Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr20 genome chr20:402161..407857 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G01350.1 vs.
Match: EWM22075.1 (hypothetical protein Naga_100039g28 [Nannochloropsis gaditana])
HSP 1 Score: 213.4 bits (542), Expect = 9.000e-52
Identity = 174/275 (63.27%), Postives = 195/275 (70.91%), Query Frame = 0
Query: 1 MSRSRSRSSERERGGSTSGMRRRRDDDRDRGRDRNHKRREDSGSRSRERDRDGRKKHQHRDKERGKDKKKYSSRRDGSGGGGSGSGKRRRRSPS---SSSSFSSLSPSPLRSKTQTGGRAHPKPPSTTASTSAMLYSRASLKEQRIVDEEVIRRFDDRIKELLEEKVSVYCESSEFKTFLDEMKKRKREEMLSKIDQDIRAEREAMLALEREKAEAAAEEQRKLDEVLEENRRKVEEQRRLEMEEKARQDEQKLMQIQRRQQQEEEAERRRVVSV 273
M RSRSRS R G RRRR + DR DRN KRRE S S R R+ DGR+KH HRD R K K ++RRDGS RRR+ PS SSSS SSLSP K GG H KP ST + SR S EQRI+DEEVIRRFD RIKE LEEKVSVYCESSEF+ L++MKKRKREEML++IDQDIRAEREA+L LER++AEA AEE+RKL +VLEENRRKVEEQRRLEMEEK RQDEQKL++IQRRQQ EEE E+RRV V
Sbjct: 1 MPRSRSRSLSRGSG------RRRRGREEDRDYDRNRKRRERSRSSGRHREGDGRRKHSHRDDLR---KGKKAARRDGSYDDDEKFSGRRRQRPSPSLSSSSSSSLSPPRGTDKASKGG-LHHKPQSTHFT------SRPSPLEQRILDEEVIRRFDSRIKEQLEEKVSVYCESSEFQKLLEDMKKRKREEMLNRIDQDIRAEREAVLDLERKRAEAEAEEKRKLAQVLEENRRKVEEQRRLEMEEKERQDEQKLLEIQRRQQMEEEEEKRRVRGV 259
The following BLAST results are available for this feature:
BLAST of NO20G01350.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 Expect = 9.00e-52 / Id = 63.27 Sequence EWM22075.1
Match Name E-value Identity Description
EWM22075.1 9.000e-52 63.27 hypothetical protein Naga_100039g28 [Nannochlorops... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO20G01350.1 ID=NO20G01350.1|Name=NO20G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=5585bp back to top protein sequence of NO20G01350.1
>NO20G01350.1-protein ID=NO20G01350.1-protein|Name=NO20G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp back to top mRNA from alignment at chr20:402161..407857-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01350.1 ID=NO20G01350.1|Name=NO20G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=5697bp|location=Sequence derived from alignment at chr20:402161..407857- (Nannochloropsis oceanica)ATGTCGCGCAGCCGCTCGCGTTCTTCCGAGAG GTAAGAGACGC
TGATGAATATGCTTGCTGTTTGCTTTCTGGACATCCCACGAGACGCGCTC
CTCGCACCCCACCCACCCACACTCCACATTTACGCACAATAAACGACACA
GAGAAAGAGGTGGCAGTACCAGCGGCATGCGGCGACGACGGGACGATGAC
CGTGACCGGGGGAGGGACCGAAATCACAAGAGGAGGGAGGACAGCGGGAG
CCGCAGCAGGGAGCGCGATCGCGATGGACGCAAGAAGCACCAGCATAGAG
ACAAGGAACGTGGAAAGGACAAGAAGAAGTATTCGTCGCGTCGCGATGGT
TCTGGTGGAGGAGGAAGCGGCAGTGGCAAGCGTCGTCGGCGGTCACCCTC
CTCATCCTCTTCCTTCTCGTCCTTGTCCCCTTCTCCCCTACGCAGCAAGA
CCCAAACCGGAGGGAGAGCACATCCCAAACCTCCTTCCACCACCGCATCC
ACAAGTGCTATGCTATATTCCCGTGCTTCTTTAAAAGAGCAACGGATCGT
TGATGAGGAGGTGATTCGTCGGTTTGATGATCGAATCAAGGAGTTATTAG
AAGAAAAAGTTTCTGTGTATTGCGAGTCCAGCGAGTTCAAAACCTTCCTC
GACGAAATGAAGAAACGGAAACGGGAAGAGATGCTGAGTAAAATTGACCA
GGACATTCGTGCAGAGCGTGAGGCAATGCTGGCGTTAGAAAGGGAGAAAG
CCGAAGCAGCGGCGGAGGAGCAGCGGAAGTTGGATGAGGTACTGGAGGAG
AATCGACGGAAGGTGGAAGAGCAGCGACGATTGGAGATGGAGGAAAAAGC
AAGGCAGGACGAACAGAAACTGATGCAGATTCAGCGACGGCAACAACAGG
AGGAGGAGGCAGAACGGCGGAGGGTGGTGAGTGTTGGAAGGGAAGGGGGG
TAG back to top Coding sequence (CDS) from alignment at chr20:402161..407857-
>NO20G01350.1 ID=NO20G01350.1|Name=NO20G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at chr20:402161..407857- (Nannochloropsis oceanica) back to top