NO20G01660, NO20G01660 (gene) Nannochloropsis oceanica

Overview
NameNO20G01660
Unique NameNO20G01660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3423
Alignment locationchr20:504717..508139 -

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Properties
Property NameValue
DescriptionCell division cycle 20, cofactor of APC complex
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:504717..508139 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0097027ubiquitin-protein transferase activator activity
GO:0010997anaphase-promoting complex binding
Vocabulary: Biological Process
TermDefinition
GO:1904668positive regulation of ubiquitin protein ligase activity
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR033010Cdc20/Fizzy
Homology
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: PTQ41682.1 (hypothetical protein MARPO_0033s0088 [Marchantia polymorpha] >PTQ41683.1 hypothetical protein MARPO_0033s0088 [Marchantia polymorpha])

HSP 1 Score: 115.2 bits (287), Expect = 5.400e-22
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAARPS-----GFGRSWASHKTS 108
            S+DT SQVCAL WSQH KE++SSHGFS  QLC+WKYPSM K+ EL GHTAR LHL QSPDG TVVSAAA  +      FG   +S KTS
Sbjct:  385 SIDTHSQVCALQWSQHQKEILSSHGFSQYQLCVWKYPSMVKMAELTGHTARVLHLAQSPDGTTVVSAAADETLRFWKVFGTPPSSKKTS 473
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: DAA64546.1 (TPA_exp: cell division cycle 20 protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 114.4 bits (285), Expect = 9.200e-22
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            S+DTGSQVC+++WS+H +EL SSHG+S NQL LWKYPSM KIKELKGHTAR L+++ SPDG +VVSAAA
Sbjct:  460 SIDTGSQVCSIVWSKHQRELCSSHGYSENQLILWKYPSMTKIKELKGHTARVLNMEMSPDGASVVSAAA 528
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: ETI35983.1 (hypothetical protein F443_17809 [Phytophthora parasitica P1569] >ETI35984.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569])

HSP 1 Score: 114.4 bits (285), Expect = 9.200e-22
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            SVDTGSQVC+LLWS   KEL+SSHG+S N+LCLWKYPSM K+KEL GHT+R LHL  SPDG TVVS AA
Sbjct:  431 SVDTGSQVCSLLWSNTEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGETVVSGAA 499
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: ETI35985.1 (hypothetical protein, variant 2 [Phytophthora parasitica P1569])

HSP 1 Score: 114.4 bits (285), Expect = 9.200e-22
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            SVDTGSQVC+LLWS   KEL+SSHG+S N+LCLWKYPSM K+KEL GHT+R LHL  SPDG TVVS AA
Sbjct:  344 SVDTGSQVCSLLWSNTEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGETVVSGAA 412
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: ETK76218.1 (hypothetical protein L915_17338 [Phytophthora parasitica] >ETK76219.1 hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 114.4 bits (285), Expect = 9.200e-22
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            SVDTGSQVC+LLWS   KEL+SSHG+S N+LCLWKYPSM K+KEL GHT+R LHL  SPDG TVVS AA
Sbjct:  431 SVDTGSQVCSLLWSNTEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGETVVSGAA 499
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: ETK76220.1 (hypothetical protein, variant 2 [Phytophthora parasitica] >ETL29658.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETL82880.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETP05803.1 hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >ETP33913.1 hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 114.4 bits (285), Expect = 9.200e-22
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            SVDTGSQVC+LLWS   KEL+SSHG+S N+LCLWKYPSM K+KEL GHT+R LHL  SPDG TVVS AA
Sbjct:  344 SVDTGSQVCSLLWSNTEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGETVVSGAA 412
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: ETL29656.1 (hypothetical protein L916_17231 [Phytophthora parasitica] >ETL29657.1 hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 114.4 bits (285), Expect = 9.200e-22
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            SVDTGSQVC+LLWS   KEL+SSHG+S N+LCLWKYPSM K+KEL GHT+R LHL  SPDG TVVS AA
Sbjct:  431 SVDTGSQVCSLLWSNTEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGETVVSGAA 499
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: ETL82878.1 (hypothetical protein L917_17064 [Phytophthora parasitica] >ETL82879.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETP05801.1 hypothetical protein F441_17686 [Phytophthora parasitica CJ01A1] >ETP05802.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP33911.1 hypothetical protein F442_17666 [Phytophthora parasitica P10297] >ETP33912.1 hypothetical protein, variant 1 [Phytophthora parasitica P10297] >KUF76123.1 Anaphase-promoting complex subunit cdc20 [Phytophthora nicotianae])

