NO20G01620, NO20G01620 (gene) Nannochloropsis oceanica

Overview
NameNO20G01620
Unique NameNO20G01620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1417
Alignment locationchr20:496643..498059 -

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Properties
Property NameValue
DescriptionGrpE nucleotide exchange factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:496643..498059 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0042803protein homodimerization activity
GO:0051087chaperone binding
GO:0000774adenyl-nucleotide exchange factor activity
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR013805GrpE_coiled_coil
IPR009012GrpE_head
IPR000740GrpE
Homology
BLAST of NO20G01620 vs. NCBI_GenBank
Match: EWM22081.1 (GrpE nucleotide exchange factor [Nannochloropsis gaditana])

HSP 1 Score: 252.3 bits (643), Expect = 1.700e-63
Identity = 134/164 (81.71%), Postives = 142/164 (86.59%), Query Frame = 0
Query:  101 QTKLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKSS 265
            Q KLIEKL AENKELKDKVLYTLAEMENVRTIARRD  SAKQFALQSFAKQLLDVADNL RAL SVP+E L+  EGG         VEGVAMTD QLQKVF AN+IV++GKPGD FDPH+HDALFEYEE GREGGSVGQVLKTGYTLNGRVIRPAQVGTVKK++
Sbjct:   41 QGKLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEALE--EGGE-------AVEGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKAA 195          
BLAST of NO20G01620 vs. NCBI_GenBank
Match: XP_024584367.1 (mitochondrial protein translocase family [Plasmopara halstedii] >CEG47998.1 mitochondrial protein translocase family [Plasmopara halstedii])

HSP 1 Score: 170.2 bits (430), Expect = 8.400e-39
Identity = 89/159 (55.97%), Postives = 117/159 (73.58%), Query Frame = 0
Query:  105 IEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKS 264
            +E+L A+NK++ D++L  LA+ ENVR I+R D+ +A++FA+  FAK LLDV+DNL RA ESV  E L   E  ++   +  L EGVAMT+TQLQKVF    I + G  GD FDP++HDALFEYE+A +E G +GQ++KTGYTLN RVIRPAQVG +K S
Sbjct:   57 LEQLAAQNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESVDVEAL---EPEKQLDAIKMLHEGVAMTETQLQKVFREFNINQVGAVGDKFDPNVHDALFEYEDATKEAGCIGQIMKTGYTLNDRVIRPAQVGVIKAS 212          
BLAST of NO20G01620 vs. NCBI_GenBank
Match: EJK60223.1 (hypothetical protein THAOC_19478 [Thalassiosira oceanica])

HSP 1 Score: 167.5 bits (423), Expect = 5.400e-38
Identity = 84/156 (53.85%), Postives = 112/156 (71.79%), Query Frame = 0
Query:  108 LTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKS 264
            L  E K+LKD +L +LAE EN R IA+RD++ A+ FA+ SFAK LLD +DNL RAL++VP+E+  + EG     +LA L EG++MTD  L K F  N + KFG PG+ FDP+LH+ALFEY +   E G++GQV+K G+ LN RVIRPA+VG VK +
Sbjct:   87 LETEIKDLKDNLLRSLAEAENTRRIAKRDVDQARSFAISSFAKSLLDTSDNLTRALDAVPEELRHDHEG---NPVLANLYEGISMTDDGLTKAFAKNGLKKFGAPGEKFDPNLHEALFEYPDPAGEPGNIGQVMKVGFMLNKRVIRPAEVGVVKSA 239          
BLAST of NO20G01620 vs. NCBI_GenBank
Match: XP_008906652.1 (hypothetical protein PPTG_12394 [Phytophthora parasitica INRA-310] >ETI44630.1 hypothetical protein F443_10681 [Phytophthora parasitica P1569] >ETK84606.1 hypothetical protein L915_10448 [Phytophthora parasitica] >ETL38043.1 hypothetical protein L916_10341 [Phytophthora parasitica] >ETL91144.1 hypothetical protein L917_10280 [Phytophthora parasitica] >ETM44458.1 hypothetical protein L914_10311 [Phytophthora parasitica] >ETN07848.1 hypothetical protein PPTG_12394 [Phytophthora parasitica INRA-310] >ETO73262.1 hypothetical protein F444_10785 [Phytophthora parasitica P1976] >ETP14438.1 hypothetical protein F441_10631 [Phytophthora parasitica CJ01A1] >ETP42507.1 hypothetical protein F442_10594 [Phytophthora parasitica P10297])

