NO20G01660.1, NO20G01660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01660.1
Unique NameNO20G01660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1527
Alignment locationchr20:504717..508139 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:504717..508139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01660.1 vs.
Match: CBJ28300.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.8 bits (312), Expect = 6.800e-25
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 0 
Query:   24 SVDTGSQVCALLWSQHNKELVSSHGFSGNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAA 93
            SVDTGSQVC+L WS+HNKELVSSHGFS NQLCLWKYP+M KIKE +GHT+R LH+D SPDG TVVSAAA
Sbjct:  497 SVDTGSQVCSLQWSRHNKELVSSHGFSENQLCLWKYPNMLKIKEFRGHTSRVLHMDTSPDGSTVVSAAA 565
The following BLAST results are available for this feature:
BLAST of NO20G01660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28300.16.800e-2581.16conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01660NO20G01660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01660.1NO20G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01660.1.cds1NO20G01660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01660.1.cds2NO20G01660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01660.1.cds3NO20G01660.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01660.1.cds4NO20G01660.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01660.1.cds5NO20G01660.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01660.1.cds6NO20G01660.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01660.1.cds7NO20G01660.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01660.1 ID=NO20G01660.1|Name=NO20G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp
ATGGCTTCCTACATGTTATCTTTATCATATAGACGTCGTACAGTGGTGCG
GAGAAGTTGTCAAACGCCCAGCGTGGACACTGGCAGTCAGGTCTGTGCCT
TGCTCTGGTCCCAGCACAACAAGGAGCTCGTCTCCTCCCACGGCTTCTCG
GGAAACCAACTCTGCCTTTGGAAGTACCCCTCCATGGCCAAGATCAAGGA
GCTCAAAGGACACACGGCGCGATTCCTCCACCTCGATCAGTCCCCGGACG
GGATGACAGTTGTCTCAGCAGCCGCGAGACCCTCCGGTTTTGGGAGATCA
TGGGCCAGCCACAAGACAAGCAAAAGCAATTCGTGGGAAAAGGCATCTTG
CCTCCTCCTCTCAACACCATCAGCATGGCTCGCTCCTCATCTGGGACATT
TGGTGGAATCAGATAAAGGGGGAAGGAGGGAGGGGGGGGAGGAGGGGGGG
AAGGAGGGGGGGAGGGCGAAAGAGCAAGGGGAGGGGAAGGAGGGGGAGGA
CGAGGGGAAGGACGAGGGGAAAGAGGGGCAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGGTGGAGGAGGAGAAAGAGGGGGAGAAGGAGGAGGAGGA
GGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAAGAAG
GTGGAAGAGGAAGAGGAATAAGAGGAAGAAGAAGACGAACAAGAAGGGGG
