NO20G01610, NO20G01610 (gene) Nannochloropsis oceanica

Overview
NameNO20G01610
Unique NameNO20G01610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3714
Alignment locationchr20:492929..496642 +

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Properties
Property NameValue
DescriptionSerine hydroxymethyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:492929..496642 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
Homology
BLAST of NO20G01610 vs. NCBI_GenBank
Match: XP_005852729.1 (glycine hydroxymethyltransferase [Nannochloropsis gaditana CCMP526] >EKU23102.1 glycine hydroxymethyltransferase [Nannochloropsis gaditana CCMP526] >EWM22099.1 serine hydroxymethyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 886.7 bits (2290), Expect = 3.200e-254
Identity = 442/490 (90.20%), Postives = 465/490 (94.90%), Query Frame = 0
Query:    1 MLLRHGSKKLSVMPRLTSMIRSITSETKSWATALNEPLVKTDPDLYAIIEQEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNENIDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLADTLLKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKKETGPKIKDFKEALKDGPGKYGEVTKLKEDVVAFAKKFPTVGF 491
            M LR GS  L++  R+  ++RSITSETKSWAT+LNEPL  TDPDL+AIIEQEK+RQ+ESLVLIASENFTSKSVFDALGSVMSNKYSEGYP ARYYGGNENIDKVESLCQ+RAL AF LDP  WGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDE TGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAG IPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVR+VTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQ A+PEFKKYQEQVL+NS RLA+TL KAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGD+SALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDR+VKIAQ IK+ETGPKIKDFKEAL++GPGK+  +  LK+DVVAFA+KFPTVGF
Sbjct:    5 MFLRRGSNTLALGRRM-PILRSITSETKSWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKRETGPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF 493          
BLAST of NO20G01610 vs. NCBI_GenBank
Match: CBN75444.1 (serine hydroxymethyltransferase 2 [Ectocarpus siliculosus])

HSP 1 Score: 724.2 bits (1868), Expect = 2.800e-205
Identity = 353/471 (74.95%), Postives = 406/471 (86.20%), Query Frame = 0
Query:   21 RSITSETKSWATALNEPLVKTDPDLYAIIEQEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNENIDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLADTLLKAGYSLVSGGTDNHLVLVDL-KPQQVDGARVERVMELANMAANKNTVPGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKKETGPKIKDFKEALKDGPGKYGEVTKLKEDVVAFAKKFPTVGF 491
            R ITSET+SWA A+N+PL +TDPDL+ I+E EK+RQ++SLVLIASENFTSKSV+DALGS+MSNKYSEGYP ARYYGGNE IDKVESLCQKRAL+AF LDP+ WGVNVQTLSGSPANFQAYTAVL PHDRIM+LDLPHGGHLSHGYQTD+KKIS VS F+ETFPYRLDESTG+IDYD M  NA LFRPKL+VAGASAY+R IDY RM+++AD   A+LLSDMAHISGLV+AGV+PSPFP+SDIVTTTTHKSLRGPRGAMIFYRKG R  TKKG  I YD+E KINF+VFPGLQGGPHNHTIAALATALKQ   PE+  YQ+QV+KNSA +A+ L+  GY LVSGGTDNHLVLVDL K   +DGARVE ++E+ NMA NKNTVPGD+SALTPGGIR+G PALTSRGFTEEDFEQV  FF R V +A+ +  +TG KIK ++EAL DG  KY E+ +L++D+  FA+ FP +GF
