NO20G01350, NO20G01350 (gene) Nannochloropsis oceanica

Overview
NameNO20G01350
Unique NameNO20G01350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5697
Alignment locationchr20:402161..407857 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:402161..407857 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR033371ARGLU1
Homology
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BLAST of NO20G01350 vs. NCBI_GenBank
Match: EWM22075.1 (hypothetical protein Naga_100039g28 [Nannochloropsis gaditana])

HSP 1 Score: 110.2 bits (274), Expect = 1.100e-20
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 0 
Query:  134 SRASLKEQRIVDEEVIRRFDDRIKELLEEKVSVYCESSEFKTFLDEMKKRKREEMLSKIDQDIRAEREAMLALERE 210
            SR S  EQRI+DEEVIRRFD RIKE LEEKVSVYCESSEF+  L++MKKRKREEML++IDQDIRAEREA+L LER+
Sbjct:  121 SRPSPLEQRILDEEVIRRFDSRIKEQLEEKVSVYCESSEFQKLLEDMKKRKREEMLNRIDQDIRAEREAVLDLERK 196
The following BLAST results are available for this feature:
BLAST of NO20G01350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22075.11.100e-2078.95hypothetical protein Naga_100039g28 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002671NSK002671Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01350.1NO20G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594687gene_6350Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100039g28gene8339Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01350.1NO20G01350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01350 ID=NO20G01350|Name=NO20G01350|organism=Nannochloropsis oceanica|type=gene|length=5697bp
ATCGCAGCCGAAGAAACATTTTGGCCTTTCTTTTCTTCATTCATTTCGTA
TTGTTTCGGCCGTCTTCTCTTTCTTATTATATCCCCATCTATCGTTTTCT
GTATCTCCGGACTCTATTTCCATTCGTTACACTCTACAAAGGAATCGCCT
CCCTCCATGCCTCCCTTCCTCCCTCCCTCTCCCCCTACTCAAAATACTTC
CGGCGCAATGCCCTCAACCTGATCTTCCCTTTCTTCCCTCCACTTCCTCC
TTTCGTCGTTGCACTCCCATCAGCACCACCATCAGCAGTATCGGTGGCAC
CTAAAAAGTCAAAAGCCTTTTTAACATTCTCCAAGTCTTCAGCCGACATC
ATGCTCATCCTCAACTGAAACCCCTCCGCCCCTGCCATCCCCTCCAACAC
