NO20G01680, NO20G01680 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO20G01680 vs. NCBI_GenBank
Match: EWM22071.1 (hypothetical protein Naga_100244g5 [Nannochloropsis gaditana]) HSP 1 Score: 446.8 bits (1148), Expect = 5.300e-122 Identity = 237/323 (73.37%), Postives = 253/323 (78.33%), Query Frame = 0 Query: 40 SSTMKVLYSMAALLLAAAPARAGLSLS----------------------------------------------------------VTATDTTVKDLSSLNLEGAVETFLADDVIVGGTYNYAAAVAKPEEIYIKKSFDVKMGDLALHARYRLPDQVAALTATLKRNADYIRAAFNTDSVVERVEASKSFTLAGDRKLSLTPAWNQDTKAFELTVAQDIQAGKTNAVLELSQADNDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPKTATLSFKRKFTFQ 305 S MK++YSMAALLLAAAPARAGLSLS VTATDTTVKDLS+LNLEGAVET LADDV+VGGTYNY AAVAKPEE+YIKK+FDVK+GDLAL ARYRLP QVAALTATL+RNADYIRAAFNTDSVVERVE SK F+L G+R+L+LTPAW+Q T+AFELTVAQDIQAGKTNAVLELSQAD DGKLT NHQVDDANTISPTLSLKRGYLTYQWTH+LGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEP+TATLSFKRKFTFQ Sbjct: 26 SQAMKIIYSMAALLLAAAPARAGLSLSVRLPEIKCSLATHMHELSFLIVSGASVKRTDVHHLLSVIKPASMLSTVVCFNLPVTLQVTATDTTVKDLSTLNLEGAVETLLADDVVVGGTYNYNAAVAKPEEVYIKKAFDVKLGDLALDARYRLPTQVAALTATLRRNADYIRAAFNTDSVVERVEGSKRFSLPGERQLALTPAWDQSTRAFELTVAQDIQAGKTNAVLELSQADKDGKLTLNHQVDDANTISPTLSLKRGYLTYQWTHLLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPRTATLSFKRKFTFQ 348
BLAST of NO20G01680 vs. NCBI_GenBank
Match: XP_009032939.1 (hypothetical protein AURANDRAFT_70645 [Aureococcus anophagefferens] >EGB11815.1 hypothetical protein AURANDRAFT_70645 [Aureococcus anophagefferens]) HSP 1 Score: 103.2 bits (256), Expect = 1.400e-18 Identity = 65/242 (26.86%), Postives = 117/242 (48.35%), Query Frame = 0 Query: 67 VTATDTTVKDLSSLNLEGAVETFLADDVIVGGTYNYAAAVAKPEEIYIKKSFDVKMG--DLALHARYRLPDQVAALTATLKRNADYIRAAFNT--DSVVERVEASKSFTLAGDRKLSLTPAWNQDTKAFELTVAQDIQAGKTNAVLELSQAD------NDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPKTATLSFK 299 V DT V + + NLEG VET ++D + G TY +A P+ ++ + + + G L + A Y + A + +++ A F++ +++ E S+ F++ G R L++ PA+N + +T + + T+ L+L D G L+ +H ++ N+I PT +L G TY++T L A+L +P +++ W D G G W T +P +P A++S K Sbjct: 1368 VNIKDTAVSSIEAANLEGEVETQISDQISAGATYEQNSAKFSPKTLFTRWTANTAKGGDPLEVTATYNVASNTAEVDVEYEKSGSTFTANFDSARKALITAAEVSRDFSVEG-RNLNVAPAYNFVSGVSSVT-SNLALSDDTSVELKLDSDDVGNRDALTGTLSIDHNINGKNSIKPTFALNSGSATYEYTRKLDGDAELSVAANPGKSIEIEWDDAGSKGLWTTNVKMPWGKPVGASVSVK 1607
BLAST of NO20G01680 vs. NCBI_GenBank
Match: CBN76975.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 85.9 bits (211), Expect = 2.400e-13 Identity = 68/247 (27.53%), Postives = 115/247 (46.56%), Query Frame = 0 Query: 62 GLSLSVTATDTTVKD-LSSLNLEGAVETFLADDVIVGGTYNYAAAVAKPEEIYIKKSFDVKMGD---LALHARYRLPDQVAALTATLKRNADYIRAAFNT-DSVVERVEASKSFTLAGDRKLSLTPAWNQDTKAFELTVAQDIQAGKTNAVLELSQADNDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPL-KEPKTATLSFKRKFT 303 G + ++ +D ++ D + SLNLEG + + D+V G Y + P +++ + D +GD L A + + A + + D + F+T DS + + +K L G RK+ + P + K E+ VA ++ T+A L ++ A++ L H++DD N ISP + LK G + + LGD ++ T +V W G WV + N+PL T +SFKR T Sbjct: 53 GPTFTIDVSDHSLSDGVGSLNLEGRFQREVVDNVDCGVVYKFNECRGMPTSLWVSTTQD--LGDDMTANLRADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITKHLDLNG-RKVIVQPTVDVQGKTGEVVVAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQ---RENVDWE--YLEGAWVVKGNVPLTSNGATGAISFKRSIT 291
