NO20G01350, NO20G01350 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO20G01350
Unique Name	NO20G01350
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	5697
Alignment location	chr20:402161..407857 -

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr20	genome	chr20:402161..407857 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR033371	ARGLU1

Homology

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BLAST of NO20G01350 vs. NCBI_GenBank
Match: EWM22075.1 (hypothetical protein Naga_100039g28 [Nannochloropsis gaditana])

HSP 1 Score: 110.2 bits (274), Expect = 1.100e-20
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 0

Query:  134 SRASLKEQRIVDEEVIRRFDDRIKELLEEKVSVYCESSEFKTFLDEMKKRKREEMLSKIDQDIRAEREAMLALERE 210
            SR S  EQRI+DEEVIRRFD RIKE LEEKVSVYCESSEF+  L++MKKRKREEML++IDQDIRAEREA+L LER+
Sbjct:  121 SRPSPLEQRILDEEVIRRFDSRIKEQLEEKVSVYCESSEFQKLLEDMKKRKREEMLNRIDQDIRAEREAVLDLERK 196

The following BLAST results are available for this feature:

BLAST of NO20G01350 vs. NCBI_GenBank

BLAST of NO20G01350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22075.1	1.100e-20	78.95	hypothetical protein Naga_100039g28 [Nannochlorops...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL023	nonsL023	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL021	nonsL021	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR020	ncniR020	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR067	ngnoR067	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK002671	NSK002671	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO20G01350.1	NO20G01350.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594687	gene_6350	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100039g28	gene8339	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO20G01350.1	NO20G01350.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO20G01350 ID=NO20G01350|Name=NO20G01350|organism=Nannochloropsis oceanica|type=gene|length=5697bp
ATCGCAGCCGAAGAAACATTTTGGCCTTTCTTTTCTTCATTCATTTCGTA
TTGTTTCGGCCGTCTTCTCTTTCTTATTATATCCCCATCTATCGTTTTCT