AGGAGAGGGAGAAGAAGAACAGGAAGAAGAGGAAGAAGAAGACGAACAAT
GAAGAAGAAGGAGGAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAAAGGA
GGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAG
AAGAAGAAAAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAA
GGGGGTAGAGGAGGAGGGGGAGGAGGAGGGAGACGAGGAGGGGGTGGAAG
GGGAAGGGGAGGAGGAGGAAAAGGCGGTGGAAGCAGAGGGGGAGGAGAAG
CAGGAGGAGGAGGAGGAGAAGGGGGAGGAGGAGGAAGGGAAAGGGGAGGA
GGGGGCGGAGGCGGTGGAAGCAGAGGAGGAGGAGGAGGGGAAGGAGGAGG
CGGAGGAGGAGGAGGAGGACGAGGCAGAGGAGGACGAGGCAGAGGAGGAG
GAGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGT
GAACAGCTCGTGTCCTGGGACGGCAATGGGGCACGTAACATCCTACGGGT
GTACAGGAGTATGGTCCGTGGAGAAGCTCGTCCCCATGATCTTCGGTTTG
GTCAACCGCGGCAAGATATGCGGACACTCTATGTGTAGCCTTCCCTCTGA
CCTCCTTTTTAGTCCTCCTCCCCCTTCTCCTCCTGGCCCTGTGTGGGCCG
TCCGGGGACTTTGCCTGATCAAAAAATCTGTCAAAGTCGCTAGTAAAACT
CGGACAATAATAAGGGATGAATATGCAACAAATTCTTGTGGCCCGATTGG
GAGCCAAGAATGGAAAAAACAAACAAA
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protein sequence of NO20G01660.1

>NO20G01660.1-protein ID=NO20G01660.1-protein|Name=NO20G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MASYMLSLSYRRRTVVRRSCQTPSVDTGSQVCALLWSQHNKELVSSHGFS
GNQLCLWKYPSMAKIKELKGHTARFLHLDQSPDGMTVVSAAARPSGFGRS
WASHKTSKSNSWEKASCLLLSTPSAWLAPHLGHLVESDKGGRREGGEEGG
KEGGRAKEQGEGKEGEDEGKDEGKEGQEEEEEEEEEEGGGGERGGEGGGG
GGEGGGGGGGEGGVGRRWKRKRNKRKKKTNKKGEEREKKNRKKRKKKTNN
EEEGGEEEEEEEEEEKEEEEEEEEEEEEEEEEEEEEKEEEEEEEEEEEEE
GGRGGGGGGGRRGGGGRGRGGGGKGGGSRGGGEAGGGGGEGGGGGRERGG
GGGGGGSRGGGGGEGGGGGGGGGRGRGGRGRGGGGGHGRAIRGLYWCDTC
EQLVSWDGNGARNILRVYRSMVRGEARPHDLRFGQPRQDMRTLYV*
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mRNA from alignment at chr20:504717..508139-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01660.1 ID=NO20G01660.1|Name=NO20G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3423bp|location=Sequence derived from alignment at chr20:504717..508139- (Nannochloropsis oceanica)
ATGGCTTCCTACATGTTATCTTTATCATATAGACGTCGTACAGTGGTGCG
GAGAAGTTGTCAAACGCCCAGGTAGCACAAGCATAGGAAAGCCTCAGTCG
CCTCCTCGCCTCGGGGGGAGGGACTCTCGATCGTACCATCAAGTTTTGGA
ACACCCACACAGGCTCCCTCCTCAACAGCGTGGACACTGGCAGTCAGGTA
GGCAAGCCCTCCCTCCCTCCCTCCCTTTCTCCCTCCCTTCCATCTTTCCT
TGCTTCCTCCTCTCTCTGGCCAGCATGATCCGCACACAAATCGGTCTGTG
AAAGTAGTCGTCTATTTATTGCCCTCAATCTAATCCTTATGTCATTATCA
CCACACAATGAATGATGAGTCTACTTCCACGCAATACCAATCTTATTACA
TTACACGCGGTACCAATCTAATAACATTACATAAAATTACACGCGGTGCC
AATCTAATCACATTACCCTTAATTTCGCGACAGGTCTGTGCCTTGCTCTG
GTCCCAGCACAACAAGGAGCTCGTCTCCTCCCACGGCTTCTCGGGAAACC
AACTCTGGTATGTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
TCTCATGTTAAACCCTTTTTAATGCCCCTACACGATGATGTTTGCTTTTT
TTGATCCTCCCTCCCTCCCTCCCTCCATCCCTCCCTCCTTCCCTCGCTCC
CTCAGCCTTTGGAAGTACCCCTCCATGGCCAAGATCAAGGAGCTCAAAGG
ACACACGGCGCGATTCCTCCACCTCGATCAGGTACAGAGCGCCCTCCTTC
CCTCCCTACCTCGCTCTCTATATCCCTCCCTCTTGTCCTCCCTGCTTCTC
CCCTTTTGTATGTCGCACAGGCACTGGCGAGTCCTCGTACCGTCAACCTC
CCCTCCCTCCCCTCCCTCCCTTCCCTCCTCGACCTACTGCAGTCCAACAC
ACTTCTGCCCATACTCACTGACTAACCCTCCTCTCTCTCCCTCCATCCCT
CAGTCCCCGGACGGGATGACAGTTGTCTCAGCAGCCGCGAGACCCTCCGG
TTTTGGGAGATCATGGGCCAGCCACAAGGTAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAAGAAAAGCCAGGAGGGTGTTGGGCTTGCCATAT
CCGCTCACTCCACTTTTTCATGTCGCTATTTATCATTCATGTATTTATCG
ATCTCTCCTTTCCACCATCTTTTCCTCAGACAAGCAAAAGCAATTCGTGG
GAAAAGGCATCTTGCCTCCTCCTCTCAACACCATCAGCATGGCTCGCTCC
TCATCTGGGACATTTGGTGGAATCAGATAAAGGGGGAAGGAGGGAGGGGG
GGGAGGAGGGGGGGAAGGAGGGGGGGAGGGCGAAAGAGCAAGTATGCAAT
TATCTCTGGAAGCGTATGTGTGTGAGAGTGTCTGTGTTACTTTGTATAGG
GTAGAAGGAAGGTTCTCTGATCTTGCTAGCAGCAGCAGCTGCTGCTGCAG
TATAAGTAGTGCTGCGACAAACATCTCTGGCAGCAGTACCATGACAGCAG
AGAGAGCTGCAGCGGTAAGAGTGAGAGAAGCAGAAATAGTCATGGGCATT
CCAAATGAAATATGGGAATCGGGAAAGGCAGGTCAAGTGTTCCCGGACTG
ATAAGTGGTACGAGAAAAACAAGGCGTGTATATGTATTGTCTCACGGGGA
AGATGGAAGTCGAGGAAGTTTAGGCAATCCTCTTGTCTTTAGATCGAGTT
GGACCACGGATGGACATGGCTTTGGATGGACCGAGATATCATATATTTTG
TATATATATGCTTGTATAATATATACCAACTATGTATATGTTTTGTTTGA
TCGACATTTAGGAGCGTGTACATGACCATCGGCATGTAGCGGCAAAGATT
GCGGATCGGTGGGGAGAGGACTATCATCAAGTAGAGATCGAACTCAATCG
TGCAGAACTACCCTCCACCTTCCTGTTTCCCTGGGCATGGGTATGGTAAG
AAGACAGGTTCATCATGATAGGGAAGGGATATGTGGGAGCCAGTGCAACA
TCAGCACCAGCATCAACACCGGCAGTTGGAGGATGGGAAGGAGGAGGGGG
AGGAAGACGAGGGAAAAGAACCCGGGCTACGGAAGCAGCAGCAGCCGCCG
GCACACAGCTGACCATACGGGTGGCAGTCGCAGAAGCACGAGCCCAGGCA
GCTACAGGAGGAGGAGGAGGAGGGGGAACGAGAGGAATCCCGACTTTACT
CTCTTTACCCGGAGAAAAGGCAACACGAGCACGTGCAACCATTGCCAGAA
TCCGTGCGGCACTTGCAAGAGGGGGAGAAGGGAAAGAGAAAGATAGTGAG
GGCGCTCCCACGAGGAGGAAGAGGGGGAGGGGAAGGAGGGGGAGGACGAG
GGGAAGGACGAGGGGAAAGAGGGGCAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGGTGGAGGAGGAGAAAGAGGGGGAGAAGGAGGAGGAGGAGGAG
GAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAAGAAGGTGG
AAGAGGAAGAGGAATAAGAGGAAGAAGAAGACGAACAAGAAGGGGGAGGA
GAGGGAGAAGAAGAACAGGAAGAAGAGGAAGAAGAAGACGAACAATGAAG
AAGAAGGAGGAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAAAGGAGGAG
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGA
AGAAAAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGGGG
GTAGAGGAGGAGGGGGAGGAGGAGGGAGACGAGGAGGGGGTGGAAGGGGA
AGGGGAGGAGGAGGAAAAGGCGGTGGAAGCAGAGGGGGAGGAGAAGCAGG
AGGAGGAGGAGGAGAAGGGGGAGGAGGAGGAAGGGAAAGGGGAGGAGGGG
GCGGAGGCGGTGGAAGCAGAGGAGGAGGAGGAGGGGAAGGAGGAGGCGGA
GGAGGAGGAGGAGGACGAGGCAGAGGAGGACGAGGCAGAGGAGGAGGAGG
AGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGTGAAC
AGCTCGTGTCCTGGGACGGCAATGGGGCACGTAACATCCTACGGGTGTAC
AGGAGTATGGTCCGTGGAGAAGCTCGTCCCCATGATCTTCGGTTTGGTCA
ACCGCGGCAAGATATGCGGACACTCTATGTGTAGCCTTCCCTCTGACCTC
CTTTTTAGTCCTCCTCCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGTCCG
GGGACTTTGCCTGATCAAAAAATCTGTCAAAGTCGCTAGTAAAACTCGGA
CAATAATAAGGGATGAATATGCAACAAATTCTTGTGGCCCGATTGGGAGC
CAAGAATGGAAAAAACAAACAAA
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Coding sequence (CDS) from alignment at chr20:504717..508139-

>NO20G01660.1 ID=NO20G01660.1|Name=NO20G01660.1|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at chr20:504717..508139- (Nannochloropsis oceanica)
ATGGCTTCCTACATGTTATCTTTATCATATAGACGTCGTACAGTGGTGCG
GAGAAGTTGTCAAACGCCCAGCGTGGACACTGGCAGTCAGGTCTGTGCCT
TGCTCTGGTCCCAGCACAACAAGGAGCTCGTCTCCTCCCACGGCTTCTCG
GGAAACCAACTCTGCCTTTGGAAGTACCCCTCCATGGCCAAGATCAAGGA
GCTCAAAGGACACACGGCGCGATTCCTCCACCTCGATCAGTCCCCGGACG
GGATGACAGTTGTCTCAGCAGCCGCGAGACCCTCCGGTTTTGGGAGATCA
TGGGCCAGCCACAAGACAAGCAAAAGCAATTCGTGGGAAAAGGCATCTTG
CCTCCTCCTCTCAACACCATCAGCATGGCTCGCTCCTCATCTGGGACATT
TGGTGGAATCAGATAAAGGGGGAAGGAGGGAGGGGGGGGAGGAGGGGGGG
AAGGAGGGGGGGAGGGCGAAAGAGCAAGGGGAGGGGAAGGAGGGGGAGGA
CGAGGGGAAGGACGAGGGGAAAGAGGGGCAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGGTGGAGGAGGAGAAAGAGGGGGAGAAGGAGGAGGAGGA
GGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGTAGGAAGAAG
GTGGAAGAGGAAGAGGAATAAGAGGAAGAAGAAGACGAACAAGAAGGGGG
AGGAGAGGGAGAAGAAGAACAGGAAGAAGAGGAAGAAGAAGACGAACAAT
GAAGAAGAAGGAGGAGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAAAGGA
GGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAG
AAGAAGAAAAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAA
GGGGGTAGAGGAGGAGGGGGAGGAGGAGGGAGACGAGGAGGGGGTGGAAG
GGGAAGGGGAGGAGGAGGAAAAGGCGGTGGAAGCAGAGGGGGAGGAGAAG
CAGGAGGAGGAGGAGGAGAAGGGGGAGGAGGAGGAAGGGAAAGGGGAGGA
GGGGGCGGAGGCGGTGGAAGCAGAGGAGGAGGAGGAGGGGAAGGAGGAGG
CGGAGGAGGAGGAGGAGGACGAGGCAGAGGAGGACGAGGCAGAGGAGGAG
GAGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGT
GAACAGCTCGTGTCCTGGGACGGCAATGGGGCACGTAACATCCTACGGGT
GTACAGGAGTATGGTCCGTGGAGAAGCTCGTCCCCATGATCTTCGGTTTG
GTCAACCGCGGCAAGATATGCGGACACTCTATGTGTAG
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Synonyms
Publications