NO20G01580.1, NO20G01580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01580.1
Unique NameNO20G01580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length827
Alignment locationchr20:484286..485375 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:484286..485375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01580.1 vs.
Match: EWM22101.1 (hypothetical protein Naga_100039g8 [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 2.100e-65
Identity = 145/235 (61.70%), Postives = 172/235 (73.19%), Query Frame = 0 
Query:    8 WRRAWSRGKVLALVLGVLLSPPFAQAYVKPPIP-SMEMHRQKHD--ALHHRRCALQHIAGMASGLLLWGGVAP----SAWAADSSGGRKGLVNLLRVRAYIVTLKETLQELLDNGEKSAPAEINQQIKYLVRTIRMAESIHEAAMLVEGGDRARDAARTAGRASYEYLTQVIEFSGFEDMKRDGVSKYATLSSPERIQFALKCLAAADLELSRYFRYFPPAVLADAQGIYESYFL 236
            W R W    ++ +V  +   P     Y  P I  S+  H  +    AL  RR AL+H   ++ G+ L   + P    SA AAD SGGRKGLVN+LR+RA+IVTLKETL+EL+D G  SAPAE+NQQIKYLVRT+RM ESI++AAML+E   R R+AAR  GR+ YEYLTQVIEFSGFEDMKR+GVSKYATLSSPERI+FALKCL AA+ EL RYFRYFP AV+ADAQGIYESYFL
Sbjct:    8 WDRRWPFFTLIPIVF-IFSFPSHTCGYHSPQISLSLRRHVMQRPCHALQQRRHALRHALTVSLGVCLGANLTPRPLPSARAADRSGGRKGLVNILRIRAFIVTLKETLKELVDKGATSAPAEVNQQIKYLVRTVRMPESINDAAMLIESS-RDREAARGVGRSGYEYLTQVIEFSGFEDMKREGVSKYATLSSPERIEFALKCLTAAEQELERYFRYFPSAVIADAQGIYESYFL 240
The following BLAST results are available for this feature:
BLAST of NO20G01580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22101.12.100e-6561.70hypothetical protein Naga_100039g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01580NO20G01580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01580.1NO20G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01580.1.cds1NO20G01580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01580.1.cds2NO20G01580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01580.1 ID=NO20G01580.1|Name=NO20G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=827bp
ACCCATAGGTAGCATGGTTACGCTAAGAAGGCCGTGGCGGAGAGCATGGT
CGCGGGGTAAAGTCCTCGCTCTCGTCCTTGGAGTCCTGCTCAGCCCACCA
TTTGCTCAAGCCTACGTAAAGCCCCCCATCCCCTCCATGGAGATGCATCG
TCAAAAACACGATGCCCTCCACCATCGTCGCTGTGCCCTGCAGCACATTG
CTGGCATGGCTAGTGGGCTTCTCCTTTGGGGGGGCGTCGCACCATCAGCA
TGGGCAGCGGACAGTAGCGGCGGACGCAAGGGACTCGTTAACCTGCTGCG
AGTACGGGCGTATATTGTGACCCTCAAAGAAACCCTTCAAGAATTGCTCG
ACAACGGTGAAAAGTCCGCTCCGGCAGAAATCAATCAACAGATCAAATAT
TTGGTGCGCACGATTCGCATGGCCGAATCCATACATGAGGCAGCCATGTT
GGTAGAGGGTGGGGACAGGGCTCGGGACGCCGCCAGGACTGCAGGAAGAG
CCAGTTACGAGTATTTGACTCAGGTCATTGAATTTAGTGGGTTTGAAGAC
ATGAAACGCGACGGGGTGAGCAAGTACGCCACTTTATCCAGCCCTGAGCG
GATTCAGTTTGCGCTCAAATGTCTGGCGGCTGCGGATTTAGAACTTAGTC
GGTACTTCCGCTACTTTCCGCCGGCGGTGCTTGCCGATGCGCAAGGCATC
TACGAGTCTTACTTTTTGTCTGGTGGCGGATGAGGAAGGGTCTGAGAGCA
AAATGAAGAACAGAATGATAATAAGATGTATATCTTTAAAGTGTATGACC
AACCAGCCGGCAGCTCTACTGACTGAA
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protein sequence of NO20G01580.1