HSP 1 Score: 166.0 bits (419), Expect = 1.600e-37
Identity = 87/159 (54.72%), Postives = 116/159 (72.96%), Query Frame = 0
Query:  103 KLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 262
            K +E+LT +NK++ D++L  LA+ ENVR I+R D+ +A++FA+  FAK LLDV+DNL RA ES+    L   E  ++   +  L EGV MT+ QLQKVF   KI + G+ GD FDP++HDALFEYE+A +E GS+GQ++KTGY LN RVIRPAQVG VK
Sbjct:   61 KQVEELTTQNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESIDIPAL---EPEKQLDAIKMLHEGVVMTEQQLQKVFREFKIHQVGEVGDKFDPNVHDALFEYEDATKEAGSIGQLMKTGYLLNDRVIRPAQVGVVK 216          
BLAST of NO20G01620 vs. NCBI_GenBank
Match: KUF77871.1 (GrpE protein [Phytophthora nicotianae] >KUF91592.1 hypothetical protein AM588_10003218 [Phytophthora nicotianae])

HSP 1 Score: 164.9 bits (416), Expect = 3.500e-37
Identity = 86/157 (54.78%), Postives = 115/157 (73.25%), Query Frame = 0
Query:  105 IEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 262
            +E+LT +NK++ D++L  LA+ ENVR I+R D+ +A++FA+  FAK LLDV+DNL RA ES+    L   E  ++   +  L EGV MT+ QLQKVF   KI + G+ GD FDP++HDALFEYE+A +E GS+GQ++KTGY LN RVIRPAQVG VK
Sbjct:   63 VEELTTQNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESIDIPAL---EPEKQLDAIKMLHEGVVMTEQQLQKVFREFKIHQVGEVGDKFDPNVHDALFEYEDATKEAGSIGQLMKTGYLLNDRVIRPAQVGVVK 216          
BLAST of NO20G01620 vs. NCBI_GenBank
Match: XP_002901643.1 (Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4] >EEY58699.1 Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4])

HSP 1 Score: 164.1 bits (414), Expect = 6.000e-37
Identity = 86/159 (54.09%), Postives = 115/159 (72.33%), Query Frame = 0
Query:  103 KLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 262
            K +E+LT +NK++ D++L  LA+ ENVR I+R D+ +A++FA+  FAK LLDV+DNL RA ES+    L   +  ++   +  L EGV MT+ QLQKVF   KI + G  GD FDP++HDALFEYE+A +E GS+GQ++KTGY LN RVIRPAQVG VK
Sbjct:   58 KQVEELTTQNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESIDVATL---QPEKQLDAIEMLHEGVVMTEQQLQKVFREFKINQVGAVGDKFDPNVHDALFEYEDATKEAGSIGQLMKTGYLLNERVIRPAQVGVVK 213          
BLAST of NO20G01620 vs. NCBI_GenBank
Match: XP_009519586.1 (hypothetical protein PHYSODRAFT_311338 [Phytophthora sojae] >EGZ24298.1 hypothetical protein PHYSODRAFT_311338 [Phytophthora sojae])

HSP 1 Score: 163.3 bits (412), Expect = 1.000e-36
Identity = 86/159 (54.09%), Postives = 115/159 (72.33%), Query Frame = 0
Query:  103 KLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 262
            K ++ L A+NK++ D++L  LA+ ENVR I+R D+ +A++FA+  FAK LLDV+DNL RA ES+  E L   +  ++   +  L EGV MT+TQLQKVF   KI + G  GD FDP++HDALFEYE+  +E GS+GQ++KTGY LN RVIRPAQVG VK
Sbjct:   61 KQVKDLEAKNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLKRAHESIDIEAL---QPEKQLDAIKVLHEGVVMTETQLQKVFREFKINQVGAIGDKFDPNVHDALFEYEDTTKEAGSIGQLMKTGYLLNERVIRPAQVGVVK 216          
BLAST of NO20G01620 vs. NCBI_GenBank
Match: CCC55868.1 (RxLR effector candidate precursor, partial [Hyaloperonospora arabidopsidis Emoy2])

