NO20G01580, NO20G01580 (gene) Nannochloropsis oceanica

Overview
NameNO20G01580
Unique NameNO20G01580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1090
Alignment locationchr20:484286..485375 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:484286..485375 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G01580 vs. NCBI_GenBank
Match: EWM22101.1 (hypothetical protein Naga_100039g8 [Nannochloropsis gaditana])

HSP 1 Score: 228.8 bits (582), Expect = 1.800e-56
Identity = 115/146 (78.77%), Postives = 131/146 (89.73%), Query Frame = 0 
Query:   90 GLVNLLRVRAYIVTLKETLQELLDNGEKSAPAEINQQIKYLVRTIRMAESIHEAAMLVEGGDRARDAARTAGRASYEYLTQVIEFSGFEDMKRDGVSKYATLSSPERIQFALKCLAAADLELSRYFRYFPPAVLADAQGIYESYFL 236
            GLVN+LR+RA+IVTLKETL+EL+D G  SAPAE+NQQIKYLVRT+RM ESI++AAML+E   R R+AAR  GR+ YEYLTQVIEFSGFEDMKR+GVSKYATLSSPERI+FALKCL AA+ EL RYFRYFP AV+ADAQGIYESYFL
Sbjct:   96 GLVNILRIRAFIVTLKETLKELVDKGATSAPAEVNQQIKYLVRTVRMPESINDAAMLIE-SSRDREAARGVGRSGYEYLTQVIEFSGFEDMKREGVSKYATLSSPERIEFALKCLTAAEQELERYFRYFPSAVIADAQGIYESYFL 240
The following BLAST results are available for this feature:
BLAST of NO20G01580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22101.11.800e-5678.77hypothetical protein Naga_100039g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002691NSK002691Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01580.1NO20G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594778gene_6374Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100039g8gene8357Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01580.1NO20G01580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01580 ID=NO20G01580|Name=NO20G01580|organism=Nannochloropsis oceanica|type=gene|length=1090bp
ACCCATAGGTAGCATGGTTACGCTAAGAAGGCCGTGGCGGAGAGCATGGT
CGCGGGGTAAAGTCCTCGCTCTCGTCCTTGGAGTCCTGCTCAGCCCACCA
TTTGCTCAAGCCTACGTAAAGCCCCCCATCCCCTCCATGGAGATGCATCG
TCAAAAACACGATGCCCTCCACCATCGTCGCTGTGCCCTGCAGCACATTG
CTGGCATGGCTAGTGGGCTTCTCCTTTGGGGGGGCGTCGCACCATCAGCA
TGGGCAGCGGACAGTAGCGGCGGACGCAAGGGACTCGTTAACCTGCTGCG
AGTACGGGCGTATATTGTGACCCTCAAAGAAACCCTTCAAGAATTGCTCG
ACAACGGTGAAAAGTCCGCTCCGGCAGAAATCAATCAACAGATCAAATAT
TTGGTGCGCACGATTCGCATGGCCGAATCCATACATGAGGCAGCCATGTT
GGTAGAGGGTGGGGACAGGGCTCGGGACGCCGCCAGGACTGCAGGAAGAG
CCAGTTACGAGTATTTGACTCAGGTCATTGAATTTAGTGGGTTTGAAGAC
ATGAAACGCGACGGGGTGAGCAAGTACGCCACTTTATCCAGCCCTGAGCG
GATTCAGTTTGCGCTCAAATGTCTGGCGGCTGCGGATTTAGgtatatggc
gggaatggcatgactgggaaaaaggaattcttggttgggcagcagaggcg
ttatatacgttgacatcctatcaatatgctcagtcttgttttgagcaaga
tgaatgtaggcattcctcatacgataaagatcgtgtcatgctctttatgt
atataacttttcctgaaagtcatcaataatctgcccaaaactcacatcct
cccccattcattctttccactttctctgtccctcctccttatttaaatta
acagAACTTAGTCGGTACTTCCGCTACTTTCCGCCGGCGGTGCTTGCCGA
TGCGCAAGGCATCTACGAGTCTTACTTTTTGTCTGGTGGCGGATGAGGAA
GGGTCTGAGAGCAAAATGAAGAACAGAATGATAATAAGATGTATATCTTT
AAAGTGTATGACCAACCAGCCGGCAGCTCTACTGACTGAA
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protein sequence of NO20G01580.1

>NO20G01580.1-protein ID=NO20G01580.1-protein|Name=NO20G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MVTLRRPWRRAWSRGKVLALVLGVLLSPPFAQAYVKPPIPSMEMHRQKHD
ALHHRRCALQHIAGMASGLLLWGGVAPSAWAADSSGGRKGLVNLLRVRAY
IVTLKETLQELLDNGEKSAPAEINQQIKYLVRTIRMAESIHEAAMLVEGG
DRARDAARTAGRASYEYLTQVIEFSGFEDMKRDGVSKYATLSSPERIQFA
LKCLAAADLELSRYFRYFPPAVLADAQGIYESYFLSGGG*
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Synonyms
Publications