Sbjct:   12 RGITSETRSWALAMNKPLEETDPDLFDIMEHEKVRQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPELWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFYETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLLSDMAHISGLVSAGVVPSPFPYSDIVTTTTHKSLRGPRGAMIFYRKGQRGTTKKGEPIMYDIESKINFSVFPGLQGGPHNHTIAALATALKQAKAPEYVAYQKQVVKNSAAMAEKLIADGYQLVSGGTDNHLVLVDLKKSSNIDGARVELMLEVVNMATNKNTVPGDKSALTPGGIRMGAPALTSRGFTEEDFEQVAAFFHRGVTLAKKVAADTG-KIKAYREALADGGSKYPEIKQLRDDINNFARTFPVIGF 481          
BLAST of NO20G01610 vs. NCBI_GenBank
Match: XP_024393527.1 (serine hydroxymethyltransferase 1, mitochondrial-like [Physcomitrella patens] >PNR40866.1 hypothetical protein PHYPA_018269 [Physcomitrella patens])

HSP 1 Score: 677.9 bits (1748), Expect = 2.300e-191
Identity = 338/477 (70.86%), Postives = 386/477 (80.92%), Query Frame = 0
Query:   17 TSMIRSITSETKS---WATALNEPLVKTDPDLYAIIEQEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNENIDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLADTLLKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKKETGPKIKDFKEALKDGPGKYGEVTKLKEDVVAFAKKFPTVGF 491
            T++    +S  KS   W   LN  + + DP++  IIE EK RQ + L LI SENFTS SV  A+GSVM+NKYSEGYP ARYYGGNE ID  E LCQKRAL AF LDP++WGVNVQ+LSGSPANFQ YTA+L PH+RIMALDLPHGGHLSHGYQTD KKISAVSIFFET PYRLDESTG IDYD ME++A L+RPKL+VAGASAYAR  DY RMRK+ DK  A LL+DMAHISGLVAAGV+PSPF  +D+VTTTTHKSLRGPRGAMIFYRKG+++  KKG +I YD E+KIN AVFPGLQGGPHNHTIA LA ALKQ ATPEFK YQEQVL NSAR A  L+  GY LVSGGT+NHLVLV+LKP+ VDG+RVERVMELA++AANKNTVPGD SAL PGGIR+G PALTSRGF EEDFE+V  FFDR+V IA  +KK TG K+KDF+ A+   P    E+ KL+ +V  FAK+FPT+GF
Sbjct:   39 TAVASEYSSSAKSNVTWPKQLNADISEVDPEITDIIEHEKNRQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAERLCQKRALAAFRLDPEKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDMKKISAVSIFFETMPYRLDESTGYIDYDTMEKSAVLYRPKLIVAGASAYARHYDYARMRKVCDKQKAILLADMAHISGLVAAGVVPSPFDFADVVTTTTHKSLRGPRGAMIFYRKGLKETNKKGEQIFYDYEDKINAAVFPGLQGGPHNHTIAGLAVALKQAATPEFKAYQEQVLSNSARFAKALMSQGYELVSGGTENHLVLVNLKPKGVDGSRVERVMELAHIAANKNTVPGDVSALVPGGIRMGTPALTSRGFIEEDFEKVAEFFDRAVGIAVKVKKSTGAKLKDFRAAVDTDPEIQAEIGKLRTEVEEFAKQFPTIGF 515          
BLAST of NO20G01610 vs. NCBI_GenBank
Match: XP_024390705.1 (serine hydroxymethyltransferase 1, mitochondrial-like [Physcomitrella patens] >PNR62848.1 hypothetical protein PHYPA_001272 [Physcomitrella patens])

HSP 1 Score: 677.9 bits (1748), Expect = 2.300e-191
Identity = 329/462 (71.21%), Postives = 383/462 (82.90%), Query Frame = 0
