NO20G01790.1, NO20G01790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01790.1
Unique NameNO20G01790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length786
Alignment locationchr20:540052..541147 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:540052..541147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01790.1 vs.
Match: EWM22043.1 (hypothetical protein Naga_100052g8 [Nannochloropsis gaditana])

HSP 1 Score: 400.6 bits (1028), Expect = 3.800e-108
Identity = 201/261 (77.01%), Postives = 227/261 (86.97%), Query Frame = 0 
Query:    1 MRFFLAGVLLLMLPFLALGFVPRLSKKGLAIKIGSPALKARLAGVTSLSAKMSKKEEEEEEKEIQEEIERKMRGMFNADGKAYAPWMMNQIDVEASARAIRARKRREREQAEAVDTGDVFDPQGKEASVGLKYRVINERDVELGWLTGEEKDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVEPGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVLAFFGALVLGGVVASFLYEPLQ 262
            M   LA  L L LP L LGF+P L +  L  KI      +++    +LS K++K+EEE+EE+EIQEEIERKMRGM NA+GK YAPWMM+QID+EASARAIRARKRREREQA AVDTGDVFDPQGKEASVGLKYRVIN+RDVELGWLTGEEKDN+GYIIFRKRAD PGAEFEE+ASFKTFPPLN+KGPEGGFYSYVD+G+EPGQY+YR+TDQDK +KRTLLCQSGVEVQ+ GEKLRNT VLA FGALV+GGVVASF+YEPLQ
Sbjct:    1 MTRLLAAFLFLSLPLLVLGFLPSLPRSSLTSKISGLTFTSKVGDKCALSVKLTKEEEEQEEREIQEEIERKMRGMLNAEGKPYAPWMMDQIDLEASARAIRARKRREREQASAVDTGDVFDPQGKEASVGLKYRVINDRDVELGWLTGEEKDNIGYIIFRKRADEPGAEFEEVASFKTFPPLNSKGPEGGFYSYVDQGLEPGQYLYRVTDQDKKNKRTLLCQSGVEVQSSGEKLRNTAVLALFGALVVGGVVASFVYEPLQ 261
The following BLAST results are available for this feature:
BLAST of NO20G01790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22043.13.800e-10877.01hypothetical protein Naga_100052g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01790NO20G01790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01790.1NO20G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01790.1.cds1NO20G01790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01790.1.cds2NO20G01790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01790.1.cds3NO20G01790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01790.1 ID=NO20G01790.1|Name=NO20G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=786bp
ATGCGCTTCTTCCTAGCGGGCGTGCTGCTCTTAATGCTTCCGTTTTTGGC
GCTGGGTTTCGTGCCACGCCTGTCCAAGAAGGGCCTAGCAATCAAGATTG
GCAGCCCTGCATTGAAGGCAAGACTCGCCGGTGTGACGTCCTTGTCGGCC
AAGATGAGCAAGAAGGAGGAGGAGGAGGAGGAGAAGGAGATCCAGGAGGA
GATCGAGCGGAAGATGCGAGGCATGTTTAATGCGGACGGTAAGGCCTATG
CCCCTTGGATGATGAACCAGATCGACGTTGAGGCCAGCGCTCGCGCGATT
CGGGCCCGCAAGCGTCGAGAAAGGGAGCAGGCCGAAGCTGTTGACACGGG
TGATGTGTTTGATCCACAAGGGAAGGAGGCCTCGGTGGGCTTGAAGTACC
GCGTAATAAACGAGCGGGACGTGGAGCTTGGGTGGCTAACCGGCGAGGAG
AAGGACAATGTCGGGTACATCATCTTCCGGAAGCGCGCCGACGCACCTGG
GGCTGAATTTGAGGAGATCGCTTCGTTCAAGACCTTCCCCCCGCTCAATA
CCAAGGGCCCTGAAGGAGGGTTCTACTCGTATGTGGACGAGGGCGTGGAG
CCGGGACAGTACGTGTATAGGATCACGGACCAAGACAAGGCTAGCAAGCG
GACGCTGCTGTGTCAGAGCGGGGTGGAAGTGCAAGCCCCCGGGGAGAAGC
TCCGAAATACTCTTGTGCTGGCTTTTTTCGGAGCCCTGGTGTTGGGCGGG
GTGGTGGCCTCGTTCTTGTACGAGCCTTTGCAGTAG
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protein sequence of NO20G01790.1

