NO20G01680, NO20G01680 (gene) Nannochloropsis oceanica

Overview
NameNO20G01680
Unique NameNO20G01680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1377
Alignment locationchr20:513581..514957 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:513581..514957 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO20G01680 vs. NCBI_GenBank
Match: EWM22071.1 (hypothetical protein Naga_100244g5 [Nannochloropsis gaditana])

HSP 1 Score: 446.8 bits (1148), Expect = 5.300e-122
Identity = 237/323 (73.37%), Postives = 253/323 (78.33%), Query Frame = 0
Query:   40 SSTMKVLYSMAALLLAAAPARAGLSLS----------------------------------------------------------VTATDTTVKDLSSLNLEGAVETFLADDVIVGGTYNYAAAVAKPEEIYIKKSFDVKMGDLALHARYRLPDQVAALTATLKRNADYIRAAFNTDSVVERVEASKSFTLAGDRKLSLTPAWNQDTKAFELTVAQDIQAGKTNAVLELSQADNDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPKTATLSFKRKFTFQ 305
            S  MK++YSMAALLLAAAPARAGLSLS                                                          VTATDTTVKDLS+LNLEGAVET LADDV+VGGTYNY AAVAKPEE+YIKK+FDVK+GDLAL ARYRLP QVAALTATL+RNADYIRAAFNTDSVVERVE SK F+L G+R+L+LTPAW+Q T+AFELTVAQDIQAGKTNAVLELSQAD DGKLT NHQVDDANTISPTLSLKRGYLTYQWTH+LGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEP+TATLSFKRKFTFQ
Sbjct:   26 SQAMKIIYSMAALLLAAAPARAGLSLSVRLPEIKCSLATHMHELSFLIVSGASVKRTDVHHLLSVIKPASMLSTVVCFNLPVTLQVTATDTTVKDLSTLNLEGAVETLLADDVVVGGTYNYNAAVAKPEEVYIKKAFDVKLGDLALDARYRLPTQVAALTATLRRNADYIRAAFNTDSVVERVEGSKRFSLPGERQLALTPAWDQSTRAFELTVAQDIQAGKTNAVLELSQADKDGKLTLNHQVDDANTISPTLSLKRGYLTYQWTHLLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPRTATLSFKRKFTFQ 348          
BLAST of NO20G01680 vs. NCBI_GenBank
Match: XP_009032939.1 (hypothetical protein AURANDRAFT_70645 [Aureococcus anophagefferens] >EGB11815.1 hypothetical protein AURANDRAFT_70645 [Aureococcus anophagefferens])

HSP 1 Score: 103.2 bits (256), Expect = 1.400e-18
Identity = 65/242 (26.86%), Postives = 117/242 (48.35%), Query Frame = 0
Query:   67 VTATDTTVKDLSSLNLEGAVETFLADDVIVGGTYNYAAAVAKPEEIYIKKSFDVKMG--DLALHARYRLPDQVAALTATLKRNADYIRAAFNT--DSVVERVEASKSFTLAGDRKLSLTPAWNQDTKAFELTVAQDIQAGKTNAVLELSQAD------NDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPKTATLSFK 299
            V   DT V  + + NLEG VET ++D +  G TY   +A   P+ ++ + + +   G   L + A Y +    A +    +++     A F++   +++   E S+ F++ G R L++ PA+N  +    +T +    +  T+  L+L   D        G L+ +H ++  N+I PT +L  G  TY++T  L   A+L    +P   +++ W D G  G W T   +P  +P  A++S K
Sbjct: 1368 VNIKDTAVSSIEAANLEGEVETQISDQISAGATYEQNSAKFSPKTLFTRWTANTAKGGDPLEVTATYNVASNTAEVDVEYEKSGSTFTANFDSARKALITAAEVSRDFSVEG-RNLNVAPAYNFVSGVSSVT-SNLALSDDTSVELKLDSDDVGNRDALTGTLSIDHNINGKNSIKPTFALNSGSATYEYTRKLDGDAELSVAANPGKSIEIEWDDAGSKGLWTTNVKMPWGKPVGASVSVK 1607          
BLAST of NO20G01680 vs. NCBI_GenBank
Match: CBN76975.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.9 bits (211), Expect = 2.400e-13
Identity = 68/247 (27.53%), Postives = 115/247 (46.56%), Query Frame = 0
Query:   62 GLSLSVTATDTTVKD-LSSLNLEGAVETFLADDVIVGGTYNYAAAVAKPEEIYIKKSFDVKMGD---LALHARYRLPDQVAALTATLKRNADYIRAAFNT-DSVVERVEASKSFTLAGDRKLSLTPAWNQDTKAFELTVAQDIQAGKTNAVLELSQADNDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPL-KEPKTATLSFKRKFT 303
            G + ++  +D ++ D + SLNLEG  +  + D+V  G  Y +      P  +++  + D  +GD     L A   +  + A +   +    D +   F+T DS +  +  +K   L G RK+ + P  +   K  E+ VA ++    T+A L ++ A++   L   H++DD N ISP + LK G +  +    LGD   ++ T       +V W      G WV + N+PL     T  +SFKR  T
Sbjct:   53 GPTFTIDVSDHSLSDGVGSLNLEGRFQREVVDNVDCGVVYKFNECRGMPTSLWVSTTQD--LGDDMTANLRADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITKHLDLNG-RKVIVQPTVDVQGKTGEVVVAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQ---RENVDWE--YLEGAWVVKGNVPLTSNGATGAISFKRSIT 291          
BLAST of NO20G01680 vs. NCBI_GenBank
Match: XP_009042378.1 (expressed protein, partial [Aureococcus anophagefferens] >EGB02923.1 expressed protein, partial [Aureococcus anophagefferens])

