGF+P L +  L  KI      +++    +LS      XXXXXXXXXXXXXXXXMRGM NA+GK YAPWMM+QID+EASAR XXXXXXXXXXX   VDTGDVFDPQGKEASVGLKYRVIN+RDVELGWLTGEEKDN+GYIIFRKRAD PGAEFEE+ASFKTFPPLN+KGPEGGFYSYVD+G+EPGQY+YR+TDQDK +KRTLLCQSGVEVQ+ GEKLRNT VLA FGALV+GGVVASF+YEPLQ
Sbjct:    1 MTRLLAAFLFLSLPLLVLGFLPSLPRSSLTSKISGLTFTSKVGDKCALSVKLTKEXXXXXXXXXXXXXXXXMRGMLNAEGKPYAPWMMDQIDLEASARAXXXXXXXXXXXASAVDTGDVFDPQGKEASVGLKYRVINDRDVELGWLTGEEKDNIGYIIFRKRADEPGAEFEEVASFKTFPPLNSKGPEGGFYSYVDQGLEPGQYLYRVTDQDKKNKRTLLCQSGVEVQSSGEKLRNTAVLALFGALVVGGVVASFVYEPLQ 261          
BLAST of NO20G01790 vs. NCBI_GenBank
Match: CBJ29161.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.3 bits (329), Expect = 4.300e-27
Identity = 70/189 (37.04%), Postives = 107/189 (56.61%), Query Frame = 0
Query:   75 MFNADGKAYAPWMMNQIDVEASARXXXXXXXXXXXXXXXVDT---GDVFDPQGKEAS-VGLKYRVINERDVELGWLTGEEKDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVEPGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVLAFFGALVLGGVVASFLYEP 260
            MFN DG AYAPWM++  D E  A+               V         DPQ  E S  GL  + +++  VEL W TG E+ N+G+I+ R+ A     E++EIAS+K FPPLN+KGP GG Y+Y D+ V+ G +VYRI+D  K+  ++ LCQ+ +E+Q+  ++L+  + +A    +++    A    +P
Sbjct:   79 MFNDDGVAYAPWMVDAFDPENLAKVAASIEARKEKEANTVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTD--EWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGVKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDP 265          
BLAST of NO20G01790 vs. NCBI_GenBank
Match: KOO24795.1 (peptidase s8 s53 subtilisin kexin sedolisin [Chrysochromulina sp. CCMP291])

HSP 1 Score: 125.9 bits (315), Expect = 1.800e-25
Identity = 71/192 (36.98%), Postives = 102/192 (53.12%), Query Frame = 0
Query:   72 MRGMFNADGKAYAPWMMNQIDVEASARXXXXXXXXXXXXXXXVDTGDVFDPQGKE--ASVGLKYRVINERDVELGWLTGEEKDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVEPGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVLAFFGALVLGGVVASFLYEPLQ 262
            +  M +A G  +APWM    +  A A+                DT  + DPQ  E  A  GLK +V++E +VEL W T +E  N G+I+ R++   P  EF +IAS+K+F PL TKG  GG Y ++D+ V PG +VYRI D +   +R+ +CQ  VE+ +  E  +  LV      L L  VV   L +P+Q
Sbjct:   95 INNMRSASGVEFAPWMKVDAEAIAKAKMERAERKIRSATTKKSDT-MLIDPQAAELGAGGGLKSKVLSEEEVELRWSTQDEVGNAGFIVQRRKGGQP--EFADIASYKSFSPLKTKGVAGGEYVFLDDAVSPGTWVYRILDCNTNGERSAVCQKLVEIDSKSETSQTVLVGVLIAGLALALVVGGVLSDPIQ 283          
BLAST of NO20G01790 vs. NCBI_GenBank
Match: XP_009034292.1 (hypothetical protein AURANDRAFT_62132 [Aureococcus anophagefferens] >EGB10701.1 hypothetical protein AURANDRAFT_62132 [Aureococcus anophagefferens])

