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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr20 | genome | chr20:492929..496642 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G01610.1 vs.
Match: XP_005852729.1 (glycine hydroxymethyltransferase [Nannochloropsis gaditana CCMP526]; EKU23102.1 glycine hydroxymethyltransferase [Nannochloropsis gaditana CCMP526]; EWM22099.1 serine hydroxymethyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 886.7 bits (2290), Expect = 3.200e-254 Identity = 442/490 (90.20%), Postives = 465/490 (94.90%), Query Frame = 0
Query: 1 MLLRHGSKKLSVMPRLTSMIRSITSETKSWATALNEPLVKTDPDLYAIIEQEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNENIDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLADTLLKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKKETGPKIKDFKEALKDGPGKYGEVTKLKEDVVAFAKKFPTVGF 491
M LR GS L++ R+ ++RSITSETKSWAT+LNEPL TDPDL+AIIEQEK+RQ+ESLVLIASENFTSKSVFDALGSVMSNKYSEGYP ARYYGGNENIDKVESLCQ+RAL AF LDP WGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDE TGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAG IPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVR+VTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQ A+PEFKKYQEQVL+NS RLA+TL KAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGD+SALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDR+VKIAQ IK+ETGPKIKDFKEAL++GPGK+ + LK+DVVAFA+KFPTVGF
Sbjct: 5 MFLRRGSNTLALGRRMP-ILRSITSETKSWATSLNEPLKTTDPDLHAIIEQEKVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAAGAIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRRVTKKGVEIPYDLEEKINFAVFPGLQGGPHNHTIAALATALKQAASPEFKKYQEQVLQNSKRLAETLTKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTVPGDKSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRAVKIAQEIKRETGPKIKDFKEALREGPGKHQALVDLKKDVVAFAQKFPTVGF 493
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G01610.1 ID=NO20G01610.1|Name=NO20G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2449bp ATGCTGCCTTTGACAGCGGTCTGTGCATGGGAAGAAAGAGAGTAGTTGAG TGGTGAGTGGGTGGGTGAGAAGCGCGGCACTGTGTTGGTTGCTGGAATGT ACTTTTGTAGAGAAGTACACGTGCATGTACTCTAAAGCTTATTTGTGTTG CTCATCTATATTTTTCGCTTTCTTTCGTCAAATCGTGCATGATAGGTGGA GGAGGACTGTCCTGGACGGACAAGGGAAGGAGGTTTCGTGCACCATCTTT