NO20G01300.1, NO20G01300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01300.1
Unique NameNO20G01300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1347
Alignment locationchr20:389675..391138 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:389675..391138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01300.1 vs.
Match: EWM22104.1 (hypothetical protein Naga_100039g38 [Nannochloropsis gaditana])

HSP 1 Score: 111.3 bits (277), Expect = 5.700e-21
Identity = 81/190 (42.63%), Postives = 114/190 (60.00%), Query Frame = 0 
Query:    4 SGNSANEGDLVMLFFLTLLLAVLIAGCFRTPSIDMLQQQQQQQQQQRQGQGSNTRKAAATAVPSRPMSIRAKALQKELGLSYGSPVTITTHGVLLLGEENADSRGSSNSTCASTYSANTSSFVPQALDALRLLLEFADVFLIVHAPEGPVGDAERARVMALLRREGMVRGMDAQQQQQQQQQQQEAVMAH 194
            S +  +E D+V+   +TL++AV +AG         LQ+       +++G+   T+K+  T VP+R +S+RAKALQKEL L  GSPVT+ T G+L         R +++ST ++   A+T  FVPQALDAL LLLEFADVFL+  A EG  G+A + RV+A L RE +VR  DA + Q+   Q    V  H
Sbjct:    7 STSGQSESDVVIFLLVTLVIAVFVAG--------YLQKSTTTDIPRQRGREITTKKS--TNVPTRTISVRAKALQKELALKLGSPVTLATEGILF--------RANNSSTTSTDTPASTYDFVPQALDALTLLLEFADVFLLAEAQEGRSGEATQRRVLASLERERLVR-KDATRDQEHGGQDGGTVAVH 177
The following BLAST results are available for this feature:
BLAST of NO20G01300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22104.15.700e-2142.63hypothetical protein Naga_100039g38 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01300NO20G01300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01300.1NO20G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01300.1.cds1NO20G01300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01300.1.cds2NO20G01300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01300.1 ID=NO20G01300.1|Name=NO20G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
GGTTTTGTGGCCTTTGCTTTGTCTTCGTTTGGACTTATTCTGGTCATTAC
ACTACACATCCTCCCGCCTCCTACCCGTCCTTTGCCATTTCCTCTTGATA
CCTGGCCCACTAGAAATGTGCCGGCTGTGGGCTGTCACCCCCCTCGCCCA
CTATTTCGAGCGAGCGCGAGGAGCTAGCAGTATTATGACCCTCCTCACTC
CACCACACGACACATACAGCGCGCCGTCCACACAAGCAAAGCACCATGCC
GAGCAGCGGCAATAGCGCCAATGAAGGTGACTTGGTGATGCTCTTCTTCC
TCACGCTCCTCCTCGCCGTCCTCATTGCCGGATGCTTTCGCACGCCTTCC
ATCGATATGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCGGCAGGG
ACAAGGAAGCAACACTAGGAAAGCAGCCGCCACAGCTGTCCCTTCCAGAC
CCATGTCCATCCGTGCCAAAGCGCTGCAAAAAGAATTAGGATTGAGTTAT
