NO20G01620.1, NO20G01620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01620.1
Unique NameNO20G01620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1026
Alignment locationchr20:496643..498059 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:496643..498059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01620.1 vs.
Match: EWM22081.1 (GrpE nucleotide exchange factor [Nannochloropsis gaditana])

HSP 1 Score: 254.2 bits (648), Expect = 4.400e-64
Identity = 145/191 (75.92%), Postives = 154/191 (80.63%), Query Frame = 0 
Query:   74 KAAEGEKAGAEEHKAAAAVATEEEKDEQTKLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAKQLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKVFGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKSS 265
            KA E E A     +  AA A E   DEQ KLIEKL AENKELKDKVLYTLAEMENVRTIARRD  SAKQFALQSFAKQLLDVADNL RAL SVP+E L+  EGG         VEGVAMTD QLQKVF AN+IV++GKPGD FDPH+HDALFEYEE GREGGSVGQVLKTGYTLNGRVIRPAQVGTVKK++
Sbjct:   17 KAPEQENASGTPGEEKAAGAAE---DEQGKLIEKLMAENKELKDKVLYTLAEMENVRTIARRDAASAKQFALQSFAKQLLDVADNLNRALASVPKEALE--EGGE-------AVEGVAMTDAQLQKVFAANQIVQYGKPGDKFDPHMHDALFEYEEEGREGGSVGQVLKTGYTLNGRVIRPAQVGTVKKAA 195
The following BLAST results are available for this feature:
BLAST of NO20G01620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22081.14.400e-6475.92GrpE nucleotide exchange factor [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01620NO20G01620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01620.1NO20G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01620.1.cds1NO20G01620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01620.1.cds2NO20G01620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01620.1.cds3NO20G01620.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01620.1.cds4NO20G01620.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01620.1 ID=NO20G01620.1|Name=NO20G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
ACAGTGACCACGCCATCATCGACCATGTTGACGTCCGCCTGCAGTAGGGT
GGGACATGGGCTGAAGTCCTTTGCTCGGCCAGCTGTCGCCACCCAATGGT
CGCAGTCTACGCCTTTGCTGTCCACGGAGATGATGGCACGGAGCGTGTTT
GGGTCTCGGACAGCGGCTTTCCCCAGAGGCATCAGCAGTGTCAGTAGGCG
CACGTTCATGAGCCAGGGCACAGGCCCAGGGGAGGGCAACGGCAAAGCAG
CGGAGGGCGAAAAGGCAGGAGCAGAGGAGCACAAGGCAGCAGCCGCAGTT
GCAACAGAAGAGGAAAAAGACGAGCAAACCAAGCTCATAGAGAAACTAAC
CGCCGAAAACAAGGAACTGAAAGACAAGGTTCTCTACACCCTTGCCGAAA
TGGAGAACGTCCGCACCATTGCCCGCCGTGACATGGAGAGCGCCAAACAG
TTCGCCCTCCAGTCCTTCGCTAAGCAGCTGCTAGACGTGGCCGACAACCT
CGGTCGTGCCCTCGAGAGTGTCCCTCAAGAAATTCTCGACAATAGTGAGG
GAGGTCGTGAAGGAGGGCTGTTAGCGACGTTGGTGGAGGGGGTGGCAATG
ACGGACACGCAGCTTCAGAAGGTGTTCGGAGCGAATAAGATTGTGAAGTT
CGGCAAGCCGGGGGACACGTTTGATCCGCACTTGCACGATGCGCTATTCG
AGTACGAAGAGGCAGGAAGGGAGGGAGGGAGCGTAGGGCAGGTTTTGAAG
ACGGGTTACACGCTGAATGGGCGCGTCATCCGGCCGGCGCAGGTGGGGAC
GGTTAAAAAGTCGTCGTAAAGGAGTGGGGGGAGGAGAAGGGGGGAGAATA
GTAGCAGAGGGTGCATTTTTGTCGATGAAAAAGAGGGTGTGAGGAGCTGT
GCTGCAATCTGGTATGATGGTCCACGTGGTTGAAGACTTCAGAAGGGGGA
GAGGTGTAAGAGGAAGGAGTCAGTAGAAAGATAGAAAGCTAAAATGAAGG
GAGAACGACCCACGTAAGCGAGCAGC
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protein sequence of NO20G01620.1

