NO20G01620, NO20G01620 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G01620 vs. NCBI_GenBank
Match: EWM22081.1 (GrpE nucleotide exchange factor [Nannochloropsis gaditana]) HSP 1 Score: 252.3 bits (643), Expect = 1.700e-63 Identity = 134/164 (81.71%), Postives = 142/164 (86.59%), Query Frame = 0 Query: 101 QTKLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKSS 265 Q KLIEKL AENKELKDKVLYTLAEMENVRTIARRD SAKQFALQSFAKQLLDVADNL RAL SVP+E L+ EGG VEGVAMTD QLQKVF AN+IV++GKPGD FDPH+HDALFEYEE GREGGSVGQVLKTGYTLNGRVIRPAQVGTVKK++ Sbjct: 41 QGKLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEALE--EGGE-------AVEGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKAA 195
BLAST of NO20G01620 vs. NCBI_GenBank
Match: XP_024584367.1 (mitochondrial protein translocase family [Plasmopara halstedii] >CEG47998.1 mitochondrial protein translocase family [Plasmopara halstedii]) HSP 1 Score: 170.2 bits (430), Expect = 8.400e-39 Identity = 89/159 (55.97%), Postives = 117/159 (73.58%), Query Frame = 0 Query: 105 IEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKS 264 +E+L A+NK++ D++L LA+ ENVR I+R D+ +A++FA+ FAK LLDV+DNL RA ESV E L E ++ + L EGVAMT+TQLQKVF I + G GD FDP++HDALFEYE+A +E G +GQ++KTGYTLN RVIRPAQVG +K S Sbjct: 57 LEQLAAQNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESVDVEAL---EPEKQLDAIKMLHEGVAMTETQLQKVFREFNINQVGAVGDKFDPNVHDALFEYEDATKEAGCIGQIMKTGYTLNDRVIRPAQVGVIKAS 212
BLAST of NO20G01620 vs. NCBI_GenBank
Match: EJK60223.1 (hypothetical protein THAOC_19478 [Thalassiosira oceanica]) HSP 1 Score: 167.5 bits (423), Expect = 5.400e-38 Identity = 84/156 (53.85%), Postives = 112/156 (71.79%), Query Frame = 0 Query: 108 LTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKS 264 L E K+LKD +L +LAE EN R IA+RD++ A+ FA+ SFAK LLD +DNL RAL++VP+E+ + EG +LA L EG++MTD L K F N + KFG PG+ FDP+LH+ALFEY + E G++GQV+K G+ LN RVIRPA+VG VK + Sbjct: 87 LETEIKDLKDNLLRSLAEAENTRRIAKRDVDQARSFAISSFAKSLLDTSDNLTRALDAVPEELRHDHEG---NPVLANLYEGISMTDDGLTKAFAKNGLKKFGAPGEKFDPNLHEALFEYPDPAGEPGNIGQVMKVGFMLNKRVIRPAEVGVVKSA 239
BLAST of NO20G01620 vs. NCBI_GenBank
Match: XP_008906652.1 (hypothetical protein PPTG_12394 [Phytophthora parasitica INRA-310] >ETI44630.1 hypothetical protein F443_10681 [Phytophthora parasitica P1569] >ETK84606.1 hypothetical protein L915_10448 [Phytophthora parasitica] >ETL38043.1 hypothetical protein L916_10341 [Phytophthora parasitica] >ETL91144.1 hypothetical protein L917_10280 [Phytophthora parasitica] >ETM44458.1 hypothetical protein L914_10311 [Phytophthora parasitica] >ETN07848.1 hypothetical protein PPTG_12394 [Phytophthora parasitica INRA-310] >ETO73262.1 hypothetical protein F444_10785 [Phytophthora parasitica P1976] >ETP14438.1 hypothetical protein F441_10631 [Phytophthora parasitica CJ01A1] >ETP42507.1 hypothetical protein F442_10594 [Phytophthora parasitica P10297]) HSP 1 Score: 166.0 bits (419), Expect = 1.600e-37 Identity = 87/159 (54.72%), Postives = 116/159 (72.96%), Query Frame = 0 Query: 103 KLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 262 K +E+LT +NK++ D++L LA+ ENVR I+R D+ +A++FA+ FAK LLDV+DNL RA ES+ L E ++ + L EGV MT+ QLQKVF KI + G+ GD FDP++HDALFEYE+A +E GS+GQ++KTGY LN RVIRPAQVG VK Sbjct: 61 KQVEELTTQNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESIDIPAL---EPEKQLDAIKMLHEGVVMTEQQLQKVFREFKIHQVGEVGDKFDPNVHDALFEYEDATKEAGSIGQLMKTGYLLNDRVIRPAQVGVVK 216
BLAST of NO20G01620 vs. NCBI_GenBank
Match: KUF77871.1 (GrpE protein [Phytophthora nicotianae] >KUF91592.1 hypothetical protein AM588_10003218 [Phytophthora nicotianae]) HSP 1 Score: 164.9 bits (416), Expect = 3.500e-37 Identity = 86/157 (54.78%), Postives = 115/157 (73.25%), Query Frame = 0 Query: 105 IEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 262 +E+LT +NK++ D++L LA+ ENVR I+R D+ +A++FA+ FAK LLDV+DNL RA ES+ L E ++ + L EGV MT+ QLQKVF KI + G+ GD FDP++HDALFEYE+A +E GS+GQ++KTGY LN RVIRPAQVG VK Sbjct: 63 VEELTTQNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESIDIPAL---EPEKQLDAIKMLHEGVVMTEQQLQKVFREFKIHQVGEVGDKFDPNVHDALFEYEDATKEAGSIGQLMKTGYLLNDRVIRPAQVGVVK 216