CCTCTTTACCACCTCCCTCCTCCCCTCCATCCCTCCCCCCTCCCCTTCCT
TACACAGTTCTCTGGCTAACACTGCGTATATCTCACTAATTGTGTCCTCG
CTTGTGACTCTTTTGATGACTTTTGAGAAGGTTTGGGGACGGAATGAGGA
GAGGTAAGCGGCGAGACGAGCGGTGGAACCTGAATCTCCGCCCTTTTTCA
AGGTTCGCCAGTGTGTCTCGAGCTCGGAGATGCTTGTTGGGGGGGGGGGA
TTTTCTTCTTTCCGGAAGAAAGGGGGGAGGAAACGGAGGAGAAAACAGAG
GAGGAGGAGGAGGAGGGAAAAATGGAGGAATGACTGTTTTTGAGTGGGGT
TATGGGTAGCTGCTGTCCTTGACGACGTCGCTCTTGTTGTTCATCTTGCT
CTTGTCTTCTCCCTTCCTCCACCACGGCTATTTTTCGAAAAGCTTCCACA
GGTGGGACTCGAGGTCGCGTCGTCACTTCTTGCATCATGGAAGAGGTCCC
TCCCTCCTTCCCTCGTTCTTCACCGGCAATCTCCGCCCGGTGCGCTGCCA
AAATTGTTTTGAGTTCATTAGGGGGAGGATGCGGCGAGGAGGAGGGAGGG
ATGGATGACGCGCCTACCACTCCAGCAGCGCCCATATGTCCTACTTGTTT
AAAAAGCTGTTGATACTGACTCAACAGCGACTTAGCCAACCGTCTCTCCT
TTTGGGCCTCCGCGTTGCCGCTTTCTACCGCAAGAATCATGTTCATCTCC
TTCACAGCATTTTCCAATCCCTCCTTCGCCCTTCCCACCATCCCTTGTTT
CCGAACAACACACATGCTCTCCGCTTCCTTCTCTCTCGCTCTCAATACCT
CTTCCCTCGCCTCCTTCCCTGCCTCCTTCTTCTTCCACAATGCCTCCACT
GTTGCCAAGCATTCTGCTCCTCCTCTACACAAAGCCTTTCCCTTCCTGAA
TCGGGCTTTAATATTTCCCGGGTCCTGGTCGAGGACGAATGAGGCATCTC
GGAAAGCCTCCTCCCATCGTTCGAGTTTGAGGTGGGCCTGTGCGCGATTA
TTGTACAGGATGAGGGAAAGCTTAGTGGTGGTGGTGGCGGTGCTGCTGCG
GCTGGTATTGTGGTTGCTTTCGCTGAAATAAGTGGTGGTGGAACTGTTGC
TGCTGTCGCTGTTGGCGGCATCGGCGGCAATCGCTTCAGTATAGTGCTTT
ATGGCGGAATGGTAGTTTTTTTCTAACAAAGCATTGTTCCCTTGTTCTTT
CAAAATATGAGCTCGGTCGTTTCTGTTGCTGCTGTGGTTTTTGCTGCTAC
TACTTTTGGCACTGCTGCCATCCATCTTACTCGACCCCTGACGCTGCTGC
TGCTGCTGCCACTGTGCTTTCGTCACGTATTTTCCGTCTCTTACTTCCTC
GATGGGAAGACGTTGGAAGCCCGGGCGTACAGGAGGAGGCCAAATATAAC
CGTCTTTCCCTCCTTCCTTCCCTCCCTCCGTCCCCGCTGCTCCTACTGCT
GCCACCGCTACTGCCGCTGATTGTGGCCCAGGTGTGTTGGACGAGTCAGG
GTTGTCCCTCTCCTCGCCTGCATCTTGCTCTTCAACCGCTACCTTTTCCT
CCTTTTGCTCCACTAGCGAAATACCGGCAGAAACCGCGGGTATGTCGTCG
ACAAGAGAGTCGGCAGCAGGAGGAGGGGGAGGAAGATGAGGAGGAGGAGA
GGAACTGCTCGGTGGTGGCATTGCGGGCTCCCCCCCTCCCACTCTTTCTC
CTTCCTCTTTCTTCCCGTCCTCCTTATCCATCTTCGCCAACAGCGCCATT
GCTTCCTTTTCCTCCATTCCAGCCTTTCCACTTCCTCCTTTCATTTCTCC
CGGAGCAGCAGCAGCCGCACAAACCACCAAGACCTGCCTCAGATCCCCTC
GCGCTTTATCTCGTTTTTCCATTTTGTGCCTTATCATCCCTCGTCGAAGC