TTGTGTATTTGTGTATGACGACGCTTGACAGTGATCACCAGCCCATCAAT TATTAACTCGTGCAATACGTCCACGCTCTGCCAAACTCGAGACTTTTATT CGTGCACAGCCACATGACAGGGCGGGCGGATAAAAACATTTTTTTGAAAC AAGTCACATTCATAAAAGGTTGCTTAAGGAGCGATGAGAGGCAGAAGCAG GATCTGCACAAGAACCAACCTAGTTGCACACCTGCTGGATGCGTATCCAT GTCCTCGTGCTAGTTCGTATGCATTGCTATATTTGAGACACACCTGACTG AGATGCTAAACCCTGACTGAGATGGTAAAATTTAGCCTCCCCACCCTGCA CTGCACCCCCAGCAACGTACAGGCGCCCCTTCAGAGAGCAAAGTAAACGT GCCCCTGCCGCCCTTTTACGACAACCTCGCCATAATCATGCTCCTTCGCC ATGGCAGCAAGAAACTGTCTGTCATGCCTCGGCTTACGTCTATGATCAGA AGTATCACTTCGGAGACAAAATCATGGGCGACGGCGTTGAACGAGCCGCT GGTGAAGACCGACCCTGACTTATATGCCATCATTGAGCAAGAGAAGATCC GGCAGCAGGAGTCCTTAGTGCTGATTGCCTCAGAGAATTTCACGTCCAAG TCAGTGTTCGACGCCCTCGGCTCTGTCATGTCCAACAAGTACTCGGAGGG CTACCCGGCCGCACGCTACTATGGTGGCAATGAGAATATTGACAAGGTAG AATCTCTCTGTCAGAAACGCGCTTTAGACGCCTTTGGCCTGGACCCCAAA GAGTGGGGCGTGAACGTGCAAACCCTCTCGGGCTCGCCGGCCAACTTCCA AGCGTACACCGCGGTGCTTGCGCCTCACGACCGGATCATGGCCTTGGACC TGCCCCATGGCGGGCACCTTTCTCACGGGTATCAGACTGATAGCAAGAAG ATTTCGGCGGTATCGATTTTTTTCGAGACGTTCCCGTATCGGTTGGACGA GTCGACAGGGAGGATTGACTACGACAAGATGGAGGAGAACGCCGCCTTGT TCCGGCCCAAGCTGTTGGTGGCGGGGGCCTCGGCATACGCCCGGACGATC GATTACGAGAGGATGAGGAAGATTGCTGACAAACACAATGCTTATCTCCT CTCCGACATGGCACACATCTCGGGCTTGGTAGCCGCAGGCGTGATTCCTT CTCCTTTCCCCCACTCCGACATCGTGACAACGACGACTCACAAGTCTCTG CGCGGCCCGAGGGGGGCTATGATTTTCTACCGGAAGGGGGTGAGGAAGGT GACGAAGAAGGGGGTGGAGATACCCTACGACTTGGAGGAGAAAATAAATT TCGCCGTCTTCCCGGGCTTGCAAGGGGGCCCTCACAACCACACCATTGCT GCCCTGGCCACGGCGCTCAAGCAGGTGGCAACCCCTGAGTTCAAAAAGTA CCAGGAGCAAGTGCTCAAGAACAGCGCCAGGCTGGCGGATACTCTCTTGA AGGCGGGCTACTCCCTCGTGTCCGGCGGCACGGACAACCATTTGGTGCTC GTCGATTTGAAGCCGCAGCAGGTGGACGGCGCCCGTGTGGAGCGTGTGAT GGAGCTTGCCAACATGGCGGCCAACAAAAACACGGTGCCCGGGGACAGGA GCGCCTTGACGCCCGGGGGCATTCGTATCGGCTGCCCGGCCTTGACGAGC CGGGGGTTTACGGAGGAGGACTTCGAGCAAGTCGGCCACTTTTTCGACCG GTCCGTGAAAATCGCCCAAGCCATCAAGAAGGAAACGGGCCCCAAGATCA AGGACTTCAAAGAGGCCTTGAAGGATGGCCCGGGGAAATACGGAGAGGTG ACGAAGCTCAAGGAGGACGTTGTGGCCTTTGCCAAAAAGTTCCCGACTGT TGGGTTCTAGGGAGGGAGGAAGCGGACATAGACAGACAGGCGGAAAAAGA GGAAGAGAGTGAGGAAGAAAGCGCTGTTGAGTCTCACCGGTGAGTGTGTG CGCGTGTGTTATATAAAATATTCAAGGAGAAGGATAGAGTTTCTCAAGGC TGTGTGTGATTTGTGTGTGAGTTAAGAAAGGGAGAGCAGTGAAAGGACTG TAGGACGTGCCTACACCTGAACAGCTTGAATGATAAAAAAGAAGAGACTG