NO20G01330.1, NO20G01330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01330.1
Unique NameNO20G01330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length909
Alignment locationchr20:398181..399403 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:398181..399403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO20G01330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01330NO20G01330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01330.1NO20G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01330.1.cds1NO20G01330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01330.1.cds2NO20G01330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01330.1.cds3NO20G01330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01330.1 ID=NO20G01330.1|Name=NO20G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=909bp
GGACGACATATCGGAGTTTTGAAAAAAAGTCGAAAGGAGTTCTGTGTGCC
CTAGTGCAACCTCCAGACATGACGAGGGCGCATGCCTACACCACAGACAC
TGAGGACGCGAATAGGACCTCTGCTATTTACCACCAAATTCTCCAACAAC
TGGCGCAGGTAAGCAGCCAAGCAAAAAACTGACCTCCTGCCTTACTGCCT
ACCGCAACGCTTCACTGACGAAGCACGCAGCAAAAAGCAGTCCGAAGTGC
CCTGCGTCCCCCTGACCGGAAACTCGGCAGAGCTGCAGCGAGCATTTAAT
CTCGCCGCTACCGCAAGACCTTGCTTTTCTTCCACTCTTTTCCCTCTGCG
CTGCTGATTAACAAAGTATCAACCCTTGCCACTCCCGCAAGCCAGGACCG
TAATGATGATGATGATGATGATGATGGCACCACGTGCCCGTGCCCGCCTC
CACTGGAAAGACGCTTTTCAAAGGGAGGATGTCCGGAGAATATGGAGGTA
CGGCGCCATGATCATCGTTACGGGCTTTGTGGGAAAGCAGTTAGTCTGGT
ATGTCGCCCAAAGCAACATAAAGGAAATCCATGAAAAGCAGCACAAGGAA
GCATCCGAAGCTCTTGAGAAAGCTTACGCAGATGGCCGTCGTCTAGCCGC
CATGAAACGCGCACGAATCCTGGCCGAAATCGCAGAGGTGGAACAGGCGA
AGAGCAAGCAAAAAAAAAGCAGCAGCTAGAAAGACATGTGAGGGCAAAGT
GAGGAAAAAGACGAAATCAAAATTGTGAAATCGGAAAATAATATTCTCTT
TGCGTGGGCTCGTTATAAGACTGACAAATGTACAAAGTTAGAGACAATAA
TGCCAGTAAAAGAGCGCACACAATTAAATTGACGACTAATTCACCAAGTA
GGAGGGGAT
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protein sequence of NO20G01330.1

>NO20G01330.1-protein ID=NO20G01330.1-protein|Name=NO20G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MMMMMMMMAPRARARLHWKDAFQREDVRRIWRYGAMIIVTGFVGKQLVWY
VAQSNIKEIHEKQHKEASEALEKAYADGRRLAAMKRARILAEIAEVEQAK
SKQKKSSS*
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mRNA from alignment at chr20:398181..399403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01330.1 ID=NO20G01330.1|Name=NO20G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp|location=Sequence derived from alignment at chr20:398181..399403- (Nannochloropsis oceanica)
GGACGACATATCGGAGTTTTGAAAAAAAGTCGAAAGGAGTTCTGTGTGCC
CTAGTGCAACCTCCAGACATGACGAGGGCGCATGCCTACACCACAGACAC
TGAGGACGCGAATAGGACCTCTGCTATTTACCACCAAATTCTCCAACAAC
TGGCGCAGGTAAGCAGCCAAGCAAAAAACTGACCTCCTGCCTTACTGCCT
ACCGCAACGCTTCACTGACGAAGCACGCAGCAAAAAGCAGTCCGAAGTGC
CCTGCGTCCCCCTGACCGGAAACTCGGCAGAGCTGCAGCGAGCATTTAAT
CTCGCCGCTACCGCAAGACCTTGCTTTTCTTCCACTCTTTTCCCTCTGCG
CTGCTGATTAACAAAGTATCAACCCTTGCCACTCCCGCAAGCCAGGACCG
TAATGATGATGATGATGATGATGATGGCACCACGTGCCCGTGCCCGCCTC
CACTGGAAAGACGCTTTTCAAAGGGAGGATGTCCGGAGAATATGGAGGTA
AGTACATATGTGTGGGAACTCTGCGGGTGTGCTGCCATGCGTCCTTTCCA
CCTGGGCTTACCATCTCTCCGTCCCTTCCCTTCACACACTGGGTAGCATA
CCCATCGACAAAATACGCACGTCTCATCGCCTTTCCATCCTTCCCCCCTT
TCATTCATCCCCTTTCTCTTTCAGGTACGGCGCCATGATCATCGTTACGG
GCTTTGTGGGAAAGCAGTTAGTCTGGTATGTCGCCCAAAGCAACATAAAG
GAAATCCATGAAAAGCAGCACAAGGAAGGTAAAACGATCTATGACATCCC
CTCTTTGACTAAGTTTCATTACCTCTTGTCGTTCCCGCAAATACCATTTC
CTCATGACTCTCCTCTTCCGTCCATCCTTTCCTCCTTTCCTCCTTTCCTC
CTCTTCTCCTTCCAGCATCCGAAGCTCTTGAGAAAGCTTACGCAGATGGC
CGTCGTCTAGCCGCCATGAAACGCGCACGAATCCTGGCCGAAATCGCAGA
GGTGGAACAGGCGAAGAGCAAGCAAAAAAAAAGCAGCAGCTAGAAAGACA
TGTGAGGGCAAAGTGAGGAAAAAGACGAAATCAAAATTGTGAAATCGGAA
AATAATATTCTCTTTGCGTGGGCTCGTTATAAGACTGACAAATGTACAAA
GTTAGAGACAATAATGCCAGTAAAAGAGCGCACACAATTAAATTGACGAC
TAATTCACCAAGTAGGAGGGGAT
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Coding sequence (CDS) from alignment at chr20:398181..399403-

>NO20G01330.1 ID=NO20G01330.1|Name=NO20G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at chr20:398181..399403- (Nannochloropsis oceanica)
ATGATGATGATGATGATGATGATGGCACCACGTGCCCGTGCCCGCCTCCA
CTGGAAAGACGCTTTTCAAAGGGAGGATGTCCGGAGAATATGGAGGTACG
GCGCCATGATCATCGTTACGGGCTTTGTGGGAAAGCAGTTAGTCTGGTAT
GTCGCCCAAAGCAACATAAAGGAAATCCATGAAAAGCAGCACAAGGAAGC
ATCCGAAGCTCTTGAGAAAGCTTACGCAGATGGCCGTCGTCTAGCCGCCA
TGAAACGCGCACGAATCCTGGCCGAAATCGCAGAGGTGGAACAGGCGAAG
AGCAAGCAAAAAAAAAGCAGCAGCTAG
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Synonyms
Publications