Query:   29 SWATALNEPLVKTDPDLYAIIEQEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNENIDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLADTLLKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKKETGPKIKDFKEALKDGPGKYGEVTKLKEDVVAFAKKFPTVGF 491
            +W   LN  + + DP++  IIE EK RQ + L LI SENFTS SV  A+GSVM+NKYSEGYP ARYYGGNE ID  E LCQKRAL AF LDP++WGVNVQ+LSGSPANFQ YTA+L PH+RIMALDLPHGGHLSHGYQTD+KKISAVSIFFET PYRL+ESTG IDYD+ME++A LFRPKL+VAGASAYAR  DY RMR++ DK  A LL+DMAHISGLVA GV+PSPF ++D+VTTTTHKSLRGPRGAMIFYRKG+++ TKKG ++ YD E+KIN +VFPGLQGGPHNHTI  LA ALKQ ATPEFK YQEQVL+NSA  A  L+  GY LVSGGT+NHLVLV+LKP+ VDG+RVERVMELA++AANKNTVPGD SAL PGGIR+G PALTSRGFTEEDFE+V  +FDR+V+IA  +KK TG K+KDF+  +   P    E+ KLK +V  FAK+FPT+GF
Sbjct:   53 TWPKQLNADISEVDPEIVDIIEHEKNRQYKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAERLCQKRALAAFRLDPEKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQMEKSATLFRPKLIVAGASAYARHYDYARMRQVCDKQKAILLADMAHISGLVAGGVVPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGLKETTKKGEQVFYDYEDKINASVFPGLQGGPHNHTITGLAVALKQAATPEFKAYQEQVLRNSAHFAKALMGRGYELVSGGTENHLVLVNLKPKGVDGSRVERVMELAHIAANKNTVPGDVSALVPGGIRMGTPALTSRGFTEEDFEKVAEYFDRAVEIAVKVKKSTGTKLKDFRNVVDTDPEVQAEIGKLKHEVEEFAKQFPTIGF 514          
BLAST of NO20G01610 vs. NCBI_GenBank
Match: PRW61055.1 (serine hydroxymethyltransferase [Chlorella sorokiniana])

HSP 1 Score: 673.3 bits (1736), Expect = 5.600e-190
Identity = 331/463 (71.49%), Postives = 383/463 (82.72%), Query Frame = 0
Query:   29 SWATALNEPLVKTDPDLYAIIEQEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNENIDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLADTLLKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKKETGPKIKDFKEAL-KDGPGKYGEVTKLKEDVVAFAKKFPTVGF 491
            +W   LN  L + DP+LY IIE EK RQ + L LI SENF S SV +A+GSVM+NKYSEGYP ARYYGGNE ID+ E LCQKRAL+AF LDP++WGVNVQ+LSGSPANFQ YTA+L PHDRIMALDLPHGGHLSHGYQTD+KKISA SIFFET PYRLDESTG IDYD ME+ A LFRPKL+VAGASAY R  DY RMR +ADKHNA LL+DMAHISGLVAAG++PSPF ++D+VTTTTHKSLRGPRGAMIFYRKG + V KKG  I YDLE  INF+VFPGLQGGPHNHTI+ LA AL+Q ATPEFK YQEQVL+NS  LA  L   G+SLVSGGTDNH+VL DL+P+ VDG+RVERV+ELA++AANKNTVPGD SA+ PGG+R+G PALTSRGF E+DF+QV  F +R V+IA  +KK TGPK+KDF+EAL K+ P     ++ L+ DV  FAK+FPT+GF
Sbjct:  998 TWPKVLNAGLSEVDPELYDIIEHEKNRQYKGLELIPSENFVSASVMEAVGSVMTNKYSEGYPGARYYGGNEFIDQAERLCQKRALEAFRLDPEQWGVNVQSLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISATSIFFETMPYRLDESTGLIDYDMMEKTATLFRPKLIVAGASAYTRHYDYPRMRAVADKHNAVLLADMAHISGLVAAGIVPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGQKGVDKKGNPIKYDLEGPINFSVFPGLQGGPHNHTISGLACALRQAATPEFKAYQEQVLRNSQALAKGLQDRGFSLVSGGTDNHIVLTDLRPKGVDGSRVERVLELAHIAANKNTVPGDVSAMVPGGLRMGSPALTSRGFVEDDFKQVAEFVNRGVEIAAELKKATGPKLKDFREALDKEEP---AALSSLRADVEDFAKQFPTIGF 1457          
BLAST of NO20G01610 vs. NCBI_GenBank