TGGAGAGATGGACATGCAACCGAGATCACAGAGGTTGCCCTCCTCATCT back to topprotein sequence of NO20G01610.1 >NO20G01610.1-protein ID=NO20G01610.1-protein|Name=NO20G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp MLLRHGSKKLSVMPRLTSMIRSITSETKSWATALNEPLVKTDPDLYAIIE QEKIRQQESLVLIASENFTSKSVFDALGSVMSNKYSEGYPAARYYGGNEN IDKVESLCQKRALDAFGLDPKEWGVNVQTLSGSPANFQAYTAVLAPHDRI MALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDESTGRIDYDKMEE NAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLLSDMAHISGLVAA GVIPSPFPHSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGVEIPYDLE EKINFAVFPGLQGGPHNHTIAALATALKQVATPEFKKYQEQVLKNSARLA DTLLKAGYSLVSGGTDNHLVLVDLKPQQVDGARVERVMELANMAANKNTV PGDRSALTPGGIRIGCPALTSRGFTEEDFEQVGHFFDRSVKIAQAIKKET GPKIKDFKEALKDGPGKYGEVTKLKEDVVAFAKKFPTVGF* back to topmRNA from alignment at chr20:492929..496642+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G01610.1 ID=NO20G01610.1|Name=NO20G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3714bp|location=Sequence derived from alignment at chr20:492929..496642+ (Nannochloropsis oceanica) ATGCTGCCTTTGACAGCGGTCTGTGCATGGGAAGAAAGAGAGTAGTTGAG
TGGTGAGTGGGTGGGTGAGAAGCGCGGCACTGTGTTGGTTGCTGGAATGT
ACTTTTGTAGAGAAGTACACGTGCATGTACTCTAAAGCTTATTTGTGTTG
CTCATCTATATTTTTCGCTTTCTTTCGTCAAATCGTGCATGATAGGTGGA
GGAGGACTGTCCTGGACGGACAAGGGAAGGAGGTTTCGTGCACCATCTTT
TTGTGTATTTGTGTATGACGACGCTTGACAGTGATCACCAGCCCATCAAT
TATTAACTCGTGCAATACGTCCACGCTCTGCCAAACTCGAGACTTTTATT
CGTGCACAGCCACATGACAGGGCGGGCGGATAAAAACATTTTTTTGAAAC
AAGTCACATTCATAAAAGGTTGCTTAAGGAGCGATGAGAGGCAGAAGCAG
GATCTGCACAAGAACCAACCTAGTTGCACACCTGCTGGATGCGTATCCAT
GTCCTCGTGCTAGTTCGTATGCATTGCTATATTTGAGACACACCTGACTG
AGATGCTAAACCCTGACTGAGATGGTAAAATTTAGCCTCCCCACCCTGCA
CTGCACCCCCAGCAACGTACAGGCGCCCCTTCAGAGAGCAAAGTAAACGT
GCCCCTGCCGCCCTTTTACGACAACCTCGCCATAATCATGCTCCTTCGCC
ATGGCAGCAAGAAACTGTCTGTCATGCCTCGGCTTACGTCTATGATCAGG
TAAGTCTCAGTGGAGAAGTCAGAGTGTATCATGGGGGTTGCTGCTGCTGC
GGTGGAAGTACAAGCGGGAATTCGGTGCGTTAGAGACTGTGTATGTCTGA
CAATCGTCTGCGTTATTGCGACCACTGCTTCCAGCATTTATGTGTGAGAT
CACCAGTAATGTGTGTGGTGGAATCTGGCGGGCGCATCCACGGCCTCAAA
CGCCACACAAGCAAGAGCCACACAAGAGCAGGATCAGAAGATAAACGTCA
ACCCTCTACACTCCCCCTCTTTTCCCCCCCTTTCCCGTCCCCATTCCTAT
CCTACTCTTGTAGAAGTATCACTTCGGAGACAAAATCATGGGCGACGGCG
TTGAACGAGCCGCTGGTGAAGACCGACCCTGACTTATATGCCATCATTGA