GGCAGCCCCGTCACAATCACGACGCATGGCGTGCTCCTCCTGGGAGAGGA
GAACGCGGACAGCAGAGGCAGCAGCAACAGCACCTGCGCCAGTACATATA
GTGCAAACACCAGTAGCTTCGTTCCCCAGGCTCTCGATGCGTTGCGACTG
TTGCTTGAATTTGCGGATGTCTTCTTAATCGTGCATGCACCAGAGGGTCC
AGTAGGCGATGCGGAAAGGGCACGGGTCATGGCCTTGCTACGGAGGGAGG
GGATGGTAAGGGGGATGGATGCGCAGCAGCAGCAGCAGCAGCAACAGCAG
CAGCAGGAGGCTGTTATGGCACATAAAATCCTCTTCCATTCCACTTTTGT
GGGAAAACAAGCGATAGCTCGGCAGCTCAAGCCCCATCTCCATATCGATC
ACGACCAGCTCGTACTTTCGAACCTCCTCCCCTTCCTTCCGCGACTTCTC
CTGGTGGACACCTCCTTCTCGTCCTCCTCCTCGTCCTCCTCCTCATCCTC
CTCCTCTTCCTCATCCTCTTCCTCCTCCTCTTCTCCTTCTTTTTCCTCCT
CCTCTTCTCCTTCTTTTTCTTCTTCCTCCTCTGCTTCTTCTCCGTCTACC
ATCGCTTCACAGAAAAGCAAATTGAGAGTTATTTCTTCCCTGGGGGCGTT
GCTCGCGCTGTTGCCGCCACCCACGATGCCGACAACCAGGTCTCAGCTGC
AGCTACAGCAACAGCAACAGCAACGACAGCGGTGATCAGGGCAAGAAAGA
AAGATAGGCCGGAGGGGGGGGGGGAAGTGGACTAAAGTTAAAAGGCTCAC
GCAACGATACTTTCACATCCGAAACGTCGCAGCCGATTTGTGAGGGG
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protein sequence of NO20G01300.1

>NO20G01300.1-protein ID=NO20G01300.1-protein|Name=NO20G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MPSSGNSANEGDLVMLFFLTLLLAVLIAGCFRTPSIDMLQQQQQQQQQQR
QGQGSNTRKAAATAVPSRPMSIRAKALQKELGLSYGSPVTITTHGVLLLG
EENADSRGSSNSTCASTYSANTSSFVPQALDALRLLLEFADVFLIVHAPE
GPVGDAERARVMALLRREGMVRGMDAQQQQQQQQQQQEAVMAHKILFHST
FVGKQAIARQLKPHLHIDHDQLVLSNLLPFLPRLLLVDTSFSSSSSSSSS
SSSSSSSSSSSSSPSFSSSSSPSFSSSSSASSPSTIASQKSKLRVISSLG
ALLALLPPPTMPTTRSQLQLQQQQQQRQR*
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mRNA from alignment at chr20:389675..391138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01300.1 ID=NO20G01300.1|Name=NO20G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp|location=Sequence derived from alignment at chr20:389675..391138- (Nannochloropsis oceanica)
GGTTTTGTGGCCTTTGCTTTGTCTTCGTTTGGACTTATTCTGGTCATTAC
ACTACACATCCTCCCGCCTCCTACCCGTCCTTTGCCATTTCCTCTTGATA
CCTGGCCCACTAGAAATGTGCCGGCTGTGGGCTGTCACCCCCCTCGCCCA
CTATTTCGAGCGAGCGCGAGGAGCTAGCAGTATTATGACCCTCCTCACTC
CACCACACGACACATACAGCGCGCCGTCCACACAAGCAAAGCACCATGCC
GAGCAGCGGCAATAGCGCCAATGAAGGTGACTTGGTGATGCTCTTCTTCC
TCACGCTCCTCCTCGCCGTCCTCATTGCCGGATGCTTTCGCACGCCTTCC
ATCGATATGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCGGCAGGG
ACAAGGAAGCAACACTAGGAAAGCAGCCGCCACAGCTGTCCCTTCCAGAC
CCATGTCCATCCGTGCCAAAGCGCTGCAAAAAGAATTAGGATTGAGTTAT
GGCAGCCCCGTCACAATCACGACGCATGGCGTGCTCCTCCTGGGAGAGGA