HSP 1 Score: 162.9 bits (411), Expect = 1.300e-36
Identity = 85/161 (52.80%), Postives = 117/161 (72.67%), Query Frame = 0
Query:  103 KLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKS 264
            K +E+L+ +NK++ D++L  LA+ ENVR I+R D+ +A++FA+  FAK LLDV+DNL RA ES+    +D  E  ++   +  L EGV MT++QLQKVF   KI + G  GD FDP++HDALFEY++A +E GS+GQ++K GY LN RVIRPAQVG VK S
Sbjct:   46 KEVEELSVKNKDMNDRLLRALADAENVRRISRIDVSNAREFAISKFAKALLDVSDNLKRAHESID---VDALEPEKQLDAIKVLHEGVVMTESQLQKVFREFKINQVGAVGDKFDPNVHDALFEYDDATKEAGSIGQLMKPGYLLNERVIRPAQVGVVKAS 203          
BLAST of NO20G01620 vs. NCBI_GenBank
Match: OWZ24580.1 (Mitochondrial Protein Translocase [Phytophthora megakarya])

HSP 1 Score: 162.9 bits (411), Expect = 1.300e-36
Identity = 86/157 (54.78%), Postives = 113/157 (71.97%), Query Frame = 0
Query:  105 IEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVK 262
            ++ LTA NK++ D++L  LA+ ENVR I+R D+ +A++FA+  FAK LLDV+DNL RA ES+    L   E  ++   +  L EGV MT+ QLQKVF   KI + G  GD FDP++HDALFEYE+A +E GS+GQ++KTGY LN RVIRPAQVG VK
Sbjct:   59 VDDLTATNKDMNDRLLRALADAENVRRISRVDVNNAREFAISKFAKALLDVSDNLTRAHESIDVAAL---EPEKQLDAIKILHEGVVMTENQLQKVFREFKINQVGAVGDKFDPNVHDALFEYEDATKEAGSIGQLMKTGYLLNERVIRPAQVGVVK 212          
BLAST of NO20G01620 vs. NCBI_GenBank
Match: XP_002182951.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC45687.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 161.8 bits (408), Expect = 3.000e-36
Identity = 82/158 (51.90%), Postives = 119/158 (75.32%), Query Frame = 0
Query:  106 EKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEI-LDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKK 263
            E+L A+ ++LKD++L +LAE EN R+IA+RD+E+ K +A++SFAK LLDV+DNL RA+E+VP++  +D  E      +L  L EG+AMT+  L K F +N +VKFG+ G+ FDP+ H+AL+EY +  +E G+VGQV+K G+ LN RV+RPA+VG VKK
Sbjct:    2 EQLEAQVQQLKDQLLRSLAEQENTRSIAKRDVENGKLYAIKSFAKSLLDVSDNLTRAMEAVPEDARVDQQESNH---VLHNLYEGIAMTERGLLKAFESNGLVKFGQAGEAFDPNRHEALYEYVDPDKEPGTVGQVVKDGFLLNKRVLRPAEVGIVKK 156          
The following BLAST results are available for this feature:
BLAST of NO20G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22081.11.700e-6381.71GrpE nucleotide exchange factor [Nannochloropsis g... [more]
XP_024584367.18.400e-3955.97mitochondrial protein translocase family [Plasmopa... [more]
EJK60223.15.400e-3853.85hypothetical protein THAOC_19478 [Thalassiosira oc... [more]
XP_008906652.11.600e-3754.72hypothetical protein PPTG_12394 [Phytophthora para... [more]
KUF77871.13.500e-3754.78GrpE protein [Phytophthora nicotianae] >KUF91592.1... [more]
XP_002901643.16.000e-3754.09Mitochondrial Protein Translocase (MPT) Family [Ph... [more]
XP_009519586.11.000e-3654.09hypothetical protein PHYSODRAFT_311338 [Phytophtho... [more]