HSP 1 Score: 125.6 bits (314), Expect = 2.300e-25
Identity = 64/192 (33.33%), Postives = 109/192 (56.77%), Query Frame = 0
Query:   75 MFNADGKAYAPWMMNQIDVE----ASARXXXXXXXXXXXXXXXVDTGDVFDPQGKEAS-VGLKYRVINERDVELGWLTGEEKDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVEPGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVLAFFGALVLGGVVASFLYEPLQ 262
            MFN +G AYAPWM+NQ+D +    A A                  T ++ D    E S +GLK + +++ +VEL W T +E+DN G+++ +K      +E+EE+AS+ ++ PL +KG  GG YSYVD   E G+++YR+  +   + R + CQ G+ V++ G+ L+  +++     L +G + A  L +P++
Sbjct:   69 MFNENGVAYAPWMVNQVDEDAVNIARAMRKDKKRVERLAMLEKQGTVNILDAATSELSGIGLKAKCVDDGEVELLWGTNDEEDNKGFVVEKKLVGR--SEWEEVASYSSWSPLKSKGTLGGAYSYVDVTAEEGEWLYRVVAEQVDNTRAITCQVGISVESAGQALQTKIIVGAAAVLGVGFLAAGALLDPIR 258          
BLAST of NO20G01790 vs. NCBI_GenBank
Match: GAX21043.1 (hypothetical protein FisN_1Lh285 [Fistulifera solaris])

HSP 1 Score: 115.2 bits (287), Expect = 3.200e-22
Identity = 72/195 (36.92%), Postives = 100/195 (51.28%), Query Frame = 0
Query:   72 MRGMFNADGKAYAPWMMNQIDVEASARXXXXXXXXXXXXXXXVDT---GDVF-DPQGKEAS-VGLKYRVINERDVELGWLTGEEKDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVEPGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVLAFFGALVLGGVVASFLYEPLQ 262
            M  + N  G  YAPWM    + E   R                +T   G +  D   +E S  GLKY+VI +  VEL W TGEE +  G+I+  KR  A   +FE +AS+  + PL +KG  GG Y ++D+ VEPG +VYR+T++DK      L Q  VE+Q   E++   +    FG L +  VVA  L +PLQ
Sbjct:   63 MSNLRNERGIEYAPWMKITAEDEKEIRKVMRDKAEARRKRKEQETQVQGSLLRDSAFQELSGTGLKYKVI-DGAVELEWTTGEESNTQGFIV--KRRPAKTEKFEVLASYANYGPLQSKGSSGGVYRFLDDQVEPGGWVYRVTEKDKNGSENDLSQCLVEIQTNEEQMATKVAAIGFGVLAVAAVVAGALIDPLQ 254          
BLAST of NO20G01790 vs. NCBI_GenBank
Match: GAX12352.1 (hypothetical protein FisN_1Hh285 [Fistulifera solaris])

HSP 1 Score: 115.2 bits (287), Expect = 3.200e-22
Identity = 72/195 (36.92%), Postives = 100/195 (51.28%), Query Frame = 0
Query:   72 MRGMFNADGKAYAPWMMNQIDVEASARXXXXXXXXXXXXXXXVDT---GDVF-DPQGKEAS-VGLKYRVINERDVELGWLTGEEKDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVEPGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVLAFFGALVLGGVVASFLYEPLQ 262
            M  + N  G  YAPWM    + E   R                +T   G +  D   +E S  GLKY+VI +  VEL W TGEE +  G+I+  KR  A   +FE +AS+  + PL +KG  GG Y ++D+ VEPG +VYR+T++DK      L Q  VE+Q   E++   +    FG L +  VVA  L +PLQ
Sbjct:   63 MSNLRNERGIEYAPWMKITAEDEKEIRKVMRDKAEARRKRKEQETQVQGSLLRDSAFQELSGTGLKYKVI-DGAVELEWTTGEESNTQGFIV--KRRPAKTEKFEVLASYANYGPLQSKGSSGGVYRFLDDQVEPGGWVYRVTEKDKNGSENDLSQCLVEIQTNEEQMATKVAAIGFGVLAVAAVVAGALIDPLQ 254          
BLAST of NO20G01790 vs. NCBI_GenBank
Match: XP_005707531.1 (hypothetical protein Gasu_17720 [Galdieria sulphuraria] >EME31011.1 hypothetical protein Gasu_17720 [Galdieria sulphuraria])