>NO20G01790.1-protein ID=NO20G01790.1-protein|Name=NO20G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MRFFLAGVLLLMLPFLALGFVPRLSKKGLAIKIGSPALKARLAGVTSLSA
KMSKKEEEEEEKEIQEEIERKMRGMFNADGKAYAPWMMNQIDVEASARAI
RARKRREREQAEAVDTGDVFDPQGKEASVGLKYRVINERDVELGWLTGEE
KDNVGYIIFRKRADAPGAEFEEIASFKTFPPLNTKGPEGGFYSYVDEGVE
PGQYVYRITDQDKASKRTLLCQSGVEVQAPGEKLRNTLVLAFFGALVLGG
VVASFLYEPLQ*
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mRNA from alignment at chr20:540052..541147-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01790.1 ID=NO20G01790.1|Name=NO20G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1096bp|location=Sequence derived from alignment at chr20:540052..541147- (Nannochloropsis oceanica)
ATGCGCTTCTTCCTAGCGGGCGTGCTGCTCTTAATGCTTCCGTTTTTGGC
GCTGGGTTTCGTGCCACGCCTGTCCAAGAAGGGCCTAGCAATCAAGGTAA
ATGAGGCATTGACTTGAAGGGGGCTGCGGGCTAAGGGAAGGATAATGTCA
GTGAGGTATAGAAAATGTGTGTCGAAGCCCGTCGTCTCTGACACCTCTCT
ACCCCCGCCCTCGTTGCACGCCTTCTCAAACCTCAAAGATTGGCAGCCCT
GCATTGAAGGCAAGACTCGCCGGTGTGACGTCCTTGTCGGCCAAGATGAG
CAAGAAGGAGGAGGAGGAGGAGGAGAAGGAGATCCAGGAGGAGATCGAGC
GGAAGATGCGAGGCATGTTTAATGCGGACGGTAAGGCCTATGCCCCTTGG
ATGATGAACCAGATCGACGTTGAGGCCAGCGCTCGCGCGATTCGGGCCCG
CAAGCGTCGAGAAAGGGAGCAGGCCGAAGCTGTTGACACGGGTGATGTGT
TTGATCCACAAGGGAAGGAGGCCTCGGTGGGCTTGAAGTACCGCGTAATA
AACGAGCGGGACGTGGAGCTTGGGGTAAGTTGGGGAGAAACAAAAGGAGA
TTTGACAGAGGAATGCGTAACGCTAAGTGTACACTTCTTTTTTGTGTGAA
GCGTGGAATAGTCTGTCGATGATTTTCCTCTTACCAAGACTGTACTACTT
TTCCTTACTCACTCCCGACCCACCCCCCTACCAATCCCGCAGTGGCTAAC
CGGCGAGGAGAAGGACAATGTCGGGTACATCATCTTCCGGAAGCGCGCCG
ACGCACCTGGGGCTGAATTTGAGGAGATCGCTTCGTTCAAGACCTTCCCC
CCGCTCAATACCAAGGGCCCTGAAGGAGGGTTCTACTCGTATGTGGACGA
GGGCGTGGAGCCGGGACAGTACGTGTATAGGATCACGGACCAAGACAAGG
CTAGCAAGCGGACGCTGCTGTGTCAGAGCGGGGTGGAAGTGCAAGCCCCC
GGGGAGAAGCTCCGAAATACTCTTGTGCTGGCTTTTTTCGGAGCCCTGGT
GTTGGGCGGGGTGGTGGCCTCGTTCTTGTACGAGCCTTTGCAGTAG
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Coding sequence (CDS) from alignment at chr20:540052..541147-

>NO20G01790.1 ID=NO20G01790.1|Name=NO20G01790.1|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr20:540052..541147- (Nannochloropsis oceanica)
ATGCGCTTCTTCCTAGCGGGCGTGCTGCTCTTAATGCTTCCGTTTTTGGC
GCTGGGTTTCGTGCCACGCCTGTCCAAGAAGGGCCTAGCAATCAAGATTG
GCAGCCCTGCATTGAAGGCAAGACTCGCCGGTGTGACGTCCTTGTCGGCC
AAGATGAGCAAGAAGGAGGAGGAGGAGGAGGAGAAGGAGATCCAGGAGGA
GATCGAGCGGAAGATGCGAGGCATGTTTAATGCGGACGGTAAGGCCTATG
CCCCTTGGATGATGAACCAGATCGACGTTGAGGCCAGCGCTCGCGCGATT
CGGGCCCGCAAGCGTCGAGAAAGGGAGCAGGCCGAAGCTGTTGACACGGG
TGATGTGTTTGATCCACAAGGGAAGGAGGCCTCGGTGGGCTTGAAGTACC
GCGTAATAAACGAGCGGGACGTGGAGCTTGGGTGGCTAACCGGCGAGGAG
AAGGACAATGTCGGGTACATCATCTTCCGGAAGCGCGCCGACGCACCTGG
GGCTGAATTTGAGGAGATCGCTTCGTTCAAGACCTTCCCCCCGCTCAATA
CCAAGGGCCCTGAAGGAGGGTTCTACTCGTATGTGGACGAGGGCGTGGAG
CCGGGACAGTACGTGTATAGGATCACGGACCAAGACAAGGCTAGCAAGCG
GACGCTGCTGTGTCAGAGCGGGGTGGAAGTGCAAGCCCCCGGGGAGAAGC
TCCGAAATACTCTTGTGCTGGCTTTTTTCGGAGCCCTGGTGTTGGGCGGG
GTGGTGGCCTCGTTCTTGTACGAGCCTTTGCAGTAG
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Synonyms
Publications