GCAAGAGAAGATCCGGCAGCAGGAGTCCTTAGTGCTGATTGCCTCAGAGA
ATTTCACGTCCAAGTAAGTGGTCGTCCAGAAAAGGCTTGAAATAAGAAAA
CTGAAGACATCTTGATGAAAAAAGAGAGTAAAGTGTGTCTCCGTGACCAA
CTCATGTCTTTGACCATCTCATGTCTTACATCATTCCTCCTCCCTCCATC
TTTTCCGCCTTTAGGTCAGTGTTCGACGCCCTCGGCTCTGTCATGTCCAA
CAAGTACTCGGAGGGCTACCCGGCCGCACGCTACTATGGTGGCAATGAGA
ATATTGACAAGGCAAGACAAATATTATAGGGGATACAAAGAAATAGCGCG
ATTCTCATCCCTCCCTTTTTTCGTCCCTTCTCTCCCTTCTCCCCCGCTAG
GCACCCCGACCTCAGTGATCAAGACCTGCATGTCTGACCTCACCCCTCCC
TATGTCACTCCTTCCTTCAATAGGTAGAATCTCTCTGTCAGAAACGCGCT
TTAGACGCCTTTGGCCTGGACCCCAAAGAGTGGGGCGTGAACGTGCAAAC
CCTCTCGGGCTCGCCGGCCAACTTCCAAGCGTACACCGCGGTGCTTGCGC
CTCACGACCGGATCATGGCCTTGGACCTGCCCCATGGCGGGCACCTTTCT
CACGGGTATCAGACTGATAGCAAGAAGATTTCGGCGGTATCGATTTTTTT
CGAGACGTTCCCGTATCGGTAGGTGAGGGAAGGGAGGGAGAAAAAGGAGG
AAGGGAGGGAGAAAAAGGAGGGAGGGAGAATGGAGGGATGGCGGAAGGGA
GGGAGGACGGGAGAGCTATGTATGTCAAAAATTTGTGCTTGATGCGGCTT
TTTTTACGCCACGTCCGAAGGTTGGACGAGTCGACAGGGAGGATTGACTA
CGACAAGATGGAGGAGAACGCCGCCTTGTTCCGGCCCAAGCTGTTGGTGG
CGGGGGCCTCGGCATACGCCCGGACGATCGATTACGAGAGGATGAGGAAG
GTGAGCTTATCCCTCCCAGCAAGCCTCTCTTTATTTCTTTCTCTGCCCGC
TTTATCAGACACCCTTCAGATTCTTCTTACCTATCTCTCCCCCTCCCTTC
CCCCTCTCACTACCTCTCTTTCCCCCCCCCTTTCCCCTCTCACTAACTCT
CTCAGATTGCTGACAAACACAATGCTTATCTCCTCTCCGACATGGCACAC
ATCTCGGGCTTGGTAGCCGCAGGCGTGATTCCTTCTCCTTTCCCCCACTC
CGACATCGTGACAACGACGACTCACAAGTCTCTGCGCGGCCCGAGGGGGG
CTATGATTTTCTACCGGAAGGGGGTGAGGAAGGTGACGAAGAAGGGGGTG
GAGATACCCTACGACTTGGAGGAGAAAATAAATTTCGCCGTCTTCCCGGG
CTTGCAAGGGGGCCCTCACAACCACACCATTGCTGCCCTGGCCACGGCGC
TCAAGCAGGTGGCAACCCCTGAGTTCAAAAAGTACCAGGAGCAAGTGCTC
AAGAACAGCGCCAGGCTGGCGGATACTCTCTTGAAGGCGGGCTACTCCCT
CGTGTCCGGCGGCACGGACAACCATTTGGTGCTCGTCGATTTGAAGCCGC
AGCAGGTAAGACCCATCTCTTCCTTCTTGATTCCCTCCCTCGCTCCCTCC
CTCCCTCGCTCCCTCCCTCCCTGATGGAATCTTTGATATGACGTGGGCAT
ATGGGCGAGAGGGCGCAACAAGAGGATAACAAACCTCATCTCCCCTCCAT
TAATTCCTTCCATACTCTCTCCCCTCTTTCCTTCCTCCTTCTTCCCTCCC
TTCCTCTCTGTAGGTGGACGGCGCCCGTGTGGAGCGTGTGATGGAGCTTG
CCAACATGGCGGCCAACAAAAACACGGTGCCCGGGGACAGGAGCGCCTTG
ACGCCCGGGGGCATTCGTATCGGCTGCCCGGCCTTGACGAGCCGGGGGTT
TACGGAGGAGGACTTCGAGCAAGTGCGTTCAATCTTTGTTTCACTCCCTT
GCTTTTCATTACTCCCGTACTTGTTTGTGAGTCTTGAGAGACAAAGAGCA
CGCCGTGACCTTTCCCTGCTTCCCTCCCCCCCTGCCCCCCTTTAGGTCGG
CCACTTTTTCGACCGGTCCGTGAAAATCGCCCAAGCCATCAAGAAGGAAA
