NO20G01310.1, NO20G01310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01310.1
Unique NameNO20G01310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1099
Alignment locationchr20:391159..392873 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:391159..392873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01310.1 vs.
Match: CBN74170.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 102.8 bits (255), Expect = 1.900e-18
Identity = 73/193 (37.82%), Postives = 108/193 (55.96%), Query Frame = 0 
Query:    1 MELVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGIKNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFESALKSLKAVENDSSSSSEGEEEEDGEKRKKKDKGRRKKREKKQKKKGKKDSKKEKLKAAAAVAGGGRGGWGGGERTVLSYEDMFKATGGKRMGMRARATQKAKWERTE 194
            ++L+GKR +  L S  N  +G+  S +AK ++ K GW+EG+GLGK E G   YV+VK++++++GLG E+  +NK  + W+FN+F+SAL ++                  G+K+KKKDK   K+R+K    +GK ++  E                         Y+ MFKATGG RMGMRARA+Q  K  RTE
Sbjct:    3 VQLLGKRELKRLSSVANDGAGAGYSGFAKGMMAKMGWAEGQGLGKEEQGRSTYVQVKKKDDNSGLGKEKAQQNKVNDQWYFNAFDSALANM-----------------GGKKKKKKDK---KRRDKTADGEGKPEAAAE---------------------ATTMYDKMFKATGGARMGMRARASQNGKLSRTE 154
The following BLAST results are available for this feature:
BLAST of NO20G01310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN74170.11.900e-1837.82conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01310NO20G01310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01310.1NO20G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01310.1.cds1NO20G01310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01310.1.cds2NO20G01310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01310.1.cds3NO20G01310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01310.1 ID=NO20G01310.1|Name=NO20G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1099bp
GGAAACACATACCTTGACAGCTGGAAGCAATGGAACTTGTCGGCAAGCGG
GGGATGGCGGACTTGGGTAGCCGGATCAACCATGTCAGTGGCAGCAAGAT
GAGTGATTGGGCAAAAAAGGTGCTGATGAAGCATGGCTGGTCCGAAGGCA
AGGGCTTGGGCAAGAACGAGGACGGCATCAAGAACTACGTCAAGGTAAAA
CAACGCGAAGAAAGCGCGGGCTTGGGAATCGAAGAACATGATCGAAACAA
GGGACAAGAAAGCTGGTGGTTTAACTCTTTTGAAAGTGCGCTGAAAAGCC
TCAAGGCTGTGGAGAATGATAGCAGTAGCAGCAGTGAGGGGGAGGAGGAG
GAGGATGGAGAGAAGAGAAAGAAGAAAGACAAGGGGAGGAGGAAAAAGAG
GGAAAAAAAGCAAAAGAAGAAAGGAAAGAAGGACAGTAAGAAGGAAAAGT
