NO20G01680.1, NO20G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01680.1
Unique NameNO20G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr20:513581..514957 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:513581..514957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01680.1 vs.
Match: EWM22071.1 (hypothetical protein Naga_100244g5 [Nannochloropsis gaditana])

HSP 1 Score: 434.9 bits (1117), Expect = 2.100e-118
Identity = 217/255 (85.10%), Postives = 235/255 (92.16%), Query Frame = 0 
Query:   50 AALLLAAAPARAGLSLSVTATDTTVKDLSSLNLEGAVETFLADDVIVGGTYNYAAAVAKPEEIYIKKSFDVKMGDLALHARYRLPDQVAALTATLKRNADYIRAAFNTDSVVERVEASKSFTLAGDRKLSLTPAWNQDTKAFELTVAQDIQAGKTNAVLELSQADNDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHMLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPKTATLSFKRKFTFQ 305
            A++L         ++L VTATDTTVKDLS+LNLEGAVET LADDV+VGGTYNY AAVAKPEE+YIKK+FDVK+GDLAL ARYRLP QVAALTATL+RNADYIRAAFNTDSVVERVE SK F+L G+R+L+LTPAW+Q T+AFELTVAQDIQAGKTNAVLELSQAD DGKLT NHQVDDANTISPTLSLKRGYLTYQWTH+LGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEP+TATLSFKRKFTFQ
Sbjct:   94 ASMLSTVVCFNLPVTLQVTATDTTVKDLSTLNLEGAVETLLADDVVVGGTYNYNAAVAKPEEVYIKKAFDVKLGDLALDARYRLPTQVAALTATLRRNADYIRAAFNTDSVVERVEGSKRFSLPGERQLALTPAWDQSTRAFELTVAQDIQAGKTNAVLELSQADKDGKLTLNHQVDDANTISPTLSLKRGYLTYQWTHLLGDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPRTATLSFKRKFTFQ 348
The following BLAST results are available for this feature:
BLAST of NO20G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22071.12.100e-11885.10hypothetical protein Naga_100244g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01680NO20G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01680.1NO20G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01680.1.cds1NO20G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01680.1.cds2NO20G01680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01680.1.cds3NO20G01680.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01680.1 ID=NO20G01680.1|Name=NO20G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ATGCACAAAGAGCCCCGAAGACCTTTTCAGTACCTATACTTGTTCGAAAA
CACAGGCCGTCGCATCGTCCTACAAGCTTTCTTCTACCAACCTTCTTACA
GCAACAACCAACTTGCCTCAAGCACCATGAAGGTTTTGTACTCCATGGCA
GCCCTGCTGCTCGCTGCTGCCCCGGCAAGGGCCGGCCTAAGCCTCTCGGT
GACGGCCACCGACACCACCGTCAAGGACCTCTCCTCCCTCAATCTGGAAG
GGGCGGTAGAGACCTTCCTGGCCGACGATGTCATAGTGGGGGGCACCTAC
AACTACGCCGCCGCCGTGGCAAAGCCCGAGGAGATCTACATCAAGAAGTC
ATTCGACGTCAAGATGGGGGATTTGGCCTTGCATGCTCGCTACCGTTTGC
CGGATCAGGTGGCGGCCTTGACGGCGACCTTGAAGCGGAATGCGGATTAT
ATCCGCGCGGCGTTCAACACAGACTCGGTGGTAGAGCGGGTGGAGGCGTC
CAAGAGCTTCACCCTTGCGGGAGACCGTAAACTGTCGTTGACCCCTGCGT
GGAACCAGGATACCAAGGCCTTTGAGCTGACCGTGGCGCAGGACATTCAG
GCTGGAAAGACTAATGCAGTGCTGGAGCTGAGCCAGGCTGACAATGATGG
GAAACTCACCTTCAACCACCAGGTCGATGACGCCAACACCATCTCCCCCA
CCCTTAGCCTCAAGCGTGGCTACCTCACCTACCAGTGGACGCACATGTTA
GGGGACGGCGCCAAGCTGCAGACGACGTTGGACCCGTTCACTGACTTGGA
TGTGACTTGGTCTGACCCGGGCAAGGGCGGTGAGTGGGTGACTCGCGCCA
ACATCCCCCTCAAAGAGCCCAAGACCGCGACCCTCTCCTTTAAGCGCAAG
TTTACCTTCCAGTAA
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protein sequence of NO20G01680.1