GAACGCGGACAGCAGAGGCAGCAGCAACAGCACCTGCGCCAGTACATATA
GTGCAAACACCAGTAGCTTCGTTCCCCAGGCTCTCGATGCGTTGCGACTG
TTGCTTGAATTTGCGGATGTCTTCTTAATCGTGCATGCACCAGAGGGTCC
AGTAGGCGATGCGGAAAGGGCACGGGTCATGGCCTTGCTACGGAGGGAGG
GGATGGTAAGGGGGATGGATGCGCAGCAGCAGCAGCAGCAGCAACAGCAG
CAGCAGGAGGCTGTTATGGCACATGTACGCATTCAAGAAGTGAATAAAGG
GTGGATGTGTAACCATCTTGCAGGCATCGATCGATCTTAAAGAGCCTGCC
CTCACCTTCCCCCCCCTCCCTCCCTTTCTCCTCCCAACCAGAAAATCCTC
TTCCATTCCACTTTTGTGGGAAAACAAGCGATAGCTCGGCAGCTCAAGCC
CCATCTCCATATCGATCACGACCAGCTCGTACTTTCGAACCTCCTCCCCT
TCCTTCCGCGACTTCTCCTGGTGGACACCTCCTTCTCGTCCTCCTCCTCG
TCCTCCTCCTCATCCTCCTCCTCTTCCTCATCCTCTTCCTCCTCCTCTTC
TCCTTCTTTTTCCTCCTCCTCTTCTCCTTCTTTTTCTTCTTCCTCCTCTG
CTTCTTCTCCGTCTACCATCGCTTCACAGAAAAGCAAATTGAGAGTTATT
TCTTCCCTGGGGGCGTTGCTCGCGCTGTTGCCGCCACCCACGATGCCGAC
AACCAGGTCTCAGCTGCAGCTACAGCAACAGCAACAGCAACGACAGCGGT
GATCAGGGCAAGAAAGAAAGATAGGCCGGAGGGGGGGGGGGAAGTGGACT
AAAGTTAAAAGGCTCACGCAACGATACTTTCACATCCGAAACGTCGCAGC
CGATTTGTGAGGGG
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Coding sequence (CDS) from alignment at chr20:389675..391138-

>NO20G01300.1 ID=NO20G01300.1|Name=NO20G01300.1|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at chr20:389675..391138- (Nannochloropsis oceanica)
ATGCCGAGCAGCGGCAATAGCGCCAATGAAGGTGACTTGGTGATGCTCTT
CTTCCTCACGCTCCTCCTCGCCGTCCTCATTGCCGGATGCTTTCGCACGC
CTTCCATCGATATGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCGG
CAGGGACAAGGAAGCAACACTAGGAAAGCAGCCGCCACAGCTGTCCCTTC
CAGACCCATGTCCATCCGTGCCAAAGCGCTGCAAAAAGAATTAGGATTGA
GTTATGGCAGCCCCGTCACAATCACGACGCATGGCGTGCTCCTCCTGGGA
GAGGAGAACGCGGACAGCAGAGGCAGCAGCAACAGCACCTGCGCCAGTAC
ATATAGTGCAAACACCAGTAGCTTCGTTCCCCAGGCTCTCGATGCGTTGC
GACTGTTGCTTGAATTTGCGGATGTCTTCTTAATCGTGCATGCACCAGAG
GGTCCAGTAGGCGATGCGGAAAGGGCACGGGTCATGGCCTTGCTACGGAG
GGAGGGGATGGTAAGGGGGATGGATGCGCAGCAGCAGCAGCAGCAGCAAC
AGCAGCAGCAGGAGGCTGTTATGGCACATAAAATCCTCTTCCATTCCACT
TTTGTGGGAAAACAAGCGATAGCTCGGCAGCTCAAGCCCCATCTCCATAT
CGATCACGACCAGCTCGTACTTTCGAACCTCCTCCCCTTCCTTCCGCGAC
TTCTCCTGGTGGACACCTCCTTCTCGTCCTCCTCCTCGTCCTCCTCCTCA
TCCTCCTCCTCTTCCTCATCCTCTTCCTCCTCCTCTTCTCCTTCTTTTTC
CTCCTCCTCTTCTCCTTCTTTTTCTTCTTCCTCCTCTGCTTCTTCTCCGT
CTACCATCGCTTCACAGAAAAGCAAATTGAGAGTTATTTCTTCCCTGGGG
GCGTTGCTCGCGCTGTTGCCGCCACCCACGATGCCGACAACCAGGTCTCA
GCTGCAGCTACAGCAACAGCAACAGCAACGACAGCGGTGA
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Synonyms
Publications