CCC55868.11.300e-3652.80RxLR effector candidate precursor, partial [Hyalop... [more]
OWZ24580.11.300e-3654.78Mitochondrial Protein Translocase [Phytophthora me... [more]
XP_002182951.13.000e-3651.90predicted protein, partial [Phaeodactylum tricornu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002696NSK002696Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01620.1NO20G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100039g3gene8361Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01620.1NO20G01620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01620 ID=NO20G01620|Name=NO20G01620|organism=Nannochloropsis oceanica|type=gene|length=1417bp
ACAGTGACCACGCCATCATCGACCATGTTGACGTCCGCCTGCAGTAGGGT
GGGACATGGGCTGAAGTCCTTTGCTCGGCCAGCgtaagtagcctcctccc
ctcttccccacccccccgtccttcccttccgtctcactcttccacgcacc
gtcctcacactccctccttcccctactcaaacgcaataagTGTCGCCACC
CAATGGTCGCAGTCTACGCCTTTGCTGTCCACGGAGATGATGGCACGGAG
CGTGTTTGGGTCTCGGACAGCGGCTTTCCCCAGAGGCATCAGCAGTGTCA
GTAGGCGCACGTTCATGAGCCAGGGCACAGGCCCAGGGGAGGGCAACgta
cgtgcatagattggagtgcttgagaagcagcaatctgattatttattgtg
atcgtcaattcctctgattctgttcgcgtttctttcctttctcaaaccat
tgcagGGCAAAGCAGCGGAGGGCGAAAAGGCAGGAGCAGAGGAGCACAAG
GCAGCAGCCGCAGTTGCAACAGAAGAGgtacagttacttatcgctcccaa
ttccttctactttgagcactatttcgcgctctgaatgctgtaaaggggca
agcctggacaaatagcactcgagtccctgaggccgctctcacccttccct
cctccctttcccttcttcgcttctctcccctccttcgcttcccttcacca
tagGAAAAAGACGAGCAAACCAAGCTCATAGAGAAACTAACCGCCGAAAA
CAAGGAACTGAAAGACAAGGTTCTCTACACCCTTGCCGAAATGGAGAACG
TCCGCACCATTGCCCGCCGTGACATGGAGAGCGCCAAACAGTTCGCCCTC
CAGTCCTTCGCTAAGCAGCTGCTAGACGTGGCCGACAACCTCGGTCGTGC
CCTCGAGAGTGTCCCTCAAGAAATTCTCGACAATAGTGAGGGAGGTCGTG
AAGGAGGGCTGTTAGCGACGTTGGTGGAGGGGGTGGCAATGACGGACACG
CAGCTTCAGAAGGTGTTCGGAGCGAATAAGATTGTGAAGTTCGGCAAGCC
GGGGGACACGTTTGATCCGCACTTGCACGATGCGCTATTCGAGTACGAAG
AGGCAGGAAGGGAGGGAGGGAGCGTAGGGCAGGTTTTGAAGACGGGTTAC
ACGCTGAATGGGCGCGTCATCCGGCCGGCGCAGGTGGGGACGGTTAAAAA
GTCGTCGTAAAGGAGTGGGGGGAGGAGAAGGGGGGAGAATAGTAGCAGAG
GGTGCATTTTTGTCGATGAAAAAGAGGGTGTGAGGAGCTGTGCTGCAATC
TGGTATGATGGTCCACGTGGTTGAAGACTTCAGAAGGGGGAGAGGTGTAA
GAGGAAGGAGTCAGTAGAAAGATAGAAAGCTAAAATGAAGGGAGAACGAC
CCACGTAAGCGAGCAGC
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protein sequence of NO20G01620.1

>NO20G01620.1-protein ID=NO20G01620.1-protein|Name=NO20G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MLTSACSRVGHGLKSFARPAVATQWSQSTPLLSTEMMARSVFGSRTAAFP
RGISSVSRRTFMSQGTGPGEGNGKAAEGEKAGAEEHKAAAAVATEEEKDE
QTKLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAK
QLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKV
FGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGR
VIRPAQVGTVKKSS*
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Synonyms
Publications