CAAGCCTTGGCATATGAGGGCTCTCTATTTATGGCCATTGTGCAGTCCGC
TTCAGCTTGGTCAAAAATTCCCTGTTTCAGCATGGCCAAGGCCCGATTCG
CACACACCACAGCATTTTCAGGAGCGTGGCCGAGTGACAGAGTGTAAGCG
GCGCGGGCTTCGGAATATTCCCCCTGCTTGAGTAGCTTGTTGCCGTCTTC
CTTCTTTTGGGCGGCGAGGAGGGGACGGAGCGAGAGAGGGGTGTGGCGGA
GGCATTCGCTCATGTCCCTTATTTCCTTTTCCGCAGCTTGGACCTTTTCG
TCCTCGTCCTCGTCCTCACATTCCTCCTCCCTCTCTTTTACTGCCATGAT
TGCTGTTGCTGATGCTTTGGTTCCTGCTGGTGCTGCTGTTGTTGCCGTTG
CAATCGGTAGTGCTGTAGCACTGCCCGAATTCGTCGTCGTCATCGTAATA
ATCGTCCTGGCAGACCGGGAAGGGGGACTACTCGACTCTACCACCACCAC
TCCTGGTTCATTCCTCATTCTATTACTCCCAACAGCAACACCACGCTTCA
TCCCCATCGCGGCATCTTTTCTTTCCATCTCATCACTCCACTCCTGCAAA
ATCTCTTCCTCCTTGGCGACCTCTACCGGGCACGGCTGCGCCCGCAACGC
CTTCACTTGGGCCTGGACTCGGGTAGGGGACAATAGCACTAGCCTGTCCA
ATGTTTCCCGTTCTAAATCGGGGTAGACACCATCTTGTCTGCCCTGGAGC
CGACGGAGGATGCAACGGATAACCTTGGGATCGTCGCAGTTTTGGATAAA
ATCGAAGTCGAGCAGGTCGGTAGTAATGGGGATGGGGGAACGCTCATCGG
CTGGGTACGGGGCCAACAGCAGTTCAGAAACAATATCCATGGCGTCCATT
TGCTGCTGTTGCTCGGTGCCGAGATGAGGAGACTAGGAGACTGCCTGTAG
AAAATGTACGTGTGTACTGGAGGAGTGTGAAAAGGGGGGGAGCATAGGAG
GCAGTGAAGCAAGCTTTCGGGTGAGGGGTTATTCTCGAAAGTGGCACGTT
TGAAGCGCTGTGGAAATGCGGAGGACGAGGAGGGGACGACTGCGTGCCAC
GTGGGTGTGTTGTGGGGGCGTGAAAGCGGCATAAATAGCGCTTTGGCCTG
GCTCAATTTTGGGTGTTGTTTCAGAAAGTTCCTTCAAGAAGCAACGCTCT
TATTTCATGTCCTCGTATTCTACTTTACAATACTTTAAACGTCCTCCCAC
CAACCACGCTTTCATCACAGCAACAATAACAAGCAAGGCCTCTTAACGTG
CCAAGCTATGTCGCGCAGCCGCTCGCGTTCTTCCGAGAGgtaagagacgc
tgatgaatatgcttgctgtttgctttctggacatcccacgagacgcgctc
ctcgcaccccacccacccacactccacatttacgcacaataaacgacaca
gAGAAAGAGGTGGCAGTACCAGCGGCATGCGGCGACGACGGGACGATGAC
CGTGACCGGGGGAGGGACCGAAATCACAAGAGGAGGGAGGACAGCGGGAG
CCGCAGCAGGGAGCGCGATCGCGATGGACGCAAGAAGCACCAGCATAGAG
ACAAGGAACGTGGAAAGGACAAGAAGAAGTATTCGTCGCGTCGCGATGGT
TCTGGTGGAGGAGGAAGCGGCAGTGGCAAGCGTCGTCGGCGGTCACCCTC
CTCATCCTCTTCCTTCTCGTCCTTGTCCCCTTCTCCCCTACGCAGCAAGA
CCCAAACCGGAGGGAGAGCACATCCCAAACCTCCTTCCACCACCGCATCC
ACAAGTGCTATGCTATATTCCCGTGCTTCTTTAAAAGAGCAACGGATCGT
TGATGAGGAGGTGATTCGTCGGTTTGATGATCGAATCAAGGAGTTATTAG
AAGAAAAAGTTTCTGTGTATTGCGAGTCCAGCGAGTTCAAAACCTTCCTC