HSP 1 Score: 114.4 bits (285), Expect = 9.200e-22
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            SVDTGSQVC+LLWS   KEL+SSHG+S N+LCLWKYPSM K+KEL GHT+R LHL  SPDG TVVS AA
Sbjct:  431 SVDTGSQVCSLLWSNTEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGETVVSGAA 499
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: ETM36111.1 (hypothetical protein L914_17134 [Phytophthora parasitica] >ETM36112.1 hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 114.4 bits (285), Expect = 9.200e-22
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            SVDTGSQVC+LLWS   KEL+SSHG+S N+LCLWKYPSM K+KEL GHT+R LHL  SPDG TVVS AA
Sbjct:  431 SVDTGSQVCSLLWSNTEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGETVVSGAA 499
[Close]
BLAST of NO20G01660 vs. NCBI_GenBank
Match: ETM36113.1 (hypothetical protein, variant 2 [Phytophthora parasitica] >ETO64704.1 hypothetical protein, variant 2 [Phytophthora parasitica P1976])

HSP 1 Score: 114.4 bits (285), Expect = 9.200e-22
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            SVDTGSQVC+LLWS   KEL+SSHG+S N+LCLWKYPSM K+KEL GHT+R LHL  SPDG TVVS AA
Sbjct:  344 SVDTGSQVCSLLWSNTEKELLSSHGYSQNELCLWKYPSMTKVKELTGHTSRVLHLAASPDGETVVSGAA 412
The following BLAST results are available for this feature:
BLAST of NO20G01660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PTQ41682.15.400e-2266.29hypothetical protein MARPO_0033s0088 [Marchantia p... [more]
DAA64546.19.200e-2272.46TPA_exp: cell division cycle 20 protein [Phaeodact... [more]
ETI35983.19.200e-2275.36hypothetical protein F443_17809 [Phytophthora para... [more]
ETI35985.19.200e-2275.36hypothetical protein, variant 2 [Phytophthora para... [more]
ETK76218.19.200e-2275.36hypothetical protein L915_17338 [Phytophthora para... [more]
ETK76220.19.200e-2275.36hypothetical protein, variant 2 [Phytophthora para... [more]
ETL29656.19.200e-2275.36hypothetical protein L916_17231 [Phytophthora para... [more]
ETL82878.19.200e-2275.36hypothetical protein L917_17064 [Phytophthora para... [more]
ETM36111.19.200e-2275.36hypothetical protein L914_17134 [Phytophthora para... [more]
ETM36113.19.200e-2275.36hypothetical protein, variant 2 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01660.1NO20G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01660.1NO20G01660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01660 ID=NO20G01660|Name=NO20G01660|organism=Nannochloropsis oceanica|type=gene|length=3423bp
ATGGCTTCCTACATGTTATCTTTATCATATAGACGTCGTACAGTGGTGCG
GAGAAGTTGTCAAACGCCCAGgtagcacaagcataggaaagcctcagtcg
cctcctcgcctcggggggagggactctcgatcgtaccatcaagttttgga
acacccacacaggctccctcctcaacagCGTGGACACTGGCAGTCAGgta
ggcaagccctccctccctccctccctttctccctcccttccatctttcct
tgcttcctcctctctctggccagcatgatccgcacacaaatcggtctgtg
aaagtagtcgtctatttattgccctcaatctaatccttatgtcattatca
ccacacaatgaatgatgagtctacttccacgcaataccaatcttattaca
ttacacgcggtaccaatctaataacattacataaaattacacgcggtgcc
aatctaatcacattacccttaatttcgcgacagGTCTGTGCCTTGCTCTG
GTCCCAGCACAACAAGGAGCTCGTCTCCTCCCACGGCTTCTCGGGAAACC
AACTCTGgtatgtcccctccctccctccctccctccctccctccctccct
tctcatgttaaaccctttttaatgcccctacacgatgatgtttgcttttt
ttgatcctccctccctccctccctccatccctccctccttccctcgctcc
ctcagCCTTTGGAAGTACCCCTCCATGGCCAAGATCAAGGAGCTCAAAGG
ACACACGGCGCGATTCCTCCACCTCGATCAGgtacagagcgccctccttc
cctccctacctcgctctctatatccctccctcttgtcctccctgcttctc
cccttttgtatgtcgcacaggcactggcgagtcctcgtaccgtcaacctc
ccctccctcccctccctcccttccctcctcgacctactgcagtccaacac
