NO20G01310, NO20G01310 (gene) Nannochloropsis oceanica

Overview
NameNO20G01310
Unique NameNO20G01310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1715
Alignment locationchr20:391159..392873 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:391159..392873 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR000467G_patch_dom
Homology
[Close]
BLAST of NO20G01310 vs. NCBI_GenBank
Match: CBN74170.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 92.8 bits (229), Expect = 2.000e-15
Identity = 84/193 (43.52%), Postives = 112/193 (58.03%), Query Frame = 0 
Query:    1 MELVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGIKNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFESALKSLKAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTVLSYEDMFKATGGKRMGMRARATQKAKWERTE 194
            ++L+GKR +  L S  N  +G+  S +AK ++ K GW+EG+GLGK E G   YV+VK++++++GLG E+  +NK  + W+FN+F+SAL ++                                            XXXXXXXXXXXXXXXXXXXXXXXX     Y+ MFKATGG RMGMRARA+Q  K  RTE
Sbjct:    3 VQLLGKRELKRLSSVANDGAGAGYSGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFDSALANM-----------------------------------------GGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMYDKMFKATGGARMGMRARASQNGKLSRTE 154
[Close]
BLAST of NO20G01310 vs. NCBI_GenBank
Match: GAY06412.1 (Hypothetical protein PINS_014217 [Pythium insidiosum])

HSP 1 Score: 92.8 bits (229), Expect = 2.000e-15
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 0 
Query:    3 LVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGIKNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFESALKSLK 93
            LVGK+ M  LG+ +N  + S MS +A+K + K GWSEGKGLGKNE G+  YV+VK+REES G+G+E     + Q  WW+N ++     +K
Sbjct:   16 LVGKKYMKQLGAMVNENAASAMSAFARKQMEKMGWSEGKGLGKNEQGMATYVRVKKREESMGIGVEAVKVQEQQNQWWYNVYDKLADKIK 105
[Close]
BLAST of NO20G01310 vs. NCBI_GenBank
Match: OWY93068.1 (hypothetical protein PHMEG_00037669 [Phytophthora megakarya])

HSP 1 Score: 87.4 bits (215), Expect = 8.400e-14
Identity = 38/85 (44.71%), Postives = 60/85 (70.59%), Query Frame = 0 
Query:    1 MELVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGIKNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFE 86
            + LVGK+ M+ LG   N  + +++SD+A++ + K GWS GKGLGKNE G+K++VKVK+REE  G+G E+ +  +    WW+N ++
Sbjct:    8 LPLVGKKLMSKLGGMANESAAAEVSDFARRQMEKMGWSAGKGLGKNEQGVKSHVKVKRREELQGVGAEKQEAKEQANQWWYNVYD 92
[Close]
BLAST of NO20G01310 vs. NCBI_GenBank
Match: XP_008897775.1 (hypothetical protein PPTG_05806 [Phytophthora parasitica INRA-310] >ETI32776.1 hypothetical protein F443_20478 [Phytophthora parasitica P1569] >ETK73116.1 hypothetical protein L915_19916 [Phytophthora parasitica] >ETL26553.1 hypothetical protein L916_19797 [Phytophthora parasitica] >ETL79780.1 hypothetical protein L917_19655 [Phytophthora parasitica] >ETM33018.1 hypothetical protein L914_19697 [Phytophthora parasitica] >ETN16635.1 hypothetical protein PPTG_05806 [Phytophthora parasitica INRA-310] >ETO61514.1 hypothetical protein F444_20490 [Phytophthora parasitica P1976] >ETP30783.1 hypothetical protein F442_20292 [Phytophthora parasitica P10297])

HSP 1 Score: 86.7 bits (213), Expect = 1.400e-13
Identity = 38/85 (44.71%), Postives = 60/85 (70.59%), Query Frame = 0 
Query:    1 MELVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGIKNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFE 86
            + LVGK+ M+ LG   N  + +++SD+A++ + K GWS GKGLGKNE G+K++VKVK+REE  G+G E+ +  +    WW+N ++
Sbjct:   35 LPLVGKKLMSKLGGMANESAAAEVSDFARRQMEKMGWSAGKGLGKNEQGVKSHVKVKRREELQGVGAEKQEVKEQANQWWYNVYD 119
[Close]
BLAST of NO20G01310 vs. NCBI_GenBank
Match: ETP02597.1 (hypothetical protein F441_20360, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 86.7 bits (213), Expect = 1.400e-13
Identity = 38/85 (44.71%), Postives = 60/85 (70.59%), Query Frame = 0 
Query:    1 MELVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGIKNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFE 86
            + LVGK+ M+ LG   N  + +++SD+A++ + K GWS GKGLGKNE G+K++VKVK+REE  G+G E+ +  +    WW+N ++
Sbjct:   52 LPLVGKKLMSKLGGMANESAAAEVSDFARRQMEKMGWSAGKGLGKNEQGVKSHVKVKRREELQGVGAEKQEVKEQANQWWYNVYD 136
[Close]
BLAST of NO20G01310 vs. NCBI_GenBank
Match: KUF74969.1 (G patch domain-containing protein 4 [Phytophthora nicotianae] >KUF92137.1 Mucin protein [Phytophthora nicotianae])