Match: XP_005643716.1 (SHMT-domain-containing protein [Coccomyxa subellipsoidea C-169] >EIE19172.1 SHMT-domain-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 670.6 bits (1729), Expect = 3.600e-189
Identity = 331/464 (71.34%), Postives = 383/464 (82.54%), Query Frame = 0
Query:   29 SWATALNEPLVKTDPDLYAIIEQEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNENIDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLADTLLKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKKE--TGPKIKDFKEALKDGPGKYGEVTKLKEDVVAFAKKFPTVGF 491
            +W   LN PL + DP+L  IIE EK RQ + L LI SENF S SV +A+GSVM+NKYSEGYP ARYYGGNE ID+ E LCQ+RAL AF LDP++WGVNVQ+LSGSPANFQ YTA+L PHDRIM LDLPHGGHLSHGYQTD+K+ISAVSIFFET  YRLDE TG IDYD++EENAALFRPKL+VAGASAYAR  DY RMR IADKH A+LL+DMAHISGLVAAGV+PSPF ++D+VTTTTHKSLRGPRGAMIF+RKGVR V KKG EI YD+E+KINF+VFPGLQGGPHNHTI+ LA ALKQ A PEFK YQEQVLKNS  LAD L K G+ LVSGGT+NHLVL DL+P+ VDG+RVERV+ELA++AANKNTVPGD+SAL PGG+R+G PALTSRGFTE DF++V  F DR+V+I   +K +   GPK+KDFK  +     +  E+ +LK  V  FAK FPT+GF
Sbjct:   34 TWPKLLNAPLSEVDPELEDIIEHEKNRQWKGLELIPSENFVSSSVMEAVGSVMTNKYSEGYPGARYYGGNEFIDQAERLCQERALKAFRLDPEKWGVNVQSLSGSPANFQVYTALLNPHDRIMGLDLPHGGHLSHGYQTDTKRISAVSIFFETMAYRLDEETGIIDYDRLEENAALFRPKLIVAGASAYARHYDYPRMRAIADKHKAFLLADMAHISGLVAAGVVPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVRSVDKKGKEIMYDMEDKINFSVFPGLQGGPHNHTISGLACALKQAAGPEFKAYQEQVLKNSKALADGLQKRGFKLVSGGTENHLVLADLRPKGVDGSRVERVLELAHIAANKNTVPGDKSALVPGGLRMGAPALTSRGFTEADFDKVAEFVDRAVQITVDLKNKEGAGPKLKDFKAYVDS--NEVPEIKELKSAVEEFAKDFPTIGF 495          
BLAST of NO20G01610 vs. NCBI_GenBank
Match: XP_002177340.1 (serine hydroxymethyltransferase [Phaeodactylum tricornutum CCAP 1055/1] >EEC51803.1 serine hydroxymethyltransferase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 667.9 bits (1722), Expect = 2.400e-188
Identity = 339/483 (70.19%), Postives = 393/483 (81.37%), Query Frame = 0
Query:   10 LSVMPRLTSMIRSITSETKSWATALNEPLVKTDPDLYAIIEQEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNENIDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLADTLLKAGYSLVSGGTDNHLVLVDLKPQ-QVDGARVERVMELANMAANKNTVPGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKK-ETGPKIKDFKEALKDGPGKYGEVTKLKEDVVAFAKKFPTVGF 491
            LSV   L   IR I + T +    LN+ L++TDP+L  +IEQEK RQ+ SLVLIASENFTSK+V DALGSV+SNKYSEGYP ARYYGGNENID+VE LCQKRAL+AF LDP EWGVNVQ+LSGSPANFQ YTA+L  H RI+ALDLPHGGHLSHGYQT +KKIS VS +FE+ PYRLDESTG IDYD+ME++A LFRPK++VAGASAY+R IDYER+RKIAD   AY++SDMAHISGLVAA VIPS F +SD+VTTTTHKSLRGPRGAMIFYRKG +   KKG  I YDLEEKINF VFPGLQGGPHNHTI ALAT LKQ AT +F  YQ+QVLKNS+RLA+ L K GY+LVSGGTDNHLVL+D+K   ++DGARVER++ELA +A NKNTVPGD SAL PGGIR+G PALTSRGF E+DF +V HFFDR+VKIA  +K  + G K+K F+E    GP    ++ +L+ DV  FA  FPTVGF