HSP 1 Score: 111.7 bits (278), Expect = 3.500e-21
Identity = 61/189 (32.28%), Postives = 100/189 (52.91%), Query Frame = 0
Query:   73 RGMFNADGKAYAPWMMNQIDVEASARXXXXXXXXXXXXXXXVDTGDVFDPQGKE-ASVGLKYRVINERDVELGWLTGEEKDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVEPGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVLAFFGALVLGGVVASFLYEPL 261
            + ++ ADG  YAPW++ ++  +                          DPQ +E A VGLK R++ + +VEL W T +E++N+G+++ R+R      +F+ IA +KT P L +KG  GG YS++D    PG ++YRI+D +   +   LCQ+ VE+ +  +K R  L +     LV+   V   L +PL
Sbjct:  130 KSLYRADGTPYAPWLIGKVMEDPRPLTSRKKPSASGRL--------AADPQLQEIAGVGLKARILGD-EVELVWSTDKEENNIGFVVQRRRGGT--EDFQVIADYKTDPSLKSKGSSGGNYSFIDSSASPGTWIYRISDVNAQGETNDLCQTLVEISSNEDKQRQKLAVIILSGLVIILFVVGLLLDPL 307          
BLAST of NO20G01790 vs. NCBI_GenBank
Match: XP_005537421.1 (hypothetical protein CYME_CMN316C [Cyanidioschyzon merolae strain 10D] >BAM81385.1 hypothetical protein CYME_CMN316C [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 104.8 bits (260), Expect = 4.300e-19
Identity = 67/190 (35.26%), Postives = 103/190 (54.21%), Query Frame = 0
Query:   75 MFNADGKAYAPWMMNQIDVEASARXXXXXXXXXXXXXXXVDTGDVFDPQGKE-ASVGLKYRVINERDVELGWLTGEEKDNVGYIIFRKRADAPGAEFEEIASFKTFP-PLNTKGPEGGFYSYVDEGVE-PGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVL-AFFGALVLGGVVASFLYEPL 261
            ++  DG  YAPWM+  ++ E S                        DPQ +E A +GL+ R++++RDVEL W T  E +N G+ + R+R  +   ++E IA +K+ P  L +KG +GG Y ++D   E  G +VYR++D D + + + L Q  VE ++  E+ R  LVL A  G L+L G V S L +PL
Sbjct:  116 LYRPDGTPYAPWMIGLVEEEPSKEKGLASRTDARGRLAG-------DPQAQEIAGIGLRARIVDDRDVELLWRTEGETNNAGFQVSRRRGKS--TDWEVIADYKSAPDTLRSKGAQGGAYRFIDTPPEATGTWVYRVSDIDNSGEVSDLSQILVEFESEAERKRQLLVLAALIGTLLLIGTVTSML-DPL 295          
BLAST of NO20G01790 vs. NCBI_GenBank
Match: EJK63740.1 (hypothetical protein THAOC_15587 [Thalassiosira oceanica])