GACGAAATGAAGAAACGGAAACGGGAAGAGATGCTGAGTAAAATTGACCA
GGACATTCGTGCAGAGCGTGAGGCAATGCTGGCGTTAGAAAGGGAGAAAG
CCGAAGCAGCGGCGGAGGAGCAGCGGAAGTTGGATGAGGTACTGGAGGAG
AATCGACGGAAGGTGGAAGAGCAGCGACGATTGGAGATGGAGGAAAAAGC
AAGGCAGGACGAACAGAAACTGATGCAGATTCAGCGACGGCAACAACAGG
AGGAGGAGGCAGAACGGCGGAGGGTGGTGAGTGTTGGAAGGGAAGGGGGG
TAGAGGTTTGGTGACTTGCGCCATTAATTCTGAGTGAAATTGCGAAGAAG
ACAAGCTGCCAATGCAGGCAGCACTTTGGGCCGCCTGCTTTGGAGGTGGA
CTATTCTGTCTTATTCCTTTCAAATGTATGAGTGTCTGGGGAGCACTTGT
CCCCCCTTTTCCTGTCTTTCCTCCTCCTCCTGCCCCCCCTTCCCCCCTCC
TTCTATTTCTTTTCGCCTCGGAGGTAAGCGGCACCGAGCAACAGCAGAGC
AGCAACAGTAGTAGCAGCATCAAGAAGGGGAAGTAGATTCCAGACCAGCA
TCCATAAGGGGCATGCCTCGAGGAGATACCGTCTCAGGTGTCTCAGGGCG
CTATCAGAGCTCGGTTTTGCTCTTGTGCTTCCGCGGTTTCAATTGTGCAG
CTTGAGCAACGACGTGAAAGAAGATCACCGAGAAGACGAGGGCGCCCCTT
TCGAACCTCCAAACGCGCAGACAGAATTGTGTCATGGCCTTCGCCGCTGG
CTCCATCCTCACTGTGATCGTGTACACAGACAAATCACACACAGGCGTGC
CTCCCCTTCTTGCCTCCCCTCCTCCCTATTCACCCTATTCATTTTCATTT
TCACCTCTCCCCTGTTGTCTTCTCACGCGTGATCGTTTCTCACTCCTCTC
TTTTCTTCCCCATGTTACTTTCCTCCCTACCTCTCCTTCCTCCTCTTCCT
TCCTCCCTCCCCTCCCTATCCTCCCTTCGTGCCCCTTCCCCTTCTTTTCT
GTTTGAGTAGGCAGAGGAGGTGGCCTTGCAGAAGGAGCAAGAGAAGATTC
TCCGTCGACCACAGACGAAGATATCGCTGTCGCTAAAAAAGAAGGGGCCC
TTGTTCTAGCCGCTGTCACCGCGAGCGCAAGTGGGGAGGGAAGCAACAAA
AGCAAAGCGCGGGAGTGGAGGAAGTAGACAGGGTCTAGCTGCGATCCACA
CGACGACCGCCCTGATGATAGCAGCGAGTTCTTGCGTGTAAAAAGGAAAG
GGCGGGTGGAGGAGGAGGGACATGATAGCGGAGGTACACGAGAAGTAGGA
GGATTTAGAGGAACAGAGCTGAGATTGCAAAAAAATGTCCGTTTGTG
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protein sequence of NO20G01350.1

>NO20G01350.1-protein ID=NO20G01350.1-protein|Name=NO20G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MSRSRSRSSERERGGSTSGMRRRRDDDRDRGRDRNHKRREDSGSRSRERD
RDGRKKHQHRDKERGKDKKKYSSRRDGSGGGGSGSGKRRRRSPSSSSSFS
SLSPSPLRSKTQTGGRAHPKPPSTTASTSAMLYSRASLKEQRIVDEEVIR
RFDDRIKELLEEKVSVYCESSEFKTFLDEMKKRKREEMLSKIDQDIRAER
EAMLALEREKAEAAAEEQRKLDEVLEENRRKVEEQRRLEMEEKARQDEQK
LMQIQRRQQQEEEAERRRVVSVGREGG*
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Synonyms
Publications