HSP 1 Score: 86.7 bits (213), Expect = 1.400e-13
Identity = 38/85 (44.71%), Postives = 60/85 (70.59%), Query Frame = 0 
Query:    1 MELVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGIKNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFE 86
            + LVGK+ M+ LG   N  + +++SD+A++ + K GWS GKGLGKNE G+K++VKVK+REE  G+G E+ +  +    WW+N ++
Sbjct:    8 LPLVGKKLMSKLGGMANESAAAEVSDFARRQMEKMGWSAGKGLGKNEQGVKSHVKVKRREELQGVGAEKQEVKEQANQWWYNVYD 92
[Close]
BLAST of NO20G01310 vs. NCBI_GenBank
Match: XP_002905145.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY53527.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 86.3 bits (212), Expect = 1.900e-13
Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 0 
Query:    1 MELVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGIKNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFE 86
            + LVGK+ M+ LG   N  + +++SD+A++ + K GWS GKGLGKNE G+K++VKVK+REE  G+G E+    +    WWFN ++
Sbjct:    8 LPLVGKKLMSKLGGMANESAAAEVSDFARRQMEKMGWSAGKGLGKNEQGVKSHVKVKRREELQGVGAEKEAVKEQANQWWFNVYD 92
[Close]
BLAST of NO20G01310 vs. NCBI_GenBank
Match: OQR98721.1 (hypothetical protein ACHHYP_08230 [Achlya hypogyna])

HSP 1 Score: 85.5 bits (210), Expect = 3.200e-13
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0 
Query:    3 LVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGIKNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFE 86
            +VGK+ +A LG   N  + S++S +AKK + K GW+EGKGLGK+E GI  ++KVK+REE+AG+G E     +    WW+N ++
Sbjct:    8 IVGKKFLAQLGGMANESAASEVSSFAKKQMAKMGWTEGKGLGKDEQGIATHIKVKRREENAGVGTETAKTEEQSNQWWYNVYD 90
[Close]
BLAST of NO20G01310 vs. NCBI_GenBank
Match: OQS05250.1 (hypothetical protein THRCLA_02595 [Thraustotheca clavata])

HSP 1 Score: 85.1 bits (209), Expect = 4.200e-13
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 0 
Query:    3 LVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGIKNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFE 86
            +VGK+ +A LG   N  + S++S +AKK + K GW+EGKGLGK E GI  ++KVK+REE+AG+G E     +    WW+N ++
Sbjct:    8 IVGKKFLAQLGGMANESAASEVSSFAKKQMAKMGWTEGKGLGKQEQGIATHIKVKRREENAGVGTEAAKTEEQSNQWWYNVYD 90
[Close]
BLAST of NO20G01310 vs. NCBI_GenBank
Match: XP_008860969.1 (hypothetical protein H310_00109 [Aphanomyces invadans] >ETW09558.1 hypothetical protein H310_00109 [Aphanomyces invadans])