>NO20G01580.1-protein ID=NO20G01580.1-protein|Name=NO20G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MVTLRRPWRRAWSRGKVLALVLGVLLSPPFAQAYVKPPIPSMEMHRQKHD
ALHHRRCALQHIAGMASGLLLWGGVAPSAWAADSSGGRKGLVNLLRVRAY
IVTLKETLQELLDNGEKSAPAEINQQIKYLVRTIRMAESIHEAAMLVEGG
DRARDAARTAGRASYEYLTQVIEFSGFEDMKRDGVSKYATLSSPERIQFA
LKCLAAADLELSRYFRYFPPAVLADAQGIYESYFLSGGG*
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mRNA from alignment at chr20:484286..485375-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01580.1 ID=NO20G01580.1|Name=NO20G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp|location=Sequence derived from alignment at chr20:484286..485375- (Nannochloropsis oceanica)
ACCCATAGGTAGCATGGTTACGCTAAGAAGGCCGTGGCGGAGAGCATGGT
CGCGGGGTAAAGTCCTCGCTCTCGTCCTTGGAGTCCTGCTCAGCCCACCA
TTTGCTCAAGCCTACGTAAAGCCCCCCATCCCCTCCATGGAGATGCATCG
TCAAAAACACGATGCCCTCCACCATCGTCGCTGTGCCCTGCAGCACATTG
CTGGCATGGCTAGTGGGCTTCTCCTTTGGGGGGGCGTCGCACCATCAGCA
TGGGCAGCGGACAGTAGCGGCGGACGCAAGGGACTCGTTAACCTGCTGCG
AGTACGGGCGTATATTGTGACCCTCAAAGAAACCCTTCAAGAATTGCTCG
ACAACGGTGAAAAGTCCGCTCCGGCAGAAATCAATCAACAGATCAAATAT
TTGGTGCGCACGATTCGCATGGCCGAATCCATACATGAGGCAGCCATGTT
GGTAGAGGGTGGGGACAGGGCTCGGGACGCCGCCAGGACTGCAGGAAGAG
CCAGTTACGAGTATTTGACTCAGGTCATTGAATTTAGTGGGTTTGAAGAC
ATGAAACGCGACGGGGTGAGCAAGTACGCCACTTTATCCAGCCCTGAGCG
GATTCAGTTTGCGCTCAAATGTCTGGCGGCTGCGGATTTAGGTATATGGC
GGGAATGGCATGACTGGGAAAAAGGAATTCTTGGTTGGGCAGCAGAGGCG
TTATATACGTTGACATCCTATCAATATGCTCAGTCTTGTTTTGAGCAAGA
TGAATGTAGGCATTCCTCATACGATAAAGATCGTGTCATGCTCTTTATGT
ATATAACTTTTCCTGAAAGTCATCAATAATCTGCCCAAAACTCACATCCT
CCCCCATTCATTCTTTCCACTTTCTCTGTCCCTCCTCCTTATTTAAATTA
ACAGAACTTAGTCGGTACTTCCGCTACTTTCCGCCGGCGGTGCTTGCCGA
TGCGCAAGGCATCTACGAGTCTTACTTTTTGTCTGGTGGCGGATGAGGAA
GGGTCTGAGAGCAAAATGAAGAACAGAATGATAATAAGATGTATATCTTT
AAAGTGTATGACCAACCAGCCGGCAGCTCTACTGACTGAA
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Coding sequence (CDS) from alignment at chr20:484286..485375-

>NO20G01580.1 ID=NO20G01580.1|Name=NO20G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr20:484286..485375- (Nannochloropsis oceanica)
ATGGTTACGCTAAGAAGGCCGTGGCGGAGAGCATGGTCGCGGGGTAAAGT
CCTCGCTCTCGTCCTTGGAGTCCTGCTCAGCCCACCATTTGCTCAAGCCT
ACGTAAAGCCCCCCATCCCCTCCATGGAGATGCATCGTCAAAAACACGAT
GCCCTCCACCATCGTCGCTGTGCCCTGCAGCACATTGCTGGCATGGCTAG
TGGGCTTCTCCTTTGGGGGGGCGTCGCACCATCAGCATGGGCAGCGGACA
GTAGCGGCGGACGCAAGGGACTCGTTAACCTGCTGCGAGTACGGGCGTAT
ATTGTGACCCTCAAAGAAACCCTTCAAGAATTGCTCGACAACGGTGAAAA
GTCCGCTCCGGCAGAAATCAATCAACAGATCAAATATTTGGTGCGCACGA
TTCGCATGGCCGAATCCATACATGAGGCAGCCATGTTGGTAGAGGGTGGG
GACAGGGCTCGGGACGCCGCCAGGACTGCAGGAAGAGCCAGTTACGAGTA
TTTGACTCAGGTCATTGAATTTAGTGGGTTTGAAGACATGAAACGCGACG
GGGTGAGCAAGTACGCCACTTTATCCAGCCCTGAGCGGATTCAGTTTGCG
CTCAAATGTCTGGCGGCTGCGGATTTAGAACTTAGTCGGTACTTCCGCTA
CTTTCCGCCGGCGGTGCTTGCCGATGCGCAAGGCATCTACGAGTCTTACT
TTTTGTCTGGTGGCGGATGA
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Synonyms
Publications