Sbjct:    2 LSVRSTLAPAIRRIATRTFAAGADLNKTLLETDPELSQLIEQEKARQRNSLVLIASENFTSKAVLDALGSVLSNKYSEGYPGARYYGGNENIDQVELLCQKRALEAFHLDPAEWGVNVQSLSGSPANFQVYTALLETHARILALDLPHGGHLSHGYQTATKKISMVSRYFESMPYRLDESTGTIDYDQMEKSADLFRPKMIVAGASAYSRLIDYERIRKIADGVGAYVMSDMAHISGLVAAQVIPSCFEYSDVVTTTTHKSLRGPRGAMIFYRKGQKGTDKKGNPIMYDLEEKINFTVFPGLQGGPHNHTIGALATCLKQAATADFVVYQKQVLKNSSRLAEELNKLGYTLVSGGTDNHLVLIDVKSSAKIDGARVERILELACIATNKNTVPGDTSALMPGGIRMGTPALTSRGFKEDDFTKVAHFFDRAVKIAVKLKNTDQGAKLKGFREMCAVGPSVDADLVQLRHDVSEFACLFPTVGF 484          
BLAST of NO20G01610 vs. NCBI_GenBank
Match: PSC74475.1 (serine hydroxymethyltransferase [Micractinium conductrix])

HSP 1 Score: 667.9 bits (1722), Expect = 2.400e-188
Identity = 330/463 (71.27%), Postives = 379/463 (81.86%), Query Frame = 0
Query:   29 SWATALNEPLVKTDPDLYAIIEQEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNENIDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLADTLLKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKKETGPKIKDFKEAL-KDGPGKYGEVTKLKEDVVAFAKKFPTVGF 491
            +W   LN PLV+ DP+L  IIE EK RQ + L LI SENF S SV +A+GSVM+NKYSEGYP ARYYGGNE ID+ E LCQ+RAL AF LDP++WGVNVQ+LSGSPANFQ YTA+L PHDRIMALDLPHGGHLSHGYQTD+KKISA SIFFET PYRLDESTG IDYD ME+ A LFRPKL+VAGASAY R  DY RMR +ADKHNA LL+DMAHISGLVAAG++PSPF ++D+VTTTTHKSLRGPRGAMIFYRKG +   KKG  + Y LE  INF+VFPGLQGGPHNHTI+ LA AL Q ATPEFK YQEQVLKNS  LA  L K G+SLVSGGTDNH+VL DL+P+ VDG+RVERV+ELA++AANKNTVPGD SA+ PGG+R+G PALTSRGF E DFEQV  F DRSVKIA  +KK +G K+KDF+E L K+ P     +  L+++V  FAK+FPT+GF
Sbjct:   49 TWPRVLNAPLVEVDPELMDIIEHEKNRQYKGLELIPSENFVSASVMEAVGSVMTNKYSEGYPGARYYGGNEFIDQAERLCQRRALAAFRLDPEQWGVNVQSLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISATSIFFETMPYRLDESTGLIDYDMMEKTATLFRPKLIVAGASAYTRHYDYPRMRVVADKHNAVLLADMAHISGLVAAGIVPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGQKGTDKKGNPVMYHLEGPINFSVFPGLQGGPHNHTISGLACALNQAATPEFKSYQEQVLKNSQALAQGLQKRGFSLVSGGTDNHIVLTDLRPKGVDGSRVERVLELAHIAANKNTVPGDVSAMVPGGLRMGSPALTSRGFVERDFEQVAEFVDRSVKIAADLKKASGLKLKDFRELLEKEEP---AALATLRKEVEDFAKQFPTIGF 508          
BLAST of NO20G01610 vs. NCBI_GenBank
Match: XP_009405786.1 (PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 667.5 bits (1721), Expect = 3.100e-188
Identity = 327/464 (70.47%), Postives = 383/464 (82.54%), Query Frame = 0
Query:   29 SWATALNEPLVKTDPDLYAIIEQEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNENIDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLADTLLKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKKET--GPKIKDFKEALKDGPGKYGEVTKLKEDVVAFAKKFPTVGF 491
            +W   LN PL   DP++  IIE EK RQ + L LI SENFTS SV  A+GSVM NKYSEGYP ARYYGGNE ID  ESLCQKRAL+AFGLDP +WGVNVQ+LSGSP+NFQ YTA+L PH+RIMALDLPHGGHLSHGYQTD+KKISAVSIFFET PYRLDESTG IDYD++E++A LFRPKL+VAGASAYAR  DYER+RK+ DK  A LL+DMAHISGLVAAGVIPSPF ++DIVTTTTHKSLRGPRGAMIF+RKG++++ KKG E+ YD E+KIN AVFPGLQGGPHNHTI+ LA ALKQ  TPEFK YQEQVLKN A+ A+ L++ GY LVSGGTDNHLVLV+LK + +DG+RVE+V+ELA++AANKNTVPGD SA+ PGGIR+G PALTSRGF EEDF +V  FFD +VK+A  IK ET  G K+KDF   ++       E++KL  +V  +AK+FPT+GF