BLAST of NO20G01680 vs. NCBI_GenBank
Match: XP_009042378.1 (expressed protein, partial [Aureococcus anophagefferens] >EGB02923.1 expressed protein, partial [Aureococcus anophagefferens]) HSP 1 Score: 82.4 bits (202), Expect = 2.600e-12 Identity = 58/244 (23.77%), Postives = 107/244 (43.85%), Query Frame = 0 Query: 67 VTATDTTVKDLSSLNLEGAVETFLADDVIVGGTYNYAAAVAKPEEIYIKKSFDVKMGD-LALHARYRLPDQVAALTATLKRNADYIRAAFNT--DSVVERVEASKSFTLAGDRKLSLTPAWNQDTKAFELTVAQDIQAGKTNAVLELSQADNDGK------LTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPKTATLSFKRKF 302 V + ++ + + NLEG VET ++D + G TY+ +A P+ ++ + + K D L + + + DQ A + ++ FN+ S++ S+ F++ G R +++ P++N +T T+ L L AD + + +H + N+I T +L G TY++ LG A L P +++ W + G G W T +P +P A +S F Sbjct: 1 VNIKEASLLSVEATNLEGEVETRISDQIAAGATYDQNSAQFAPKALFTR--WTAKGSDPLEVTGTFNIADQSAEVDVKYEKLGSKFGVNFNSARSSLITAARTSRDFSVEG-RTINVAPSYN------FVTGVSSALTSDTSVELALDSADVADRDALQSVVCIDHSFNGKNSIKHTFALNSGVSTYEYKRKLGGDAALSVAAHPGKSVEIEWDEVGTTGLWTTNVRLPWGKPDRAQVSLAMDF 235
BLAST of NO20G01680 vs. NCBI_GenBank
Match: XP_002183115.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45333.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 74.3 bits (181), Expect = 7.200e-10 Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 0 Query: 201 AGKTNAVLELSQADNDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDP-GKGGEWVTRANIPLK----EPKTATLSFKRKFTF 304 A +T AVL L + DN LT H +D +TI+P +SL +TY W L G +QT +DP +D+ ++W+DP GG W T +PL+ + A + +R+F F Sbjct: 235 AARTKAVLNL-EYDNP-TLTVLHSLDARHTIAPEISLYNAKITYAWNVALAGGGSVQTKVDPISDIRISWNDPSAAGGSWTTDVRLPLEGTTMQALAADIRVRRQFRF 340
BLAST of NO20G01680 vs. NCBI_GenBank
Match: OEU19778.1 (hypothetical protein FRACYDRAFT_224532 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 66.6 bits (161), Expect = 1.500e-7 Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 0 Query: 203 KTNAVLELSQADNDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLK----EPKTATLSFKRKFTF 304 +T AVL L + DN L+ H +++ NTI+P +SL + YQW L D ++T +DP +D+ VTW+D G+WVT +PL A + +R+F F Sbjct: 206 RTKAVLNL-EYDNP-TLSVIHNLNERNTIAPEISLYDARILYQWNIAL-DSGSIRTKVDPTSDVCVTWTDRSMNGKWVTDVRLPLTGTTLSALAADVKVRRQFNF 307 The following BLAST results are available for this feature:
BLAST of NO20G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G01680 ID=NO20G01680|Name=NO20G01680|organism=Nannochloropsis oceanica|type=gene|length=1377bpback to top protein sequence of NO20G01680.1 >NO20G01680.1-protein ID=NO20G01680.1-protein|Name=NO20G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bpback to top Synonyms
Publications
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