GTATCTCCGGACTCTATTTCCATTCGTTACACTCTACAAAGGAATCGCCT
CCCTCCATGCCTCCCTTCCTCCCTCCCTCTCCCCCTACTCAAAATACTTC
CGGCGCAATGCCCTCAACCTGATCTTCCCTTTCTTCCCTCCACTTCCTCC
TTTCGTCGTTGCACTCCCATCAGCACCACCATCAGCAGTATCGGTGGCAC
CTAAAAAGTCAAAAGCCTTTTTAACATTCTCCAAGTCTTCAGCCGACATC
ATGCTCATCCTCAACTGAAACCCCTCCGCCCCTGCCATCCCCTCCAACAC
CCTCTTTACCACCTCCCTCCTCCCCTCCATCCCTCCCCCCTCCCCTTCCT
TACACAGTTCTCTGGCTAACACTGCGTATATCTCACTAATTGTGTCCTCG
CTTGTGACTCTTTTGATGACTTTTGAGAAGGTTTGGGGACGGAATGAGGA
GAGGTAAGCGGCGAGACGAGCGGTGGAACCTGAATCTCCGCCCTTTTTCA
AGGTTCGCCAGTGTGTCTCGAGCTCGGAGATGCTTGTTGGGGGGGGGGGA
TTTTCTTCTTTCCGGAAGAAAGGGGGGAGGAAACGGAGGAGAAAACAGAG
GAGGAGGAGGAGGAGGGAAAAATGGAGGAATGACTGTTTTTGAGTGGGGT
TATGGGTAGCTGCTGTCCTTGACGACGTCGCTCTTGTTGTTCATCTTGCT
CTTGTCTTCTCCCTTCCTCCACCACGGCTATTTTTCGAAAAGCTTCCACA
GGTGGGACTCGAGGTCGCGTCGTCACTTCTTGCATCATGGAAGAGGTCCC
TCCCTCCTTCCCTCGTTCTTCACCGGCAATCTCCGCCCGGTGCGCTGCCA
AAATTGTTTTGAGTTCATTAGGGGGAGGATGCGGCGAGGAGGAGGGAGGG
ATGGATGACGCGCCTACCACTCCAGCAGCGCCCATATGTCCTACTTGTTT
AAAAAGCTGTTGATACTGACTCAACAGCGACTTAGCCAACCGTCTCTCCT
TTTGGGCCTCCGCGTTGCCGCTTTCTACCGCAAGAATCATGTTCATCTCC
TTCACAGCATTTTCCAATCCCTCCTTCGCCCTTCCCACCATCCCTTGTTT
CCGAACAACACACATGCTCTCCGCTTCCTTCTCTCTCGCTCTCAATACCT
CTTCCCTCGCCTCCTTCCCTGCCTCCTTCTTCTTCCACAATGCCTCCACT
GTTGCCAAGCATTCTGCTCCTCCTCTACACAAAGCCTTTCCCTTCCTGAA
TCGGGCTTTAATATTTCCCGGGTCCTGGTCGAGGACGAATGAGGCATCTC
GGAAAGCCTCCTCCCATCGTTCGAGTTTGAGGTGGGCCTGTGCGCGATTA
TTGTACAGGATGAGGGAAAGCTTAGTGGTGGTGGTGGCGGTGCTGCTGCG
GCTGGTATTGTGGTTGCTTTCGCTGAAATAAGTGGTGGTGGAACTGTTGC
TGCTGTCGCTGTTGGCGGCATCGGCGGCAATCGCTTCAGTATAGTGCTTT
ATGGCGGAATGGTAGTTTTTTTCTAACAAAGCATTGTTCCCTTGTTCTTT
CAAAATATGAGCTCGGTCGTTTCTGTTGCTGCTGTGGTTTTTGCTGCTAC
TACTTTTGGCACTGCTGCCATCCATCTTACTCGACCCCTGACGCTGCTGC
TGCTGCTGCCACTGTGCTTTCGTCACGTATTTTCCGTCTCTTACTTCCTC
GATGGGAAGACGTTGGAAGCCCGGGCGTACAGGAGGAGGCCAAATATAAC
CGTCTTTCCCTCCTTCCTTCCCTCCCTCCGTCCCCGCTGCTCCTACTGCT
GCCACCGCTACTGCCGCTGATTGTGGCCCAGGTGTGTTGGACGAGTCAGG
GTTGTCCCTCTCCTCGCCTGCATCTTGCTCTTCAACCGCTACCTTTTCCT
CCTTTTGCTCCACTAGCGAAATACCGGCAGAAACCGCGGGTATGTCGTCG
ACAAGAGAGTCGGCAGCAGGAGGAGGGGGAGGAAGATGAGGAGGAGGAGA