HSP 1 Score: 99.4 bits (246), Expect = 1.800e-17
Identity = 64/188 (34.04%), Postives = 94/188 (50.00%), Query Frame = 0
Query:   78 ADGKAYAPWM-MNQIDVEASARXXXXXXXXXXXXXXXVD--TGDVF-DPQGKEAS-VGLKYRVINERDVELGWLTGEEKDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVEPGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVLAFFGALVLGGVVASFLYEPL 261
            A G  YAPWM +++ D E                       TG++F D Q +E S  GL Y++  + DVEL W T  E++  G+ I R+RA     EF  + S++ + PL +KG EGG Y Y+D    PG +VYRIT++D       +CQ+ VEV+   E+       A FG   +  VV   + +P+
Sbjct:  128 AAGVEYAPWMRISEADEEKIRVVMKERTEARRKRQEQARDVTGNLFRDSQAQELSGTGLTYKLF-DGDVELSWATKSERNTKGFTIKRRRAKTD--EFTTLVSYEDYGPLASKGDEGGIYKYLDTTAGPGGWVYRITEEDTFGGSADICQALVEVETEEEQQAALFAAAGFGLFAVLAVVGGIMVDPM 312          
BLAST of NO20G01790 vs. NCBI_GenBank
Match: XP_002288837.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94273.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 99.4 bits (246), Expect = 1.800e-17
Identity = 61/167 (36.53%), Postives = 87/167 (52.10%), Query Frame = 0
Query:   72 MRGMFNADGKAYAPWMMNQIDVEASARXXXXXXXXXXXXXXXVD---TGDVF-DPQGKEAS-VGLKYRVINERDVELGWLTGEEKDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVEPGQYVYRITDQDKASKRTLLCQSGVEVQAPGEK 234
            M  + N +G  YAPWM    D E   R                    TG++F D Q +E S  GL Y++I + +VEL W T  E D  G+I+  KR  A   +++ IAS+K + PL +KG EGG Y Y+D    PG +VYR++++D    +  +CQ  VEVQ   E+
Sbjct:   53 MSNLRNENGVDYAPWMGISEDDENKIRALMKERTAARRARELQARDVTGNLFRDSQAQELSGTGLSYKII-DGEVELEWATKSEMDTKGFIV--KRRAAKTNDYDVIASYKDWGPLASKGKEGGIYRYLDSTATPGGWVYRVSEEDSMGNQADICQCLVEVQTEDEQ 216          
The following BLAST results are available for this feature:
BLAST of NO20G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15
Match NameE-valueIdentityDescription
EWM22043.11.000e-8975.86hypothetical protein Naga_100052g8 [Nannochloropsi... [more]
CBJ29161.14.300e-2737.04conserved unknown protein [Ectocarpus siliculosus][more]
KOO24795.11.800e-2536.98peptidase s8 s53 subtilisin kexin sedolisin [Chrys... [more]
XP_009034292.12.300e-2533.33hypothetical protein AURANDRAFT_62132 [Aureococcus... [more]
GAX21043.13.200e-2236.92hypothetical protein FisN_1Lh285 [Fistulifera sola... [more]
GAX12352.13.200e-2236.92hypothetical protein FisN_1Hh285 [Fistulifera sola... [more]
XP_005707531.13.500e-2132.28hypothetical protein Gasu_17720 [Galdieria sulphur... [more]
XP_005537421.14.300e-1935.26hypothetical protein CYME_CMN316C [Cyanidioschyzon... [more]
EJK63740.11.800e-1734.04hypothetical protein THAOC_15587 [Thalassiosira oc... [more]
XP_002288837.11.800e-1736.53predicted protein [Thalassiosira pseudonana CCMP13... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002718NSK002718Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01790.1NO20G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594883gene_6398Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100052g8gene8379Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01790.1NO20G01790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01790 ID=NO20G01790|Name=NO20G01790|organism=Nannochloropsis oceanica|type=gene|length=1096bp
ATGCGCTTCTTCCTAGCGGGCGTGCTGCTCTTAATGCTTCCGTTTTTGGC
GCTGGGTTTCGTGCCACGCCTGTCCAAGAAGGGCCTAGCAATCAAGgtaa
atgaggcattgacttgaagggggctgcgggctaagggaaggataatgtca
gtgaggtatagaaaatgtgtgtcgaagcccgtcgtctctgacacctctct
acccccgccctcgttgcacgccttctcaaacctcaaagATTGGCAGCCCT
GCATTGAAGGCAAGACTCGCCGGTGTGACGTCCTTGTCGGCCAAGATGAG
CAAGAAGGAGGAGGAGGAGGAGGAGAAGGAGATCCAGGAGGAGATCGAGC
GGAAGATGCGAGGCATGTTTAATGCGGACGGTAAGGCCTATGCCCCTTGG
ATGATGAACCAGATCGACGTTGAGGCCAGCGCTCGCGCGATTCGGGCCCG
CAAGCGTCGAGAAAGGGAGCAGGCCGAAGCTGTTGACACGGGTGATGTGT
TTGATCCACAAGGGAAGGAGGCCTCGGTGGGCTTGAAGTACCGCGTAATA
AACGAGCGGGACGTGGAGCTTGGGgtaagttggggagaaacaaaaggaga
tttgacagaggaatgcgtaacgctaagtgtacacttcttttttgtgtgaa
gcgtggaatagtctgtcgatgattttcctcttaccaagactgtactactt
ttccttactcactcccgacccacccccctaccaatcccgcagTGGCTAAC
CGGCGAGGAGAAGGACAATGTCGGGTACATCATCTTCCGGAAGCGCGCCG
ACGCACCTGGGGCTGAATTTGAGGAGATCGCTTCGTTCAAGACCTTCCCC
CCGCTCAATACCAAGGGCCCTGAAGGAGGGTTCTACTCGTATGTGGACGA
GGGCGTGGAGCCGGGACAGTACGTGTATAGGATCACGGACCAAGACAAGG
CTAGCAAGCGGACGCTGCTGTGTCAGAGCGGGGTGGAAGTGCAAGCCCCC
GGGGAGAAGCTCCGAAATACTCTTGTGCTGGCTTTTTTCGGAGCCCTGGT
GTTGGGCGGGGTGGTGGCCTCGTTCTTGTACGAGCCTTTGCAGTAG
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protein sequence of NO20G01790.1

>NO20G01790.1-protein ID=NO20G01790.1-protein|Name=NO20G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MRFFLAGVLLLMLPFLALGFVPRLSKKGLAIKIGSPALKARLAGVTSLSA
KMSKKEEEEEEKEIQEEIERKMRGMFNADGKAYAPWMMNQIDVEASARAI
RARKRREREQAEAVDTGDVFDPQGKEASVGLKYRVINERDVELGWLTGEE
KDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVE
PGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVLAFFGALVLGG
VVASFLYEPLQ*
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Synonyms
Publications