TGAAGGCGGCTGCAGCTGTGGCAGGAGGAGGAAGAGGAGGGTGGGGAGGA
GGAGAGAGAACCGTGCTGAGCTACGAAGATATGTTCAAGGCCACGGGGGG
AAAGCGAATGGGTATGCGGGCCCGTGCCACTCAAAAGGCTAAGTGGGAAC
GGACAGAGATGGCAACGCTGATCAGCACCCACGACCCTCTTTATGTATTG
CCAGCAGCAGAAGCAGCATCGTCAACAGCAACAGTGACAGCGCTCAGAGT
AGTGGAGAAGAAGGAGGTGGTGGTGGTGGAGGAGCGGGAAGGGAAGGATG
AAAAGAGGAAGGAGAGGAAGAGGAAGCGGAAGGAGTGGGGTGCGGCGGTG
GATGCGGTGGAGGATGAGGCAAAGGAAAAGGAGGAGAAAGTTGTGGTGAT
GGCGAGGAAGAAAAAAGACAAGAAGAAAAAGGCTGTTCGCAAGGAGGACG
ATGAGGAGGTAGTGCCACAGGACAAGGGGACGAGTAAGAGGAGTAGGATG
GAGGAGAGGGGCTAGGGGGAGAATTTTGATGGAAGTAAAAGTGTATGTAA
AAAGGCTTGTGCTTAGCCATTTAAAGTATGAAATAAAGATTTAAATGAAG
GAAAAAAGATAAGCAAGCACTCTTTCGATCTCATGGATATTGGAGAGGA
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protein sequence of NO20G01310.1

>NO20G01310.1-protein ID=NO20G01310.1-protein|Name=NO20G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MELVGKRGMADLGSRINHVSGSKMSDWAKKVLMKHGWSEGKGLGKNEDGI
KNYVKVKQREESAGLGIEEHDRNKGQESWWFNSFESALKSLKAVENDSSS
SSEGEEEEDGEKRKKKDKGRRKKREKKQKKKGKKDSKKEKLKAAAAVAGG
GRGGWGGGERTVLSYEDMFKATGGKRMGMRARATQKAKWERTEMATLIST
HDPLYVLPAAEAASSTATVTALRVVEKKEVVVVEEREGKDEKRKERKRKR
KEWGAAVDAVEDEAKEKEEKVVVMARKKKDKKKKAVRKEDDEEVVPQDKG
TSKRSRMEERG*
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mRNA from alignment at chr20:391159..392873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01310.1 ID=NO20G01310.1|Name=NO20G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp|location=Sequence derived from alignment at chr20:391159..392873- (Nannochloropsis oceanica)
GGAAACACATACCTTGACAGCTGGAAGCAATGGAACTTGTCGGCAAGCGG
GGGATGGCGGACTTGGGTAGCCGGATCAACCATGTCAGTGGCAGCAAGAT
GAGTGATTGGGCAAAAAAGGTGCTGATGAAGCATGGCTGGTCCGAAGGCA
AGGGCTTGGGCAAGAACGAGGACGGCATCAAGAACTACGTCAAGGTAGGA
AAGATGCTGTGCGTGTGTCTGTGTGTACACTGCGGGGAGATGTGTTTGGC
TGTGTGGCTTCTCCTCAATTGGCCCGGTATTTTTGAAAAACCAGTTCGCC
TCATCACGTGGAAAGGCAAGGACTGCGACTTGTGATTCGTGCGCATATGC
TGCTTGCCTAAAGAGATTAATCACAGGCATGGCACCACTTCCAGCAATGT
CGAACATTATCAATTCACACTTTTCACCCTCAGCTCTTTCCAATTGTGCG
CTGACCAACCATTTCCCTCCCTCCTCCCTCCCTCCTTCTCGGCCCTCAGG
TAAAACAACGCGAAGAAAGCGCGGGCTTGGGAATCGAAGAACATGATCGA
AACAAGGGACAAGAAAGCTGGTGGTTTAACTCTTTTGAAAGTGCGCTGAA
AAGCCTCAAGGCTGTGGAGAATGATAGCAGTAGCAGCAGTGAGGGGGAGG
AGGAGGAGGATGGAGAGAAGAGAAAGAAGAAAGACAAGGGGAGGAGGAAA
AAGAGGGAAAAAAAGCAAAAGAAGAAAGGAAAGAAGGACAGTAAGAAGGA