Sbjct:   48 TWTKQLNAPLEVVDPEIAEIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMINKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFGLDPSKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCDKQKAILLADMAHISGLVAAGVIPSPFKYADIVTTTTHKSLRGPRGAMIFFRKGLKEINKKGQEVMYDFEDKINAAVFPGLQGGPHNHTISGLAVALKQATTPEFKAYQEQVLKNCAKFAECLVEKGYELVSGGTDNHLVLVNLKNKGIDGSRVEKVLELAHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVADFFDIAVKLALKIKAETKGGSKLKDFVATIQTDANIQYEISKLCHEVEDYAKQFPTIGF 511          
BLAST of NO20G01610 vs. NCBI_GenBank
Match: XP_022768510.1 (serine hydroxymethyltransferase 2, mitochondrial-like [Durio zibethinus])

HSP 1 Score: 666.0 bits (1717), Expect = 9.000e-188
Identity = 325/463 (70.19%), Postives = 382/463 (82.51%), Query Frame = 0
Query:   29 SWATALNEPLVKTDPDLYAIIEQEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNENIDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLADTLLKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKKET-GPKIKDFKEALKDGPGKYGEVTKLKEDVVAFAKKFPTVGF 491
            +W   LN PL + DP++  IIE EK RQ + L LI SENFTS SV  A+GSVM+NKYSEGYP ARYYGGNE ID  ESLCQKRAL+AFGLDP EWGVNVQ+LSGSPANFQ YTA+L PH+RIMALDLPHGGHLSHGYQTD+KKISAVSIFFET PYRLDESTG IDYD++E++A LFRPKL+VAGASAYAR  DY  +RK+ DK  A LL+DMAHISGLVAAGVIPSPF ++D+VTTTTHKSLRGPRGAMIF+RKGV+++ K+G E+ YDLE+KIN AVFPGLQGGPHNHTIA LA ALKQV TPE+K YQEQVL N +  A  LL+ GY LVSGGT+NHLVLV+L+ + +DG+RVE+V+E  ++AANKNTVPGD SA+ PGGIR+G PALTSRGF EEDFE+V  FFD +VK+A  IK ET G K+KDF   L+       E+ KL+++V  +AK+FPT+GF
Sbjct:   45 NWVHRLNAPLEEIDPEIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFGLDPAEWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSAVLFRPKLIVAGASAYARLYDYAHIRKVCDKQKAILLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVMYDLEDKINQAVFPGLQGGPHNHTIAGLAVALKQVRTPEYKAYQEQVLSNCSIFAQRLLEKGYELVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDLSAMVPGGIRMGTPALTSRGFVEEDFEKVADFFDAAVKLALKIKAETNGTKLKDFVATLQSDANIQSEIAKLRQEVEEYAKQFPTIGF 507          
The following BLAST results are available for this feature:
BLAST of NO20G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852729.13.200e-25490.20glycine hydroxymethyltransferase [Nannochloropsis ... [more]
CBN75444.12.800e-20574.95serine hydroxymethyltransferase 2 [Ectocarpus sili... [more]
XP_024393527.12.300e-19170.86serine hydroxymethyltransferase 1, mitochondrial-l... [more]
XP_024390705.12.300e-19171.21serine hydroxymethyltransferase 1, mitochondrial-l... [more]
PRW61055.15.600e-19071.49serine hydroxymethyltransferase [Chlorella sorokin... [more]