acttctgcccatactcactgactaaccctcctctctctccctccatccct
cagTCCCCGGACGGGATGACAGTTGTCTCAGCAGCCGCGAGACCCTCCGG
TTTTGGGAGATCATGGGCCAGCCACAAGgtagggagggagggagggaggg
agggagggagggagggaagaaaagccaggagggtgttgggcttgccatat
ccgctcactccactttttcatgtcgctatttatcattcatgtatttatcg
atctctcctttccaccatcttttcctcagACAAGCAAAAGCAATTCGTGG
GAAAAGGCATCTTGCCTCCTCCTCTCAACACCATCAGCATGGCTCGCTCC
TCATCTGGGACATTTGGTGGAATCAGATAAAGGGGGAAGGAGGGAGGGGG
GGGAGGAGGGGGGGAAGGAGGGGGGGAGGGCGAAAGAGCAAgtatgcaat
tatctctggaagcgtatgtgtgtgagagtgtctgtgttactttgtatagg
gtagaaggaaggttctctgatcttgctagcagcagcagctgctgctgcag
tataagtagtgctgcgacaaacatctctggcagcagtaccatgacagcag
agagagctgcagcggtaagagtgagagaagcagaaatagtcatgggcatt
ccaaatgaaatatgggaatcgggaaaggcaggtcaagtgttcccggactg
ataagtggtacgagaaaaacaaggcgtgtatatgtattgtctcacgggga
agatggaagtcgaggaagtttaggcaatcctcttgtctttagatcgagtt
ggaccacggatggacatggctttggatggaccgagatatcatatattttg
tatatatatgcttgtataatatataccaactatgtatatgttttgtttga
tcgacatttaggagcgtgtacatgaccatcggcatgtagcggcaaagatt
gcggatcggtggggagaggactatcatcaagtagagatcgaactcaatcg
tgcagaactaccctccaccttcctgtttccctgggcatgggtatggtaag
aagacaggttcatcatgatagggaagggatatgtgggagccagtgcaaca
tcagcaccagcatcaacaccggcagttggaggatgggaaggaggaggggg
aggaagacgagggaaaagaacccgggctacggaagcagcagcagccgccg
gcacacagctgaccatacgggtggcagtcgcagaagcacgagcccaggca
gctacaggaggaggaggaggagggggaacgagaggaatcccgactttact
ctctttacccggagaaaaggcaacacgagcacgtgcaaccattgccagaa
tccgtgcggcacttgcaagagggggagaagggaaagagaaagatagtgag
ggcgctcccacgaggaggaagagGGGGAGGGGAAGGAGGGGGAGGACGAG
GGGAAGGACGAGGGGAAAGAGGGGCAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGGTGGAGGAGGAGAAAGAGGGGGAGAAGGAGGAGGAGGAGGAG
GAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAAGAAGGTGG
AAGAGGAAGAGGAATAAGAGGAAGAAGAAGACGAACAAGAAGGGGGAGGA
GAGGGAGAAGAAGAACAGGAAGAAGAGGAAGAAGAAGACGAACAATGAAG
AAGAAGGAGGAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAAAGGAGGAG
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGA
AGAAAAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGGGG
GTAGAGGAGGAGGGGGAGGAGGAGGGAGACGAGGAGGGGGTGGAAGGGGA
AGGGGAGGAGGAGGAAAAGGCGGTGGAAGCAGAGGGGGAGGAGAAGCAGG
AGGAGGAGGAGGAGAAGGGGGAGGAGGAGGAAGGGAAAGGGGAGGAGGGG
GCGGAGGCGGTGGAAGCAGAGGAGGAGGAGGAGGGGAAGGAGGAGGCGGA
GGAGGAGGAGGAGGACGAGGCAGAGGAGGACGAGGCAGAGGAGGAGGAGG
AGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGTGAAC
AGCTCGTGTCCTGGGACGGCAATGGGGCACGTAACATCCTACGGGTGTAC
AGGAGTATGGTCCGTGGAGAAGCTCGTCCCCATGATCTTCGGTTTGGTCA
ACCGCGGCAAGATATGCGGACACTCTATGTGTAGCCTTCCCTCTGACCTC
CTTTTTAGTCCTCCTCCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGTCCG
GGGACTTTGCCTGATCAAAAAATCTGTCAAAGTCGCTAGTAAAACTCGGA
CAATAATAAGGGATGAATATGCAACAAATTCTTGTGGCCCGATTGGGAGC
CAAGAATGGAAAAAACAAACAAA
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protein sequence of NO20G01660.1

>NO20G01660.1-protein ID=NO20G01660.1-protein|Name=NO20G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MASYMLSLSYRRRTVVRRSCQTPSVDTGSQVCALLWSQHNKELVSSHGFS
GNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAARPSGFGRS
WASHKTSKSNSWEKASCLLLSTPSAWLAPHLGHLVESDKGGRREGGEEGG
KEGGRAKEQGEGKEGEDEGKDEGKEGQEEEEEEEEEEGGGGERGGEGGGG
GGEGGGGGGGEGGVGRRWKRKRNKRKKKTNKKGEEREKKNRKKRKKKTNN
EEEGGEEEEEEEEEEKEEEEEEEEEEEEEEEEEEEEKEEEEEEEEEEEEE
GGRGGGGGGGRRGGGGRGRGGGGKGGGSRGGGEAGGGGGEGGGGGRERGG
GGGGGGSRGGGGGEGGGGGGGGGRGRGGRGRGGGGGHGRAIRGLYWCDTC
EQLVSWDGNGARNILRVYRSMVRGEARPHDLRFGQPRQDMRTLYV*
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Synonyms
Publications