HSP 1 Score: 84.7 bits (208), Expect = 5.400e-13
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 0 
Query:    1 MELVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGIKNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFESALKSL 92
            M LVGK+  A LG   N    S +S +AK+ + K GW+EGKGLGK+E G+  ++KVK+REE+ G+G+E  ++      WW+N + +    +
Sbjct:    6 MPLVGKKFQAKLGGMANEAVASGVSSFAKRQMEKMGWTEGKGLGKDEQGMATHIKVKRREENMGVGVETKEKEDQSNQWWYNVYNNVASKI 96
The following BLAST results are available for this feature:
BLAST of NO20G01310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN74170.12.000e-1543.52conserved unknown protein [Ectocarpus siliculosus][more]
GAY06412.12.000e-1547.78Hypothetical protein PINS_014217 [Pythium insidios... [more]
OWY93068.18.400e-1444.71hypothetical protein PHMEG_00037669 [Phytophthora ... [more]
XP_008897775.11.400e-1344.71hypothetical protein PPTG_05806 [Phytophthora para... [more]
ETP02597.11.400e-1344.71hypothetical protein F441_20360, partial [Phytopht... [more]
KUF74969.11.400e-1344.71G patch domain-containing protein 4 [Phytophthora ... [more]
XP_002905145.11.900e-1345.88conserved hypothetical protein [Phytophthora infes... [more]
OQR98721.13.200e-1345.78hypothetical protein ACHHYP_08230 [Achlya hypogyna... [more]
OQS05250.14.200e-1345.78hypothetical protein THRCLA_02595 [Thraustotheca c... [more]
XP_008860969.15.400e-1340.66hypothetical protein H310_00109 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002662NSK002662Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01310.1NO20G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594664gene_6344Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01310.1NO20G01310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01310 ID=NO20G01310|Name=NO20G01310|organism=Nannochloropsis oceanica|type=gene|length=1715bp
GGAAACACATACCTTGACAGCTGGAAGCAATGGAACTTGTCGGCAAGCGG
GGGATGGCGGACTTGGGTAGCCGGATCAACCATGTCAGTGGCAGCAAGAT
GAGTGATTGGGCAAAAAAGGTGCTGATGAAGCATGGCTGGTCCGAAGGCA
AGGGCTTGGGCAAGAACGAGGACGGCATCAAGAACTACGTCAAGgtagga
aagatgctgtgcgtgtgtctgtgtgtacactgcggggagatgtgtttggc
tgtgtggcttctcctcaattggcccggtatttttgaaaaaccagttcgcc
tcatcacgtggaaaggcaaggactgcgacttgtgattcgtgcgcatatgc
tgcttgcctaaagagattaatcacaggcatggcaccacttccagcaatgt
cgaacattatcaattcacacttttcaccctcagctctttccaattgtgcg
ctgaccaaccatttccctccctcctccctccctccttctcggccctcagG
TAAAACAACGCGAAGAAAGCGCGGGCTTGGGAATCGAAGAACATGATCGA
AACAAGGGACAAGAAAGCTGGTGGTTTAACTCTTTTGAAAGTGCGCTGAA
AAGCCTCAAGGCTGTGGAGAATGATAGCAGTAGCAGCAGTGAGGGGGAGG
AGGAGGAGGATGGAGAGAAGAGAAAGAAGAAAGACAAGGGGAGGAGGAAA
AAGAGGGAAAAAAAGCAAAAGAAGAAAGGAAAGAAGGACAGTAAGAAGGA
AAAGTTGAAGGCGGCTGCAGCTGTGGCAGGAGGAGGAAGAGGAGGGTGGG
GAGGAGGAGAGAGAACCGTGCTGAGCTACGAAGATATGTTCAAGGCCACG
GGGGGAAAGCGAATGGgtaagtttgtatttggtgattgtgaagggaagga
gggagggagggagggagggtgggagggagggataataataggttaaatgg
gtggctgagtcaatgtggtcaatcaggacttacgtctttccctccttccc
gccctccctcccgctctctctcccgcccctcctcccgccctccctccctc
cctatatctcttcaccctttgagctctataaataagctgtttttcatttt
ttttccttataagaagcctgcctccctcccactttcccttttctttcccc
ctcttttcctccctcttccacccacagGTATGCGGGCCCGTGCCACTCAA
AAGGCTAAGTGGGAACGGACAGAGATGGCAACGCTGATCAGCACCCACGA
CCCTCTTTATGTATTGCCAGCAGCAGAAGCAGCATCGTCAACAGCAACAG
TGACAGCGCTCAGAGTAGTGGAGAAGAAGGAGGTGGTGGTGGTGGAGGAG
CGGGAAGGGAAGGATGAAAAGAGGAAGGAGAGGAAGAGGAAGCGGAAGGA
GTGGGGTGCGGCGGTGGATGCGGTGGAGGATGAGGCAAAGGAAAAGGAGG
AGAAAGTTGTGGTGATGGCGAGGAAGAAAAAAGACAAGAAGAAAAAGGCT
GTTCGCAAGGAGGACGATGAGGAGGTAGTGCCACAGGACAAGGGGACGAG
TAAGAGGAGTAGGATGGAGGAGAGGGGCTAGGGGGAGAATTTTGATGGAA
GTAAAAGTGTATGTAAAAAGGCTTGTGCTTAGCCATTTAAAGTATGAAAT
AAAGATTTAAATGAAGGAAAAAAGATAAGCAAGCACTCTTTCGATCTCAT
GGATATTGGAGAGGA
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protein sequence of NO20G01310.1

>NO20G01310.1-protein ID=NO20G01310.1-protein|Name=NO20G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MELVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGI
KNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFESALKSLKAVENDSSS
SSEGEEEEDGEKRKKKDKGRRKKREKKQKKKGKKDSKKEKLKAAAAVAGG
GRGGWGGGERTVLSYEDMFKATGGKRMGMRARATQKAKWERTEMATLIST
HDPLYVLPAAEAASSTATVTALRVVEKKEVVVVEEREGKDEKRKERKRKR
KEWGAAVDAVEDEAKEKEEKVVVMARKKKDKKKKAVRKEDDEEVVPQDKG
TSKRSRMEERG*
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Synonyms
Publications