BLAST of NO20G01620 vs. NCBI_GenBank
Match: XP_002901643.1 (Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4] >EEY58699.1 Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4]) HSP 1 Score: 164.1 bits (414), Expect = 6.000e-37 Identity = 86/159 (54.09%), Postives = 115/159 (72.33%), Query Frame = 0 Query: 103 KLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 262 K +E+LT +NK++ D++L LA+ ENVR I+R D+ +A++FA+ FAK LLDV+DNL RA ES+ L + ++ + L EGV MT+ QLQKVF KI + G GD FDP++HDALFEYE+A +E GS+GQ++KTGY LN RVIRPAQVG VK Sbjct: 58 KQVEELTTQNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESIDVATL---QPEKQLDAIEMLHEGVVMTEQQLQKVFREFKINQVGAVGDKFDPNVHDALFEYEDATKEAGSIGQLMKTGYLLNERVIRPAQVGVVK 213
BLAST of NO20G01620 vs. NCBI_GenBank
Match: XP_009519586.1 (hypothetical protein PHYSODRAFT_311338 [Phytophthora sojae] >EGZ24298.1 hypothetical protein PHYSODRAFT_311338 [Phytophthora sojae]) HSP 1 Score: 163.3 bits (412), Expect = 1.000e-36 Identity = 86/159 (54.09%), Postives = 115/159 (72.33%), Query Frame = 0 Query: 103 KLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 262 K ++ L A+NK++ D++L LA+ ENVR I+R D+ +A++FA+ FAK LLDV+DNL RA ES+ E L + ++ + L EGV MT+TQLQKVF KI + G GD FDP++HDALFEYE+ +E GS+GQ++KTGY LN RVIRPAQVG VK Sbjct: 61 KQVKDLEAKNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESIDIEAL---QPEKQLDAIKVLHEGVVMTETQLQKVFREFKINQVGAIGDKFDPNVHDALFEYEDTTKEAGSIGQLMKTGYLLNERVIRPAQVGVVK 216
BLAST of NO20G01620 vs. NCBI_GenBank
Match: CCC55868.1 (RxLR effector candidate precursor, partial [Hyaloperonospora arabidopsidis Emoy2]) HSP 1 Score: 162.9 bits (411), Expect = 1.300e-36 Identity = 85/161 (52.80%), Postives = 117/161 (72.67%), Query Frame = 0 Query: 103 KLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKS 264 K +E+L+ +NK++ D++L LA+ ENVR I+R D+ +A++FA+ FAK LLDV+DNL RA ES+ +D E ++ + L EGV MT++QLQKVF KI + G GD FDP++HDALFEY++A +E GS+GQ++K GY LN RVIRPAQVG VK S Sbjct: 46 KEVEELSVKNKDMNDRLLRALADAENVRRISRIDVSNAREFAISKFAKALLDVSDNLKRAHESID---VDALEPEKQLDAIKVLHEGVVMTESQLQKVFREFKINQVGAVGDKFDPNVHDALFEYDDATKEAGSIGQLMKPGYLLNERVIRPAQVGVVKAS 203
BLAST of NO20G01620 vs. NCBI_GenBank
Match: OWZ24580.1 (Mitochondrial Protein Translocase [Phytophthora megakarya]) HSP 1 Score: 162.9 bits (411), Expect = 1.300e-36 Identity = 86/157 (54.78%), Postives = 113/157 (71.97%), Query Frame = 0 Query: 105 IEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 262 ++ LTA NK++ D++L LA+ ENVR I+R D+ +A++FA+ FAK LLDV+DNL RA ES+ L E ++ + L EGV MT+ QLQKVF KI + G GD FDP++HDALFEYE+A +E GS+GQ++KTGY LN RVIRPAQVG VK Sbjct: 59 VDDLTATNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLTRAHESIDVAAL---EPEKQLDAIKILHEGVVMTENQLQKVFREFKINQVGAVGDKFDPNVHDALFEYEDATKEAGSIGQLMKTGYLLNERVIRPAQVGVVK 212
BLAST of NO20G01620 vs. NCBI_GenBank
Match: XP_002182951.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC45687.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 161.8 bits (408), Expect = 3.000e-36 Identity = 82/158 (51.90%), Postives = 119/158 (75.32%), Query Frame = 0 Query: 106 EKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEI-LDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKK 263 E+L A+ ++LKD++L +LAE EN R+IA+RD+E+ K +A++SFAK LLDV+DNL RA+E+VP++ +D E +L L EG+AMT+ L K F +N +VKFG+ G+ FDP+ H+AL+EY + +E G+VGQV+K G+ LN RV+RPA+VG VKK Sbjct: 2 EQLEAQVQQLKDQLLRSLAEQENTRSIAKRDVENGKLYAIKSFAKSLLDVSDNLTRAMEAVPEDARVDQQESNH---VLHNLYEGIAMTERGLLKAFESNGLVKFGQAGEAFDPNRHEALYEYVDPDKEPGTVGQVVKDGFLLNKRVLRPAEVGIVKK 156 The following BLAST results are available for this feature:
BLAST of NO20G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G01620 ID=NO20G01620|Name=NO20G01620|organism=Nannochloropsis oceanica|type=gene|length=1417bpback to top protein sequence of NO20G01620.1 >NO20G01620.1-protein ID=NO20G01620.1-protein|Name=NO20G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bpback to top Synonyms
Publications
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