NO20G01300, NO20G01300 (gene) Nannochloropsis oceanica

Overview
NameNO20G01300
Unique NameNO20G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1464
Alignment locationchr20:389675..391138 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:389675..391138 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007031peroxisome organization
Vocabulary: INTERPRO
TermDefinition
IPR037485PEX22
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO20G01300 vs. NCBI_GenBank
Match: EWM22104.1 (hypothetical protein Naga_100039g38 [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 2.200e-20
Identity = 69/169 (40.83%), Postives = 96/169 (56.80%), Query Frame = 0
Query:    4 SGNSANEGDLVMLFFLTLLLAVLIAGCFRTPSIDMLQXXXXXXXXXXXXXXXXXXXXXXXXVPSRPMSIRAKALQKELGLSYGSPVTITTHGVLLLGEENADSRGSSNSTCASTYSANTSSFVPQALDALRLLLEFADVFLIVHAPEGPVGDAERARVMALLRREGMVR 173
            S +  +E D+V+   +TL++AV +AG  +  +   +                         VP+R +S+RAKALQKEL L  GSPVT+ T G+L         R +++ST ++   A+T  FVPQALDAL LLLEFADVFL+  A EG  G+A + RV+A L RE +VR
Sbjct:    7 STSGQSESDVVIFLLVTLVIAVFVAGYLQKSTTTDI----------PRQRGREITTKKSTNVPTRTISVRAKALQKELALKLGSPVTLATEGILF--------RANNSSTTSTDTPASTYDFVPQALDALTLLLEFADVFLLAEAQEGRSGEATQRRVLASLERERLVR 157          
The following BLAST results are available for this feature:
BLAST of NO20G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22104.12.200e-2040.83hypothetical protein Naga_100039g38 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002661NSK002661Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01300.1NO20G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100039g38gene8334Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01300.1NO20G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01300 ID=NO20G01300|Name=NO20G01300|organism=Nannochloropsis oceanica|type=gene|length=1464bp
GGTTTTGTGGCCTTTGCTTTGTCTTCGTTTGGACTTATTCTGGTCATTAC
ACTACACATCCTCCCGCCTCCTACCCGTCCTTTGCCATTTCCTCTTGATA
CCTGGCCCACTAGAAATGTGCCGGCTGTGGGCTGTCACCCCCCTCGCCCA
CTATTTCGAGCGAGCGCGAGGAGCTAGCAGTATTATGACCCTCCTCACTC
CACCACACGACACATACAGCGCGCCGTCCACACAAGCAAAGCACCATGCC
GAGCAGCGGCAATAGCGCCAATGAAGGTGACTTGGTGATGCTCTTCTTCC
TCACGCTCCTCCTCGCCGTCCTCATTGCCGGATGCTTTCGCACGCCTTCC
ATCGATATGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCGGCAGGG
ACAAGGAAGCAACACTAGGAAAGCAGCCGCCACAGCTGTCCCTTCCAGAC
CCATGTCCATCCGTGCCAAAGCGCTGCAAAAAGAATTAGGATTGAGTTAT
GGCAGCCCCGTCACAATCACGACGCATGGCGTGCTCCTCCTGGGAGAGGA
GAACGCGGACAGCAGAGGCAGCAGCAACAGCACCTGCGCCAGTACATATA
GTGCAAACACCAGTAGCTTCGTTCCCCAGGCTCTCGATGCGTTGCGACTG
TTGCTTGAATTTGCGGATGTCTTCTTAATCGTGCATGCACCAGAGGGTCC
AGTAGGCGATGCGGAAAGGGCACGGGTCATGGCCTTGCTACGGAGGGAGG
GGATGGTAAGGGGGATGGATGCGCAGCAGCAGCAGCAGCAGCAACAGCAG
CAGCAGGAGGCTGTTATGGCACATgtacgcattcaagaagtgaataaagg
gtggatgtgtaaccatcttgcaggcatcgatcgatcttaaagagcctgcc
ctcaccttcccccccctccctccctttctcctcccaaccagAAAATCCTC
TTCCATTCCACTTTTGTGGGAAAACAAGCGATAGCTCGGCAGCTCAAGCC
CCATCTCCATATCGATCACGACCAGCTCGTACTTTCGAACCTCCTCCCCT
TCCTTCCGCGACTTCTCCTGGTGGACACCTCCTTCTCGTCCTCCTCCTCG
TCCTCCTCCTCATCCTCCTCCTCTTCCTCATCCTCTTCCTCCTCCTCTTC
TCCTTCTTTTTCCTCCTCCTCTTCTCCTTCTTTTTCTTCTTCCTCCTCTG
CTTCTTCTCCGTCTACCATCGCTTCACAGAAAAGCAAATTGAGAGTTATT
TCTTCCCTGGGGGCGTTGCTCGCGCTGTTGCCGCCACCCACGATGCCGAC
AACCAGGTCTCAGCTGCAGCTACAGCAACAGCAACAGCAACGACAGCGGT
GATCAGGGCAAGAAAGAAAGATAGGCCGGAGGGGGGGGGGGAAGTGGACT
AAAGTTAAAAGGCTCACGCAACGATACTTTCACATCCGAAACGTCGCAGC
CGATTTGTGAGGGG
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protein sequence of NO20G01300.1

>NO20G01300.1-protein ID=NO20G01300.1-protein|Name=NO20G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MPSSGNSANEGDLVMLFFLTLLLAVLIAGCFRTPSIDMLQQQQQQQQQQR
QGQGSNTRKAAATAVPSRPMSIRAKALQKELGLSYGSPVTITTHGVLLLG
EENADSRGSSNSTCASTYSANTSSFVPQALDALRLLLEFADVFLIVHAPE
GPVGDAERARVMALLRREGMVRGMDAQQQQQQQQQQQEAVMAHKILFHST
FVGKQAIARQLKPHLHIDHDQLVLSNLLPFLPRLLLVDTSFSSSSSSSSS
SSSSSSSSSSSSSPSFSSSSSPSFSSSSSASSPSTIASQKSKLRVISSLG
ALLALLPPPTMPTTRSQLQLQQQQQQRQR*
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Synonyms
Publications