XP_005643716.13.600e-18971.34SHMT-domain-containing protein [Coccomyxa subellip... [more]
XP_002177340.12.400e-18870.19serine hydroxymethyltransferase [Phaeodactylum tri... [more]
PSC74475.12.400e-18871.27serine hydroxymethyltransferase [Micractinium cond... [more]
XP_009405786.13.100e-18870.47PREDICTED: serine hydroxymethyltransferase, mitoch... [more]
XP_022768510.19.000e-18870.19serine hydroxymethyltransferase 2, mitochondrial-l... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01610.1NO20G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594806gene_6378Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01610.1NO20G01610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01610 ID=NO20G01610|Name=NO20G01610|organism=Nannochloropsis oceanica|type=gene|length=3714bp
ATGCTGCCTTTGACAGCGGTCTGTGCATGGGAAGAAAGAGAGTAGTTGAG
TGGTGAGTGGGTGGGTGAGAAGCGCGGCACTGTGTTGGTTGCTGGAATGT
ACTTTTGTAGAGAAGTACACGTGCATGTACTCTAAAGCTTATTTGTGTTG
CTCATCTATATTTTTCGCTTTCTTTCGTCAAATCGTGCATGATAGGTGGA
GGAGGACTGTCCTGGACGGACAAGGGAAGGAGGTTTCGTGCACCATCTTT
TTGTGTATTTGTGTATGACGACGCTTGACAGTGATCACCAGCCCATCAAT
TATTAACTCGTGCAATACGTCCACGCTCTGCCAAACTCGAGACTTTTATT
CGTGCACAGCCACATGACAGGGCGGGCGGATAAAAACATTTTTTTGAAAC
AAGTCACATTCATAAAAGGTTGCTTAAGGAGCGATGAGAGGCAGAAGCAG
GATCTGCACAAGAACCAACCTAGTTGCACACCTGCTGGATGCGTATCCAT
GTCCTCGTGCTAGTTCGTATGCATTGCTATATTTGAGACACACCTGACTG
AGATGCTAAACCCTGACTGAGATGGTAAAATTTAGCCTCCCCACCCTGCA
CTGCACCCCCAGCAACGTACAGGCGCCCCTTCAGAGAGCAAAGTAAACGT
GCCCCTGCCGCCCTTTTACGACAACCTCGCCATAATCATGCTCCTTCGCC
ATGGCAGCAAGAAACTGTCTGTCATGCCTCGGCTTACGTCTATGATCAGg
taagtctcagtggagaagtcagagtgtatcatgggggttgctgctgctgc
ggtggaagtacaagcgggaattcggtgcgttagagactgtgtatgtctga
caatcgtctgcgttattgcgaccactgcttccagcatttatgtgtgagat
caccagtaatgtgtgtggtggaatctggcgggcgcatccacggcctcaaa
cgccacacaagcaagagccacacaagagcaggatcagaagataaacgtca
accctctacactccccctcttttccccccctttcccgtccccattcctat
cctactcttgtagAAGTATCACTTCGGAGACAAAATCATGGGCGACGGCG
TTGAACGAGCCGCTGGTGAAGACCGACCCTGACTTATATGCCATCATTGA
GCAAGAGAAGATCCGGCAGCAGGAGTCCTTAGTGCTGATTGCCTCAGAGA
ATTTCACGTCCAAgtaagtggtcgtccagaaaaggcttgaaataagaaaa
ctgaagacatcttgatgaaaaaagagagtaaagtgtgtctccgtgaccaa
ctcatgtctttgaccatctcatgtcttacatcattcctcctccctccatc
ttttccgcctttagGTCAGTGTTCGACGCCCTCGGCTCTGTCATGTCCAA
CAAGTACTCGGAGGGCTACCCGGCCGCACGCTACTATGGTGGCAATGAGA
ATATTGACAAGgcaagacaaatattataggggatacaaagaaatagcgcg
attctcatccctcccttttttcgtcccttctctcccttctcccccgctag
gcaccccgacctcagtgatcaagacctgcatgtctgacctcacccctccc
tatgtcactccttccttcaatagGTAGAATCTCTCTGTCAGAAACGCGCT
TTAGACGCCTTTGGCCTGGACCCCAAAGAGTGGGGCGTGAACGTGCAAAC
CCTCTCGGGCTCGCCGGCCAACTTCCAAGCGTACACCGCGGTGCTTGCGC
CTCACGACCGGATCATGGCCTTGGACCTGCCCCATGGCGGGCACCTTTCT
CACGGGTATCAGACTGATAGCAAGAAGATTTCGGCGGTATCGATTTTTTT