CGGGCCCCAAGATCAAGGACTTCAAAGAGGCCTTGAAGGATGGCCCGGGG
AAATACGGAGAGGTGACGAAGCTCAAGGAGGACGTTGTGGCCTTTGCCAA
AAAGTTCCCGACTGTTGGGTTCTAGGGAGGGAGGAAGCGGACATAGACAG
ACAGGCGGAAAAAGAGGAAGAGAGTGAGGAAGAAAGCGCTGTTGAGTCTC
ACCGGTGAGTGTGTGCGCGTGTGTTATATAAAATATTCAAGGAGAAGGAT
AGAGTTTCTCAAGGCTGTGTGTGATTTGTGTGTGAGTTAAGAAAGGGAGA
GCAGTGAAAGGACTGTAGGACGTGCCTACACCTGAACAGCTTGAATGATA
AAAAAGAAGAGACTGTGGAGAGATGGACATGCAACCGAGATCACAGAGGT
TGCCCTCCTCATCT back to topCoding sequence (CDS) from alignment at chr20:492929..496642+ >NO20G01610.1 ID=NO20G01610.1|Name=NO20G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr20:492929..496642+ (Nannochloropsis oceanica) ATGCTCCTTCGCCATGGCAGCAAGAAACTGTCTGTCATGCCTCGGCTTAC GTCTATGATCAGAAGTATCACTTCGGAGACAAAATCATGGGCGACGGCGT TGAACGAGCCGCTGGTGAAGACCGACCCTGACTTATATGCCATCATTGAG CAAGAGAAGATCCGGCAGCAGGAGTCCTTAGTGCTGATTGCCTCAGAGAA TTTCACGTCCAAGTCAGTGTTCGACGCCCTCGGCTCTGTCATGTCCAACA AGTACTCGGAGGGCTACCCGGCCGCACGCTACTATGGTGGCAATGAGAAT ATTGACAAGGTAGAATCTCTCTGTCAGAAACGCGCTTTAGACGCCTTTGG CCTGGACCCCAAAGAGTGGGGCGTGAACGTGCAAACCCTCTCGGGCTCGC CGGCCAACTTCCAAGCGTACACCGCGGTGCTTGCGCCTCACGACCGGATC ATGGCCTTGGACCTGCCCCATGGCGGGCACCTTTCTCACGGGTATCAGAC TGATAGCAAGAAGATTTCGGCGGTATCGATTTTTTTCGAGACGTTCCCGT ATCGGTTGGACGAGTCGACAGGGAGGATTGACTACGACAAGATGGAGGAG AACGCCGCCTTGTTCCGGCCCAAGCTGTTGGTGGCGGGGGCCTCGGCATA CGCCCGGACGATCGATTACGAGAGGATGAGGAAGATTGCTGACAAACACA ATGCTTATCTCCTCTCCGACATGGCACACATCTCGGGCTTGGTAGCCGCA GGCGTGATTCCTTCTCCTTTCCCCCACTCCGACATCGTGACAACGACGAC TCACAAGTCTCTGCGCGGCCCGAGGGGGGCTATGATTTTCTACCGGAAGG GGGTGAGGAAGGTGACGAAGAAGGGGGTGGAGATACCCTACGACTTGGAG GAGAAAATAAATTTCGCCGTCTTCCCGGGCTTGCAAGGGGGCCCTCACAA CCACACCATTGCTGCCCTGGCCACGGCGCTCAAGCAGGTGGCAACCCCTG AGTTCAAAAAGTACCAGGAGCAAGTGCTCAAGAACAGCGCCAGGCTGGCG GATACTCTCTTGAAGGCGGGCTACTCCCTCGTGTCCGGCGGCACGGACAA CCATTTGGTGCTCGTCGATTTGAAGCCGCAGCAGGTGGACGGCGCCCGTG TGGAGCGTGTGATGGAGCTTGCCAACATGGCGGCCAACAAAAACACGGTG CCCGGGGACAGGAGCGCCTTGACGCCCGGGGGCATTCGTATCGGCTGCCC GGCCTTGACGAGCCGGGGGTTTACGGAGGAGGACTTCGAGCAAGTCGGCC ACTTTTTCGACCGGTCCGTGAAAATCGCCCAAGCCATCAAGAAGGAAACG GGCCCCAAGATCAAGGACTTCAAAGAGGCCTTGAAGGATGGCCCGGGGAA ATACGGAGAGGTGACGAAGCTCAAGGAGGACGTTGTGGCCTTTGCCAAAA AGTTCCCGACTGTTGGGTTCTAG back to top
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