NO20G01330, NO20G01330 (gene) Nannochloropsis oceanica

Overview
NameNO20G01330
Unique NameNO20G01330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1223
Alignment locationchr20:398181..399403 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:398181..399403 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO20G01330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002667NSK002667Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01330.1NO20G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594679gene_6348Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01330.1NO20G01330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01330 ID=NO20G01330|Name=NO20G01330|organism=Nannochloropsis oceanica|type=gene|length=1223bp
GGACGACATATCGGAGTTTTGAAAAAAAGTCGAAAGGAGTTCTGTGTGCC
CTAGTGCAACCTCCAGACATGACGAGGGCGCATGCCTACACCACAGACAC
TGAGGACGCGAATAGGACCTCTGCTATTTACCACCAAATTCTCCAACAAC
TGGCGCAGGTAAGCAGCCAAGCAAAAAACTGACCTCCTGCCTTACTGCCT
ACCGCAACGCTTCACTGACGAAGCACGCAGCAAAAAGCAGTCCGAAGTGC
CCTGCGTCCCCCTGACCGGAAACTCGGCAGAGCTGCAGCGAGCATTTAAT
CTCGCCGCTACCGCAAGACCTTGCTTTTCTTCCACTCTTTTCCCTCTGCG
CTGCTGATTAACAAAGTATCAACCCTTGCCACTCCCGCAAGCCAGGACCG
TAATGATGATGATGATGATGATGATGGCACCACGTGCCCGTGCCCGCCTC
CACTGGAAAGACGCTTTTCAAAGGGAGGATGTCCGGAGAATATGGAGgta
agtacatatgtgtgggaactctgcgggtgtgctgccatgcgtcctttcca
cctgggcttaccatctctccgtcccttcccttcacacactgggtagcata
cccatcgacaaaatacgcacgtctcatcgcctttccatccttcccccctt
tcattcatcccctttctctttcagGTACGGCGCCATGATCATCGTTACGG
GCTTTGTGGGAAAGCAGTTAGTCTGGTATGTCGCCCAAAGCAACATAAAG
GAAATCCATGAAAAGCAGCACAAGGAAGgtaaaacgatctatgacatccc
ctctttgactaagtttcattacctcttgtcgttcccgcaaataccatttc
ctcatgactctcctcttccgtccatcctttcctcctttcctcctttcctc
ctcttctccttccagCATCCGAAGCTCTTGAGAAAGCTTACGCAGATGGC
CGTCGTCTAGCCGCCATGAAACGCGCACGAATCCTGGCCGAAATCGCAGA
GGTGGAACAGGCGAAGAGCAAGCAAAAAAAAAGCAGCAGCTAGAAAGACA
TGTGAGGGCAAAGTGAGGAAAAAGACGAAATCAAAATTGTGAAATCGGAA
AATAATATTCTCTTTGCGTGGGCTCGTTATAAGACTGACAAATGTACAAA
GTTAGAGACAATAATGCCAGTAAAAGAGCGCACACAATTAAATTGACGAC
TAATTCACCAAGTAGGAGGGGAT
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protein sequence of NO20G01330.1

>NO20G01330.1-protein ID=NO20G01330.1-protein|Name=NO20G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MMMMMMMMAPRARARLHWKDAFQREDVRRIWRYGAMIIVTGFVGKQLVWY
VAQSNIKEIHEKQHKEASEALEKAYADGRRLAAMKRARILAEIAEVEQAK
SKQKKSSS*
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Synonyms
Publications