CGAGACGTTCCCGTATCGgtaggtgagggaagggagggagaaaaaggagg
aagggagggagaaaaaggagggagggagaatggagggatggcggaaggga
gggaggacgggagagctatgtatgtcaaaaatttgtgcttgatgcggctt
tttttacgccacgtccgaagGTTGGACGAGTCGACAGGGAGGATTGACTA
CGACAAGATGGAGGAGAACGCCGCCTTGTTCCGGCCCAAGCTGTTGGTGG
CGGGGGCCTCGGCATACGCCCGGACGATCGATTACGAGAGGATGAGGAAG
gtgagcttatccctcccagcaagcctctctttatttctttctctgcccgc
tttatcagacacccttcagattcttcttacctatctctccccctcccttc
cccctctcactacctctctttccccccccctttcccctctcactaactct
ctcagATTGCTGACAAACACAATGCTTATCTCCTCTCCGACATGGCACAC
ATCTCGGGCTTGGTAGCCGCAGGCGTGATTCCTTCTCCTTTCCCCCACTC
CGACATCGTGACAACGACGACTCACAAGTCTCTGCGCGGCCCGAGGGGGG
CTATGATTTTCTACCGGAAGGGGGTGAGGAAGGTGACGAAGAAGGGGGTG
GAGATACCCTACGACTTGGAGGAGAAAATAAATTTCGCCGTCTTCCCGGG
CTTGCAAGGGGGCCCTCACAACCACACCATTGCTGCCCTGGCCACGGCGC
TCAAGCAGGTGGCAACCCCTGAGTTCAAAAAGTACCAGGAGCAAGTGCTC
AAGAACAGCGCCAGGCTGGCGGATACTCTCTTGAAGGCGGGCTACTCCCT
CGTGTCCGGCGGCACGGACAACCATTTGGTGCTCGTCGATTTGAAGCCGC
AGCAGgtaagacccatctcttccttcttgattccctccctcgctccctcc
ctccctcgctccctccctccctgatggaatctttgatatgacgtgggcat
atgggcgagagggcgcaacaagaggataacaaacctcatctcccctccat
taattccttccatactctctcccctctttccttcctccttcttccctccc
ttcctctctgtagGTGGACGGCGCCCGTGTGGAGCGTGTGATGGAGCTTG
CCAACATGGCGGCCAACAAAAACACGGTGCCCGGGGACAGGAGCGCCTTG
ACGCCCGGGGGCATTCGTATCGGCTGCCCGGCCTTGACGAGCCGGGGGTT
TACGGAGGAGGACTTCGAGCAAgtgcgttcaatctttgtttcactccctt
gcttttcattactcccgtacttgtttgtgagtcttgagagacaaagagca
cgccgtgacctttccctgcttccctccccccctgcccccctttagGTCGG
CCACTTTTTCGACCGGTCCGTGAAAATCGCCCAAGCCATCAAGAAGGAAA
CGGGCCCCAAGATCAAGGACTTCAAAGAGGCCTTGAAGGATGGCCCGGGG
AAATACGGAGAGGTGACGAAGCTCAAGGAGGACGTTGTGGCCTTTGCCAA
AAAGTTCCCGACTGTTGGGTTCTAGGGAGGGAGGAAGCGGACATAGACAG
ACAGGCGGAAAAAGAGGAAGAGAGTGAGGAAGAAAGCGCTGTTGAGTCTC
ACCGGTGAGTGTGTGCGCGTGTGTTATATAAAATATTCAAGGAGAAGGAT
AGAGTTTCTCAAGGCTGTGTGTGATTTGTGTGTGAGTTAAGAAAGGGAGA
GCAGTGAAAGGACTGTAGGACGTGCCTACACCTGAACAGCTTGAATGATA
AAAAAGAAGAGACTGTGGAGAGATGGACATGCAACCGAGATCACAGAGGT
TGCCCTCCTCATCT
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protein sequence of NO20G01610.1

>NO20G01610.1-protein ID=NO20G01610.1-protein|Name=NO20G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MLLRHGSKKLSVMPRLTSMIRSITSETKSWATALNEPLVKTDPDLYAIIE
QEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNEN
IDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRI
MALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEE
NAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAA
GVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLE
EKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLA
DTLLKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTV
PGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKKET
GPKIKDFKEALKDGPGKYGEVTKLKEDVVAFAKKFPTVGF*
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Synonyms
Publications