GGAACTGCTCGGTGGTGGCATTGCGGGCTCCCCCCCTCCCACTCTTTCTC
CTTCCTCTTTCTTCCCGTCCTCCTTATCCATCTTCGCCAACAGCGCCATT
GCTTCCTTTTCCTCCATTCCAGCCTTTCCACTTCCTCCTTTCATTTCTCC
CGGAGCAGCAGCAGCCGCACAAACCACCAAGACCTGCCTCAGATCCCCTC
GCGCTTTATCTCGTTTTTCCATTTTGTGCCTTATCATCCCTCGTCGAAGC
CAAGCCTTGGCATATGAGGGCTCTCTATTTATGGCCATTGTGCAGTCCGC
TTCAGCTTGGTCAAAAATTCCCTGTTTCAGCATGGCCAAGGCCCGATTCG
CACACACCACAGCATTTTCAGGAGCGTGGCCGAGTGACAGAGTGTAAGCG
GCGCGGGCTTCGGAATATTCCCCCTGCTTGAGTAGCTTGTTGCCGTCTTC
CTTCTTTTGGGCGGCGAGGAGGGGACGGAGCGAGAGAGGGGTGTGGCGGA
GGCATTCGCTCATGTCCCTTATTTCCTTTTCCGCAGCTTGGACCTTTTCG
TCCTCGTCCTCGTCCTCACATTCCTCCTCCCTCTCTTTTACTGCCATGAT
TGCTGTTGCTGATGCTTTGGTTCCTGCTGGTGCTGCTGTTGTTGCCGTTG
CAATCGGTAGTGCTGTAGCACTGCCCGAATTCGTCGTCGTCATCGTAATA
ATCGTCCTGGCAGACCGGGAAGGGGGACTACTCGACTCTACCACCACCAC
TCCTGGTTCATTCCTCATTCTATTACTCCCAACAGCAACACCACGCTTCA
TCCCCATCGCGGCATCTTTTCTTTCCATCTCATCACTCCACTCCTGCAAA
ATCTCTTCCTCCTTGGCGACCTCTACCGGGCACGGCTGCGCCCGCAACGC
CTTCACTTGGGCCTGGACTCGGGTAGGGGACAATAGCACTAGCCTGTCCA
ATGTTTCCCGTTCTAAATCGGGGTAGACACCATCTTGTCTGCCCTGGAGC
CGACGGAGGATGCAACGGATAACCTTGGGATCGTCGCAGTTTTGGATAAA
ATCGAAGTCGAGCAGGTCGGTAGTAATGGGGATGGGGGAACGCTCATCGG
CTGGGTACGGGGCCAACAGCAGTTCAGAAACAATATCCATGGCGTCCATT
TGCTGCTGTTGCTCGGTGCCGAGATGAGGAGACTAGGAGACTGCCTGTAG
AAAATGTACGTGTGTACTGGAGGAGTGTGAAAAGGGGGGGAGCATAGGAG
GCAGTGAAGCAAGCTTTCGGGTGAGGGGTTATTCTCGAAAGTGGCACGTT
TGAAGCGCTGTGGAAATGCGGAGGACGAGGAGGGGACGACTGCGTGCCAC
GTGGGTGTGTTGTGGGGGCGTGAAAGCGGCATAAATAGCGCTTTGGCCTG
GCTCAATTTTGGGTGTTGTTTCAGAAAGTTCCTTCAAGAAGCAACGCTCT
TATTTCATGTCCTCGTATTCTACTTTACAATACTTTAAACGTCCTCCCAC
CAACCACGCTTTCATCACAGCAACAATAACAAGCAAGGCCTCTTAACGTG
CCAAGCTATGTCGCGCAGCCGCTCGCGTTCTTCCGAGAGgtaagagacgc
tgatgaatatgcttgctgtttgctttctggacatcccacgagacgcgctc
ctcgcaccccacccacccacactccacatttacgcacaataaacgacaca
gAGAAAGAGGTGGCAGTACCAGCGGCATGCGGCGACGACGGGACGATGAC
CGTGACCGGGGGAGGGACCGAAATCACAAGAGGAGGGAGGACAGCGGGAG
CCGCAGCAGGGAGCGCGATCGCGATGGACGCAAGAAGCACCAGCATAGAG
ACAAGGAACGTGGAAAGGACAAGAAGAAGTATTCGTCGCGTCGCGATGGT
TCTGGTGGAGGAGGAAGCGGCAGTGGCAAGCGTCGTCGGCGGTCACCCTC
CTCATCCTCTTCCTTCTCGTCCTTGTCCCCTTCTCCCCTACGCAGCAAGA