>NO20G01620.1-protein ID=NO20G01620.1-protein|Name=NO20G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MLTSACSRVGHGLKSFARPAVATQWSQSTPLLSTEMMARSVFGSRTAAFP
RGISSVSRRTFMSQGTGPGEGNGKAAEGEKAGAEEHKAAAAVATEEEKDE
QTKLIEKLTAENKELKDKVLYTLAEMENVRTIARRDMESAKQFALQSFAK
QLLDVADNLGRALESVPQEILDNSEGGREGGLLATLVEGVAMTDTQLQKV
FGANKIVKFGKPGDTFDPHLHDALFEYEEAGREGGSVGQVLKTGYTLNGR
VIRPAQVGTVKKSS*
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mRNA from alignment at chr20:496643..498059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01620.1 ID=NO20G01620.1|Name=NO20G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1417bp|location=Sequence derived from alignment at chr20:496643..498059- (Nannochloropsis oceanica)
ACAGTGACCACGCCATCATCGACCATGTTGACGTCCGCCTGCAGTAGGGT
GGGACATGGGCTGAAGTCCTTTGCTCGGCCAGCGTAAGTAGCCTCCTCCC
CTCTTCCCCACCCCCCCGTCCTTCCCTTCCGTCTCACTCTTCCACGCACC
GTCCTCACACTCCCTCCTTCCCCTACTCAAACGCAATAAGTGTCGCCACC
CAATGGTCGCAGTCTACGCCTTTGCTGTCCACGGAGATGATGGCACGGAG
CGTGTTTGGGTCTCGGACAGCGGCTTTCCCCAGAGGCATCAGCAGTGTCA
GTAGGCGCACGTTCATGAGCCAGGGCACAGGCCCAGGGGAGGGCAACGTA
CGTGCATAGATTGGAGTGCTTGAGAAGCAGCAATCTGATTATTTATTGTG
ATCGTCAATTCCTCTGATTCTGTTCGCGTTTCTTTCCTTTCTCAAACCAT
TGCAGGGCAAAGCAGCGGAGGGCGAAAAGGCAGGAGCAGAGGAGCACAAG
GCAGCAGCCGCAGTTGCAACAGAAGAGGTACAGTTACTTATCGCTCCCAA
TTCCTTCTACTTTGAGCACTATTTCGCGCTCTGAATGCTGTAAAGGGGCA
AGCCTGGACAAATAGCACTCGAGTCCCTGAGGCCGCTCTCACCCTTCCCT
CCTCCCTTTCCCTTCTTCGCTTCTCTCCCCTCCTTCGCTTCCCTTCACCA
TAGGAAAAAGACGAGCAAACCAAGCTCATAGAGAAACTAACCGCCGAAAA
CAAGGAACTGAAAGACAAGGTTCTCTACACCCTTGCCGAAATGGAGAACG
TCCGCACCATTGCCCGCCGTGACATGGAGAGCGCCAAACAGTTCGCCCTC
CAGTCCTTCGCTAAGCAGCTGCTAGACGTGGCCGACAACCTCGGTCGTGC
CCTCGAGAGTGTCCCTCAAGAAATTCTCGACAATAGTGAGGGAGGTCGTG
AAGGAGGGCTGTTAGCGACGTTGGTGGAGGGGGTGGCAATGACGGACACG
CAGCTTCAGAAGGTGTTCGGAGCGAATAAGATTGTGAAGTTCGGCAAGCC
GGGGGACACGTTTGATCCGCACTTGCACGATGCGCTATTCGAGTACGAAG
AGGCAGGAAGGGAGGGAGGGAGCGTAGGGCAGGTTTTGAAGACGGGTTAC
ACGCTGAATGGGCGCGTCATCCGGCCGGCGCAGGTGGGGACGGTTAAAAA
GTCGTCGTAAAGGAGTGGGGGGAGGAGAAGGGGGGAGAATAGTAGCAGAG
GGTGCATTTTTGTCGATGAAAAAGAGGGTGTGAGGAGCTGTGCTGCAATC
TGGTATGATGGTCCACGTGGTTGAAGACTTCAGAAGGGGGAGAGGTGTAA
GAGGAAGGAGTCAGTAGAAAGATAGAAAGCTAAAATGAAGGGAGAACGAC
CCACGTAAGCGAGCAGC
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Coding sequence (CDS) from alignment at chr20:496643..498059-

>NO20G01620.1 ID=NO20G01620.1|Name=NO20G01620.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr20:496643..498059- (Nannochloropsis oceanica)
ATGTTGACGTCCGCCTGCAGTAGGGTGGGACATGGGCTGAAGTCCTTTGC
TCGGCCAGCTGTCGCCACCCAATGGTCGCAGTCTACGCCTTTGCTGTCCA
CGGAGATGATGGCACGGAGCGTGTTTGGGTCTCGGACAGCGGCTTTCCCC
AGAGGCATCAGCAGTGTCAGTAGGCGCACGTTCATGAGCCAGGGCACAGG
CCCAGGGGAGGGCAACGGCAAAGCAGCGGAGGGCGAAAAGGCAGGAGCAG
AGGAGCACAAGGCAGCAGCCGCAGTTGCAACAGAAGAGGAAAAAGACGAG
CAAACCAAGCTCATAGAGAAACTAACCGCCGAAAACAAGGAACTGAAAGA
CAAGGTTCTCTACACCCTTGCCGAAATGGAGAACGTCCGCACCATTGCCC
GCCGTGACATGGAGAGCGCCAAACAGTTCGCCCTCCAGTCCTTCGCTAAG
CAGCTGCTAGACGTGGCCGACAACCTCGGTCGTGCCCTCGAGAGTGTCCC
TCAAGAAATTCTCGACAATAGTGAGGGAGGTCGTGAAGGAGGGCTGTTAG
CGACGTTGGTGGAGGGGGTGGCAATGACGGACACGCAGCTTCAGAAGGTG
TTCGGAGCGAATAAGATTGTGAAGTTCGGCAAGCCGGGGGACACGTTTGA
TCCGCACTTGCACGATGCGCTATTCGAGTACGAAGAGGCAGGAAGGGAGG
GAGGGAGCGTAGGGCAGGTTTTGAAGACGGGTTACACGCTGAATGGGCGC
GTCATCCGGCCGGCGCAGGTGGGGACGGTTAAAAAGTCGTCGTAA
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Synonyms
Publications