HSP 1 Score: 82.4 bits (202), Expect = 2.600e-12
Identity = 58/244 (23.77%), Postives = 107/244 (43.85%), Query Frame = 0
Query:   67 VTATDTTVKDLSSLNLEGAVETFLADDVIVGGTYNYAAAVAKPEEIYIKKSFDVKMGD-LALHARYRLPDQVAALTATLKRNADYIRAAFNT--DSVVERVEASKSFTLAGDRKLSLTPAWNQDTKAFELTVAQDIQAGKTNAVLELSQADNDGK------LTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPKTATLSFKRKF 302
            V   + ++  + + NLEG VET ++D +  G TY+  +A   P+ ++ +  +  K  D L +   + + DQ A +    ++        FN+   S++     S+ F++ G R +++ P++N       +T         T+  L L  AD   +      +  +H  +  N+I  T +L  G  TY++   LG  A L     P   +++ W + G  G W T   +P  +P  A +S    F
Sbjct:    1 VNIKEASLLSVEATNLEGEVETRISDQIAAGATYDQNSAQFAPKALFTR--WTAKGSDPLEVTGTFNIADQSAEVDVKYEKLGSKFGVNFNSARSSLITAARTSRDFSVEG-RTINVAPSYN------FVTGVSSALTSDTSVELALDSADVADRDALQSVVCIDHSFNGKNSIKHTFALNSGVSTYEYKRKLGGDAALSVAAHPGKSVEIEWDEVGTTGLWTTNVRLPWGKPDRAQVSLAMDF 235          
BLAST of NO20G01680 vs. NCBI_GenBank
Match: XP_002183115.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45333.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 74.3 bits (181), Expect = 7.200e-10
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 0
Query:  201 AGKTNAVLELSQADNDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDP-GKGGEWVTRANIPLK----EPKTATLSFKRKFTF 304
            A +T AVL L + DN   LT  H +D  +TI+P +SL    +TY W   L  G  +QT +DP +D+ ++W+DP   GG W T   +PL+    +   A +  +R+F F
Sbjct:  235 AARTKAVLNL-EYDNP-TLTVLHSLDARHTIAPEISLYNAKITYAWNVALAGGGSVQTKVDPISDIRISWNDPSAAGGSWTTDVRLPLEGTTMQALAADIRVRRQFRF 340          
BLAST of NO20G01680 vs. NCBI_GenBank
Match: OEU19778.1 (hypothetical protein FRACYDRAFT_224532 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 66.6 bits (161), Expect = 1.500e-7
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 0
Query:  203 KTNAVLELSQADNDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLK----EPKTATLSFKRKFTF 304
            +T AVL L + DN   L+  H +++ NTI+P +SL    + YQW   L D   ++T +DP +D+ VTW+D    G+WVT   +PL         A +  +R+F F
Sbjct:  206 RTKAVLNL-EYDNP-TLSVIHNLNERNTIAPEISLYDARILYQWNIAL-DSGSIRTKVDPTSDVCVTWTDRSMNGKWVTDVRLPLTGTTLSALAADVKVRRQFNF 307          
The following BLAST results are available for this feature:
BLAST of NO20G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM22071.15.300e-12273.37hypothetical protein Naga_100244g5 [Nannochloropsi... [more]
XP_009032939.11.400e-1826.86hypothetical protein AURANDRAFT_70645 [Aureococcus... [more]
CBN76975.12.400e-1327.53conserved unknown protein [Ectocarpus siliculosus][more]
XP_009042378.12.600e-1223.77expressed protein, partial [Aureococcus anophageff... [more]