>NO20G01680.1-protein ID=NO20G01680.1-protein|Name=NO20G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MHKEPRRPFQYLYLFENTGRRIVLQAFFYQPSYSNNQLASSTMKVLYSMA
ALLLAAAPARAGLSLSVTATDTTVKDLSSLNLEGAVETFLADDVIVGGTY
NYAAAVAKPEEIYIKKSFDVKMGDLALHARYRLPDQVAALTATLKRNADY
IRAAFNTDSVVERVEASKSFTLAGDRKLSLTPAWNQDTKAFELTVAQDIQ
AGKTNAVLELSQADNDGKLTFNHQVDDANTISPTLSLKRGYLTYQWTHML
GDGAKLQTTLDPFTDLDVTWSDPGKGGEWVTRANIPLKEPKTATLSFKRK
FTFQ*
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mRNA from alignment at chr20:513581..514957+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01680.1 ID=NO20G01680.1|Name=NO20G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1377bp|location=Sequence derived from alignment at chr20:513581..514957+ (Nannochloropsis oceanica)
ATGCACAAAGAGCCCCGAAGACCTTTTCAGTACCTATACTTGTTCGAAGT
AAGTGTATCTTGCCCTCCGCACCTGTGTGGAGGTGCCGCGGCAGGGGTGA
GGTTTTAGCAGATGTGCCTCGTATTTGTGTTTTGCCGCCGCTTGACACCT
TCGTCCTTCTGCCCTTACGTCTTGATTTGGACGGGAGTTAGGGTTAGATC
AAAGGTCCCCCTGTTTGCCAGCGGGCCACAACTCCGAATCACGAACAACA
CCCGCATCTCACTGGGGGATCCTACTTCTCTCCTCTCACTCCAGAACACA
GGCCGTCGCATCGTCCTACAAGCTTTCTTCTACCAACCTTCTTACAGCAA
CAACCAACTTGCCTCAAGCACCATGAAGGTTTTGTACTCCATGGCAGCCC
TGCTGCTCGCTGCTGCCCCGGCAAGGGCCGGCCTAAGCCTCTCGGTAATC
AAACTTCCACAGATTAAATGCTCCCTCGCGGTGAGCGCTACCCCGCAGTG
TGTTTGCATTTCTGATCAGTGTATCTCCTTTCTCAACTCTCTTCTCCCCA
ATCGCTTCCCCTCTTCTTATTTCTTTTCCCTCCGCCGCCTCCTCCTCCTC
ATCCTATGCTTACCCCTCACCCCCTCCACCCCCTCCCTTCTTTCCTCATA
TTCTATCCAGGTGACGGCCACCGACACCACCGTCAAGGACCTCTCCTCCC
TCAATCTGGAAGGGGCGGTAGAGACCTTCCTGGCCGACGATGTCATAGTG
GGGGGCACCTACAACTACGCCGCCGCCGTGGCAAAGCCCGAGGAGATCTA
CATCAAGAAGTCATTCGACGTCAAGATGGGGGATTTGGCCTTGCATGCTC
GCTACCGTTTGCCGGATCAGGTGGCGGCCTTGACGGCGACCTTGAAGCGG
AATGCGGATTATATCCGCGCGGCGTTCAACACAGACTCGGTGGTAGAGCG
GGTGGAGGCGTCCAAGAGCTTCACCCTTGCGGGAGACCGTAAACTGTCGT
TGACCCCTGCGTGGAACCAGGATACCAAGGCCTTTGAGCTGACCGTGGCG
CAGGACATTCAGGCTGGAAAGACTAATGCAGTGCTGGAGCTGAGCCAGGC
TGACAATGATGGGAAACTCACCTTCAACCACCAGGTCGATGACGCCAACA
CCATCTCCCCCACCCTTAGCCTCAAGCGTGGCTACCTCACCTACCAGTGG
ACGCACATGTTAGGGGACGGCGCCAAGCTGCAGACGACGTTGGACCCGTT
CACTGACTTGGATGTGACTTGGTCTGACCCGGGCAAGGGCGGTGAGTGGG
TGACTCGCGCCAACATCCCCCTCAAAGAGCCCAAGACCGCGACCCTCTCC
TTTAAGCGCAAGTTTACCTTCCAGTAA
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Coding sequence (CDS) from alignment at chr20:513581..514957+

>NO20G01680.1 ID=NO20G01680.1|Name=NO20G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr20:513581..514957+ (Nannochloropsis oceanica)
ATGCACAAAGAGCCCCGAAGACCTTTTCAGTACCTATACTTGTTCGAAAA
CACAGGCCGTCGCATCGTCCTACAAGCTTTCTTCTACCAACCTTCTTACA
GCAACAACCAACTTGCCTCAAGCACCATGAAGGTTTTGTACTCCATGGCA
GCCCTGCTGCTCGCTGCTGCCCCGGCAAGGGCCGGCCTAAGCCTCTCGGT
GACGGCCACCGACACCACCGTCAAGGACCTCTCCTCCCTCAATCTGGAAG
GGGCGGTAGAGACCTTCCTGGCCGACGATGTCATAGTGGGGGGCACCTAC
AACTACGCCGCCGCCGTGGCAAAGCCCGAGGAGATCTACATCAAGAAGTC
ATTCGACGTCAAGATGGGGGATTTGGCCTTGCATGCTCGCTACCGTTTGC
CGGATCAGGTGGCGGCCTTGACGGCGACCTTGAAGCGGAATGCGGATTAT
ATCCGCGCGGCGTTCAACACAGACTCGGTGGTAGAGCGGGTGGAGGCGTC
CAAGAGCTTCACCCTTGCGGGAGACCGTAAACTGTCGTTGACCCCTGCGT
GGAACCAGGATACCAAGGCCTTTGAGCTGACCGTGGCGCAGGACATTCAG
GCTGGAAAGACTAATGCAGTGCTGGAGCTGAGCCAGGCTGACAATGATGG
GAAACTCACCTTCAACCACCAGGTCGATGACGCCAACACCATCTCCCCCA
CCCTTAGCCTCAAGCGTGGCTACCTCACCTACCAGTGGACGCACATGTTA
GGGGACGGCGCCAAGCTGCAGACGACGTTGGACCCGTTCACTGACTTGGA
TGTGACTTGGTCTGACCCGGGCAAGGGCGGTGAGTGGGTGACTCGCGCCA
ACATCCCCCTCAAAGAGCCCAAGACCGCGACCCTCTCCTTTAAGCGCAAG
TTTACCTTCCAGTAA
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Synonyms
Publications