AAAGTTGAAGGCGGCTGCAGCTGTGGCAGGAGGAGGAAGAGGAGGGTGGG
GAGGAGGAGAGAGAACCGTGCTGAGCTACGAAGATATGTTCAAGGCCACG
GGGGGAAAGCGAATGGGTAAGTTTGTATTTGGTGATTGTGAAGGGAAGGA
GGGAGGGAGGGAGGGAGGGTGGGAGGGAGGGATAATAATAGGTTAAATGG
GTGGCTGAGTCAATGTGGTCAATCAGGACTTACGTCTTTCCCTCCTTCCC
GCCCTCCCTCCCGCTCTCTCTCCCGCCCCTCCTCCCGCCCTCCCTCCCTC
CCTATATCTCTTCACCCTTTGAGCTCTATAAATAAGCTGTTTTTCATTTT
TTTTCCTTATAAGAAGCCTGCCTCCCTCCCACTTTCCCTTTTCTTTCCCC
CTCTTTTCCTCCCTCTTCCACCCACAGGTATGCGGGCCCGTGCCACTCAA
AAGGCTAAGTGGGAACGGACAGAGATGGCAACGCTGATCAGCACCCACGA
CCCTCTTTATGTATTGCCAGCAGCAGAAGCAGCATCGTCAACAGCAACAG
TGACAGCGCTCAGAGTAGTGGAGAAGAAGGAGGTGGTGGTGGTGGAGGAG
CGGGAAGGGAAGGATGAAAAGAGGAAGGAGAGGAAGAGGAAGCGGAAGGA
GTGGGGTGCGGCGGTGGATGCGGTGGAGGATGAGGCAAAGGAAAAGGAGG
AGAAAGTTGTGGTGATGGCGAGGAAGAAAAAAGACAAGAAGAAAAAGGCT
GTTCGCAAGGAGGACGATGAGGAGGTAGTGCCACAGGACAAGGGGACGAG
TAAGAGGAGTAGGATGGAGGAGAGGGGCTAGGGGGAGAATTTTGATGGAA
GTAAAAGTGTATGTAAAAAGGCTTGTGCTTAGCCATTTAAAGTATGAAAT
AAAGATTTAAATGAAGGAAAAAAGATAAGCAAGCACTCTTTCGATCTCAT
GGATATTGGAGAGGA
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Coding sequence (CDS) from alignment at chr20:391159..392873-

>NO20G01310.1 ID=NO20G01310.1|Name=NO20G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr20:391159..392873- (Nannochloropsis oceanica)
ATGGAACTTGTCGGCAAGCGGGGGATGGCGGACTTGGGTAGCCGGATCAA
CCATGTCAGTGGCAGCAAGATGAGTGATTGGGCAAAAAAGGTGCTGATGA
AGCATGGCTGGTCCGAAGGCAAGGGCTTGGGCAAGAACGAGGACGGCATC
AAGAACTACGTCAAGGTAAAACAACGCGAAGAAAGCGCGGGCTTGGGAAT
CGAAGAACATGATCGAAACAAGGGACAAGAAAGCTGGTGGTTTAACTCTT
TTGAAAGTGCGCTGAAAAGCCTCAAGGCTGTGGAGAATGATAGCAGTAGC
AGCAGTGAGGGGGAGGAGGAGGAGGATGGAGAGAAGAGAAAGAAGAAAGA
CAAGGGGAGGAGGAAAAAGAGGGAAAAAAAGCAAAAGAAGAAAGGAAAGA
AGGACAGTAAGAAGGAAAAGTTGAAGGCGGCTGCAGCTGTGGCAGGAGGA
GGAAGAGGAGGGTGGGGAGGAGGAGAGAGAACCGTGCTGAGCTACGAAGA
TATGTTCAAGGCCACGGGGGGAAAGCGAATGGGTATGCGGGCCCGTGCCA
CTCAAAAGGCTAAGTGGGAACGGACAGAGATGGCAACGCTGATCAGCACC
CACGACCCTCTTTATGTATTGCCAGCAGCAGAAGCAGCATCGTCAACAGC
AACAGTGACAGCGCTCAGAGTAGTGGAGAAGAAGGAGGTGGTGGTGGTGG
AGGAGCGGGAAGGGAAGGATGAAAAGAGGAAGGAGAGGAAGAGGAAGCGG
AAGGAGTGGGGTGCGGCGGTGGATGCGGTGGAGGATGAGGCAAAGGAAAA
GGAGGAGAAAGTTGTGGTGATGGCGAGGAAGAAAAAAGACAAGAAGAAAA
AGGCTGTTCGCAAGGAGGACGATGAGGAGGTAGTGCCACAGGACAAGGGG
ACGAGTAAGAGGAGTAGGATGGAGGAGAGGGGCTAG
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Synonyms
Publications