XP_002183115.17.200e-1037.04predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU19778.11.500e-736.19hypothetical protein FRACYDRAFT_224532 [Fragilario... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002702NSK002702Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01680.1NO20G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594843gene_6386Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100244g5gene8367Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01680.1NO20G01680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01680 ID=NO20G01680|Name=NO20G01680|organism=Nannochloropsis oceanica|type=gene|length=1377bp
ATGCACAAAGAGCCCCGAAGACCTTTTCAGTACCTATACTTGTTCGAAgt
aagtgtatcttgccctccgcacctgtgtggaggtgccgcggcaggggtga
ggttttagcagatgtgcctcgtatttgtgttttgccgccgcttgacacct
tcgtccttctgcccttacgtcttgatttggacgggagttagggttagatc
aaaggtccccctgtttgccagcgggccacaactccgaatcacgaacaaca
cccgcatctcactgggggatcctacttctctcctctcactccagAACACA
GGCCGTCGCATCGTCCTACAAGCTTTCTTCTACCAACCTTCTTACAGCAA
CAACCAACTTGCCTCAAGCACCATGAAGGTTTTGTACTCCATGGCAGCCC
TGCTGCTCGCTGCTGCCCCGGCAAGGGCCGGCCTAAGCCTCTCGgtaatc
aaacttccacagattaaatgctccctcgcggtgagcgctaccccgcagtg
tgtttgcatttctgatcagtgtatctcctttctcaactctcttctcccca
atcgcttcccctcttcttatttcttttccctccgccgcctcctcctcctc
atcctatgcttacccctcaccccctccaccccctcccttctttcctcata
ttctatccagGTGACGGCCACCGACACCACCGTCAAGGACCTCTCCTCCC
TCAATCTGGAAGGGGCGGTAGAGACCTTCCTGGCCGACGATGTCATAGTG
GGGGGCACCTACAACTACGCCGCCGCCGTGGCAAAGCCCGAGGAGATCTA
CATCAAGAAGTCATTCGACGTCAAGATGGGGGATTTGGCCTTGCATGCTC
GCTACCGTTTGCCGGATCAGGTGGCGGCCTTGACGGCGACCTTGAAGCGG
AATGCGGATTATATCCGCGCGGCGTTCAACACAGACTCGGTGGTAGAGCG
GGTGGAGGCGTCCAAGAGCTTCACCCTTGCGGGAGACCGTAAACTGTCGT
TGACCCCTGCGTGGAACCAGGATACCAAGGCCTTTGAGCTGACCGTGGCG
CAGGACATTCAGGCTGGAAAGACTAATGCAGTGCTGGAGCTGAGCCAGGC
TGACAATGATGGGAAACTCACCTTCAACCACCAGGTCGATGACGCCAACA
CCATCTCCCCCACCCTTAGCCTCAAGCGTGGCTACCTCACCTACCAGTGG
ACGCACATGTTAGGGGACGGCGCCAAGCTGCAGACGACGTTGGACCCGTT
CACTGACTTGGATGTGACTTGGTCTGACCCGGGCAAGGGCGGTGAGTGGG
TGACTCGCGCCAACATCCCCCTCAAAGAGCCCAAGACCGCGACCCTCTCC
TTTAAGCGCAAGTTTACCTTCCAGTAA
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protein sequence of NO20G01680.1

>NO20G01680.1-protein ID=NO20G01680.1-protein|Name=NO20G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MHKEPRRPFQYLYLFENTGRRIVLQAFFYQPSYSNNQLASSTMKVLYSMA
ALLLAAAPARAGLSLSVTATDTTVKDLSSLNLEGAVETFLADDVIVGGTY
NYAAAVAKPEEIYIKKSFDVKMGDLALHARYRLPDQVAALTATLKRNADY
IRAAFNTDSVVERVEASKSFTLAGDRKLSLTPAWNQDTKAFELTVAQDIQ
AGKTNAVLELSQADNDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHML
GDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPKTATLSFKRK
FTFQ*
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Synonyms
Publications