CCCAAACCGGAGGGAGAGCACATCCCAAACCTCCTTCCACCACCGCATCC
ACAAGTGCTATGCTATATTCCCGTGCTTCTTTAAAAGAGCAACGGATCGT
TGATGAGGAGGTGATTCGTCGGTTTGATGATCGAATCAAGGAGTTATTAG
AAGAAAAAGTTTCTGTGTATTGCGAGTCCAGCGAGTTCAAAACCTTCCTC
GACGAAATGAAGAAACGGAAACGGGAAGAGATGCTGAGTAAAATTGACCA
GGACATTCGTGCAGAGCGTGAGGCAATGCTGGCGTTAGAAAGGGAGAAAG
CCGAAGCAGCGGCGGAGGAGCAGCGGAAGTTGGATGAGGTACTGGAGGAG
AATCGACGGAAGGTGGAAGAGCAGCGACGATTGGAGATGGAGGAAAAAGC
AAGGCAGGACGAACAGAAACTGATGCAGATTCAGCGACGGCAACAACAGG
AGGAGGAGGCAGAACGGCGGAGGGTGGTGAGTGTTGGAAGGGAAGGGGGG
TAGAGGTTTGGTGACTTGCGCCATTAATTCTGAGTGAAATTGCGAAGAAG
ACAAGCTGCCAATGCAGGCAGCACTTTGGGCCGCCTGCTTTGGAGGTGGA
CTATTCTGTCTTATTCCTTTCAAATGTATGAGTGTCTGGGGAGCACTTGT
CCCCCCTTTTCCTGTCTTTCCTCCTCCTCCTGCCCCCCCTTCCCCCCTCC
TTCTATTTCTTTTCGCCTCGGAGGTAAGCGGCACCGAGCAACAGCAGAGC
AGCAACAGTAGTAGCAGCATCAAGAAGGGGAAGTAGATTCCAGACCAGCA
TCCATAAGGGGCATGCCTCGAGGAGATACCGTCTCAGGTGTCTCAGGGCG
CTATCAGAGCTCGGTTTTGCTCTTGTGCTTCCGCGGTTTCAATTGTGCAG
CTTGAGCAACGACGTGAAAGAAGATCACCGAGAAGACGAGGGCGCCCCTT
TCGAACCTCCAAACGCGCAGACAGAATTGTGTCATGGCCTTCGCCGCTGG
CTCCATCCTCACTGTGATCGTGTACACAGACAAATCACACACAGGCGTGC
CTCCCCTTCTTGCCTCCCCTCCTCCCTATTCACCCTATTCATTTTCATTT
TCACCTCTCCCCTGTTGTCTTCTCACGCGTGATCGTTTCTCACTCCTCTC
TTTTCTTCCCCATGTTACTTTCCTCCCTACCTCTCCTTCCTCCTCTTCCT
TCCTCCCTCCCCTCCCTATCCTCCCTTCGTGCCCCTTCCCCTTCTTTTCT
GTTTGAGTAGGCAGAGGAGGTGGCCTTGCAGAAGGAGCAAGAGAAGATTC
TCCGTCGACCACAGACGAAGATATCGCTGTCGCTAAAAAAGAAGGGGCCC
TTGTTCTAGCCGCTGTCACCGCGAGCGCAAGTGGGGAGGGAAGCAACAAA
AGCAAAGCGCGGGAGTGGAGGAAGTAGACAGGGTCTAGCTGCGATCCACA
CGACGACCGCCCTGATGATAGCAGCGAGTTCTTGCGTGTAAAAAGGAAAG
GGCGGGTGGAGGAGGAGGGACATGATAGCGGAGGTACACGAGAAGTAGGA
GGATTTAGAGGAACAGAGCTGAGATTGCAAAAAAATGTCCGTTTGTG

protein sequence of NO20G01350.1

>NO20G01350.1-protein ID=NO20G01350.1-protein|Name=NO20G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MSRSRSRSSERERGGSTSGMRRRRDDDRDRGRDRNHKRREDSGSRSRERD
RDGRKKHQHRDKERGKDKKKYSSRRDGSGGGGSGSGKRRRRSPSSSSSFS
SLSPSPLRSKTQTGGRAHPKPPSTTASTSAMLYSRASLKEQRIVDEEVIR
RFDDRIKELLEEKVSVYCESSEFKTFLDEMKKRKREEMLSKIDQDIRAER
EAMLALEREKAEAAAEEQRKLDEVLEENRRKVEEQRRLEMEEKARQDEQK
LMQIQRRQQQEEEAERRRVVSVGREGG*

Synonyms

Publications